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Protein

ABC transporter C family member 5

Gene

ABCC5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Pump for glutathione S-conjugates. Involved in regulation of K+ and Na+ cell content. Mediates resistance to NaCl and Li+, confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca2+. Transports oestradiol-17-(beta-D-glucuronide) (E217G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition (PubMed:11296221, PubMed:11855639, PubMed:12943546, PubMed:14684837). High-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytic acid storage. Required for phytic acid accumulation in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds (PubMed:19797057).5 Publications

Catalytic activityi

ATP + H2O + xenobiotic(In) = ADP + phosphate + xenobiotic(Out).

Enzyme regulationi

(E217G) transport activity in negatively regulated by organic anions such as oestradiol-3-sulfate, luteolin-7-O-diglucuronide-4'-O-glucuronide, glycocholate, vanadate and the sulfonylurea glibenclamide, and, to a lower extent, by bafilomycin A1, NH4Cl, GSH, GSSG and DNB-GS.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi657 – 6648ATP 1PROSITE-ProRule annotation
Nucleotide bindingi1302 – 13098ATP 2PROSITE-ProRule annotation

GO - Molecular functioni

  • ATPase activity, coupled to transmembrane movement of substances Source: TAIR
  • ATP binding Source: UniProtKB-KW
  • sulfonylurea receptor activity Source: TAIR
  • xenobiotic-transporting ATPase activity Source: UniProtKB-EC

GO - Biological processi

  • abscisic acid-activated signaling pathway involved in stomatal movement Source: TAIR
  • cellular potassium ion homeostasis Source: TAIR
  • response to salt stress Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciARA:AT1G04120-MONOMER.
ARA:GQT-2228-MONOMER.
ReactomeiR-ATH-382556. ABC-family proteins mediated transport.

Protein family/group databases

TCDBi3.A.1.208.21. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter C family member 5 (EC:3.6.3.44)
Short name:
ABC transporter ABCC.5
Short name:
AtABCC5
Alternative name(s):
ATP-energized glutathione S-conjugate pump 5
Glutathione S-conjugate-transporting ATPase 5
Multidrug resistance-associated protein 5
Gene namesi
Name:ABCC5
Synonyms:MRP5
Ordered Locus Names:At1g04120
ORF Names:F20D22.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G04120.

Subcellular locationi

  • Membrane PROSITE-ProRule annotation; Multi-pass membrane protein PROSITE-ProRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei16 – 3621HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei76 – 9621HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei111 – 13121HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei142 – 16221HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei177 – 19721HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei312 – 33221HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei334 – 35421HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei421 – 44121HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei446 – 46621HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei533 – 55321HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei946 – 96621HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei986 – 100621HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei1078 – 109821HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei1117 – 113721HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei1155 – 117521HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei1180 – 120021HelicalPROSITE-ProRule annotationAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plant-type vacuole Source: TAIR
  • vacuolar membrane Source: TAIR
  • vacuole Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Disruption phenotypei

Increase water use efficiency (PubMed:12943546). Low phytic acid levels in seed tissue (PubMed:19797057).2 Publications

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 15141514ABC transporter C family member 5PRO_0000226076Add
BLAST

Proteomic databases

PaxDbiQ7GB25.
PRIDEiQ7GB25.

PTM databases

iPTMnetiQ7GB25.

Expressioni

Tissue specificityi

Ubiquitous, mostly in vascular tissues and epidermis, including guard cells.3 Publications

Developmental stagei

In flowers, present in anthers central vascular strand of the filament and in connecting tissues of the pollen sacs. Also present at the silique attachment site of the pedicel.1 Publication

Gene expression databases

ExpressionAtlasiQ7GB25. baseline and differential.
GenevisibleiQ7GB25. AT.

Interactioni

Protein-protein interaction databases

BioGridi24512. 7 interactions.
STRINGi3702.AT1G04120.1.

Structurei

3D structure databases

ProteinModelPortaliQ7GB25.
SMRiQ7GB25. Positions 300-870, 944-1498.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini307 – 588282ABC transmembrane type-1 1PROSITE-ProRule annotationAdd
BLAST
Domaini622 – 845224ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini949 – 1231283ABC transmembrane type-1 2PROSITE-ProRule annotationAdd
BLAST
Domaini1268 – 1502235ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili899 – 92729Sequence analysisAdd
BLAST

Sequence similaritiesi

Contains 2 ABC transmembrane type-1 domains.PROSITE-ProRule annotation
Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0054. Eukaryota.
COG1132. LUCA.
InParanoidiQ7GB25.
OMAiEYSSRST.
PhylomeDBiQ7GB25.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00664. ABC_membrane. 2 hits.
PF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF90123. SSF90123. 2 hits.
PROSITEiPS50929. ABC_TM1F. 2 hits.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q7GB25-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDFIEISLIF REHLPLLELC SVIINLLLFL VFLFAVSARQ ILVCVRRGRD
60 70 80 90 100
RLSKDDTVSA SNLSLEREVN HVSVGFGFNL SLLCCLYVLG VQVLVLVYDG
110 120 130 140 150
VKVRREVSDW FVLCFPASQS LAWFVLSFLV LHLKYKSSEK LPFLVRIWWF
160 170 180 190 200
LAFSICLCTM YVDGRRLAIE GWSRCSSHVV ANLAVTPALG FLCFLAWRGV
210 220 230 240 250
SGIQVTRSSS DLQEPLLVEE EAACLKVTPY STAGLVSLIT LSWLDPLLSA
260 270 280 290 300
GSKRPLELKD IPLLAPRDRA KSSYKVLKSN WKRCKSENPS KPPSLARAIM
310 320 330 340 350
KSFWKEAACN AVFAGLNTLV SYVGPYLISY FVDYLGGKEI FPHEGYVLAG
360 370 380 390 400
IFFTSKLIET VTTRQWYMGV DILGMHVRSA LTAMVYRKGL KLSSIAKQNH
410 420 430 440 450
TSGEIVNYMA VDVQRIGDYS WYLHDIWMLP MQIVLALAIL YKSVGIAAVA
460 470 480 490 500
TLVATIISIL VTIPLAKVQE DYQDKLMTAK DERMRKTSEC LRNMRVLKLQ
510 520 530 540 550
AWEDRYRVRL EEMREEEYGW LRKALYSQAF VTFIFWSSPI FVAAVTFATS
560 570 580 590 600
IFLGTQLTAG GVLSALATFR ILQEPLRNFP DLVSMMAQTK VSLDRISGFL
610 620 630 640 650
QEEELQEDAT VVIPRGLSNI AIEIKDGVFC WDPFSSRPTL SGIQMKVEKG
660 670 680 690 700
MRVAVCGTVG SGKSSFISCI LGEIPKISGE VRICGTTGYV SQSAWIQSGN
710 720 730 740 750
IEENILFGSP MEKTKYKNVI QACSLKKDIE LFSHGDQTII GERGINLSGG
760 770 780 790 800
QKQRVQLARA LYQDADIYLL DDPFSALDAH TGSDLFRDYI LSALAEKTVV
810 820 830 840 850
FVTHQVEFLP AADLILVLKE GRIIQSGKYD DLLQAGTDFK ALVSAHHEAI
860 870 880 890 900
EAMDIPSPSS EDSDENPIRD SLVLHNPKSD VFENDIETLA KEVQEGGSAS
910 920 930 940 950
DLKAIKEKKK KAKRSRKKQL VQEEERVKGK VSMKVYLSYM GAAYKGALIP
960 970 980 990 1000
LIILAQAAFQ FLQIASNWWM AWANPQTEGD ESKVDPTLLL IVYTALAFGS
1010 1020 1030 1040 1050
SVFIFVRAAL VATFGLAAAQ KLFLNMLRSV FRAPMSFFDS TPAGRILNRV
1060 1070 1080 1090 1100
SIDQSVVDLD IPFRLGGFAS TTIQLCGIVA VMTNVTWQVF LLVVPVAVAC
1110 1120 1130 1140 1150
FWMQKYYMAS SRELVRIVSI QKSPIIHLFG ESIAGAATIR GFGQEKRFIK
1160 1170 1180 1190 1200
RNLYLLDCFV RPFFCSIAAI EWLCLRMELL STLVFAFCMV LLVSFPHGTI
1210 1220 1230 1240 1250
DPSMAGLAVT YGLNLNGRLS RWILSFCKLE NKIISIERIY QYSQIVGEAP
1260 1270 1280 1290 1300
AIIEDFRPPS SWPATGTIEL VDVKVRYAEN LPTVLHGVSC VFPGGKKIGI
1310 1320 1330 1340 1350
VGRTGSGKST LIQALFRLIE PTAGKITIDN IDISQIGLHD LRSRLGIIPQ
1360 1370 1380 1390 1400
DPTLFEGTIR ANLDPLEEHS DDKIWEALDK SQLGDVVRGK DLKLDSPVLE
1410 1420 1430 1440 1450
NGDNWSVGQR QLVSLGRALL KQAKILVLDE ATASVDTATD NLIQKIIRTE
1460 1470 1480 1490 1500
FEDCTVCTIA HRIPTVIDSD LVLVLSDGRV AEFDTPARLL EDKSSMFLKL
1510
VTEYSSRSTG IPEL
Length:1,514
Mass (Da):168,574
Last modified:March 7, 2006 - v2
Checksum:i35351F361D101783
GO

Sequence cautioni

The sequence AAC16754.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y11250 mRNA. Translation: CAA72120.1.
AF225908 mRNA. Translation: AAG14965.1.
AC002411 Genomic DNA. Translation: AAC16754.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE27658.1.
AK220840 mRNA. Translation: BAD94167.1.
PIRiT00961.
T52080.
RefSeqiNP_171908.1. NM_100293.2. [Q7GB25-1]
UniGeneiAt.5395.

Genome annotation databases

EnsemblPlantsiAT1G04120.1; AT1G04120.1; AT1G04120. [Q7GB25-1]
GeneIDi839277.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y11250 mRNA. Translation: CAA72120.1.
AF225908 mRNA. Translation: AAG14965.1.
AC002411 Genomic DNA. Translation: AAC16754.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE27658.1.
AK220840 mRNA. Translation: BAD94167.1.
PIRiT00961.
T52080.
RefSeqiNP_171908.1. NM_100293.2. [Q7GB25-1]
UniGeneiAt.5395.

3D structure databases

ProteinModelPortaliQ7GB25.
SMRiQ7GB25. Positions 300-870, 944-1498.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi24512. 7 interactions.
STRINGi3702.AT1G04120.1.

Protein family/group databases

TCDBi3.A.1.208.21. the atp-binding cassette (abc) superfamily.

PTM databases

iPTMnetiQ7GB25.

Proteomic databases

PaxDbiQ7GB25.
PRIDEiQ7GB25.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G04120.1; AT1G04120.1; AT1G04120. [Q7GB25-1]
GeneIDi839277.

Organism-specific databases

TAIRiAT1G04120.

Phylogenomic databases

eggNOGiKOG0054. Eukaryota.
COG1132. LUCA.
InParanoidiQ7GB25.
OMAiEYSSRST.
PhylomeDBiQ7GB25.

Enzyme and pathway databases

BioCyciARA:AT1G04120-MONOMER.
ARA:GQT-2228-MONOMER.
ReactomeiR-ATH-382556. ABC-family proteins mediated transport.

Miscellaneous databases

PROiQ7GB25.

Gene expression databases

ExpressionAtlasiQ7GB25. baseline and differential.
GenevisibleiQ7GB25. AT.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00664. ABC_membrane. 2 hits.
PF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF90123. SSF90123. 2 hits.
PROSITEiPS50929. ABC_TM1F. 2 hits.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Weigmann N., Ansorge M., Meuller-Roeber B.
    Submitted (FEB-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Columbia.
    Tissue: Hypocotyl.
  2. "Cloning and characterization of putative sulfonylurea recepter-like gene from Arabidopsis thaliana."
    Ko J.-H., Kwon M.J., Yi H.C., Cho M.H.
    Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Wassilewskija.
  3. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  4. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  5. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1438-1514.
    Strain: cv. Columbia.
  6. "The Arabidopsis thaliana ABC transporter AtMRP5 controls root development and stomata movement."
    Gaedeke N., Klein M., Kolukisaoglu U.H., Forestier C., Mueller A., Ansorge M., Becker D., Mamnun Y., Kuchler K., Schulz B., Mueller-Roeber B., Martinoia E.
    EMBO J. 20:1875-1887(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, ENZYME REGULATION.
  7. "The Arabidopsis thaliana ABC protein superfamily, a complete inventory."
    Sanchez-Fernandez R., Davies T.G., Coleman J.O., Rea P.A.
    J. Biol. Chem. 276:30231-30244(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  8. "Multifunctionality of plant ABC transporters -- more than just detoxifiers."
    Martinoia E., Klein M., Geisler M., Bovet L., Forestier C., Kolukisaoglu H.U., Mueller-Roeber B., Schulz B.
    Planta 214:345-355(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, GENE FAMILY.
  9. "Family business: the multidrug-resistance related protein (MRP) ABC transporter genes in Arabidopsis thaliana."
    Kolukisaoglu U.H., Bovet L., Klein M., Eggmann T., Geisler M., Wanke D., Martinoia E., Schulz B.
    Planta 216:107-119(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.
  10. "The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use."
    Klein M., Perfus-Barbeoch L., Frelet A., Gaedeke N., Reinhardt D., Mueller-Roeber B., Martinoia E., Forestier C.
    Plant J. 33:119-129(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  11. "Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance."
    Lee E.K., Kwon M.J., Ko J.-H., Yi H.C., Hwang M.G., Chang S., Cho M.H.
    Plant Physiol. 134:528-538(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, TISSUE SPECIFICITY.
  12. Cited for: GENE FAMILY, NOMENCLATURE.
  13. "The Arabidopsis ATP-binding cassette protein AtMRP5/AtABCC5 is a high affinity inositol hexakisphosphate transporter involved in guard cell signaling and phytate storage."
    Nagy R., Grob H., Weder B., Green P., Klein M., Frelet-Barrand A., Schjoerring J.K., Brearley C., Martinoia E.
    J. Biol. Chem. 284:33614-33622(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.

Entry informationi

Entry nameiAB5C_ARATH
AccessioniPrimary (citable) accession number: Q7GB25
Secondary accession number(s): O65619, Q56ZX0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: March 7, 2006
Last modified: January 20, 2016
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.