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Q7G3T8

- BGA13_ORYSJ

UniProt

Q7G3T8 - BGA13_ORYSJ

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Protein

Beta-galactosidase 13

Gene

Os10g0330600

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei187 – 1871Proton donorSequence Analysis
Active sitei259 – 2591NucleophileSequence Analysis

GO - Molecular functioni

  1. beta-galactosidase activity Source: UniProtKB-EC
  2. carbohydrate binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Protein family/group databases

CAZyiGH35. Glycoside Hydrolase Family 35.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-galactosidase 13 (EC:3.2.1.23)
Short name:
Lactase 13
Gene namesi
Ordered Locus Names:Os10g0330600, LOC_Os10g18400
ORF Names:OsJ_029894, OSJNAb0008A05.15, OSJNBb0008A05.25
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 10

Organism-specific databases

GrameneiQ7G3T8.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence AnalysisAdd
BLAST
Chaini24 – 828805Beta-galactosidase 13PRO_0000294165Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi157 – 1571N-linked (GlcNAc...)Sequence Analysis
Glycosylationi198 – 1981N-linked (GlcNAc...)Sequence Analysis
Glycosylationi249 – 2491N-linked (GlcNAc...)Sequence Analysis
Glycosylationi260 – 2601N-linked (GlcNAc...)Sequence Analysis
Glycosylationi362 – 3621N-linked (GlcNAc...)Sequence Analysis
Glycosylationi366 – 3661N-linked (GlcNAc...)Sequence Analysis
Glycosylationi392 – 3921N-linked (GlcNAc...)Sequence Analysis
Glycosylationi502 – 5021N-linked (GlcNAc...)Sequence Analysis
Glycosylationi578 – 5781N-linked (GlcNAc...)Sequence Analysis
Glycosylationi586 – 5861N-linked (GlcNAc...)Sequence Analysis
Glycosylationi615 – 6151N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Expressioni

Gene expression databases

ExpressionAtlasiQ7G3T8. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ7G3T8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini746 – 82883SUEL-type lectinPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 35 family.Curated
Contains 1 SUEL-type lectin domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG1874.
HOGENOMiHOG000239919.
InParanoidiQ7G3T8.
OMAiSCFATEV.

Family and domain databases

Gene3Di2.60.120.260. 2 hits.
3.20.20.80. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view]
PANTHERiPTHR23421. PTHR23421. 1 hit.
PfamiPF02140. Gal_Lectin. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view]
PRINTSiPR00742. GLHYDRLASE35.
SUPFAMiSSF49785. SSF49785. 3 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q7G3T8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTTMAAAAT CLVALLVVVL AEAAGVGCTT VAYNDRSLVI DGERRIIISG
60 70 80 90 100
SIHYPRSTPE MWPDLIKKAK EGGLDAIETY VFWNGHEPHR RQYNFEGNYD
110 120 130 140 150
IIRFFKEIQN AGLYAILRIG PYICGEWNYG GLPAWLRDIP QMQFRMHNAP
160 170 180 190 200
FENEMENFTT LIINKMKDAN MFAGQGGPII LAQIENEYGN VMGQLNNNQS
210 220 230 240 250
ASEYIHWCAD MANKQNVGVP WIMCQQDSDV PHNVVNTCNG FYCHDWFPNR
260 270 280 290 300
TGIPKIWTEN WTGWFKAWDK PDFHRSAEDI AFAVAMFFQK RGSLQNYYMY
310 320 330 340 350
HGGTNFGRTS GGPYITTSYD YDAPLDEYGN LRQPKYGHLK DLHSVIKSIE
360 370 380 390 400
KILVHGEYVD ANYSDNVTVT KYTLGSTSAC FINNRNDNKD LNVTLDGNTH
410 420 430 440 450
LLPAWSVSIL PDCKTVAFNS AKIKAQTTIM VKKANMVEKE PESLKWSWMR
460 470 480 490 500
ENLTPFMTDE KGSYRKNELL EQIVTSTDQS DYLWYRTSLD HKGEASYTLF
510 520 530 540 550
VNTTGHELYA FVNGMLVGKN HSPNGHFVFQ LESAVKLHDG KNYISLLSAT
560 570 580 590 600
IGLKNYGPLF EKMPAGIVGG PVKLIDNNGT GIDLSNSSWS YKAGLAGEYR
610 620 630 640 650
QIHLDKPGYR WDNNNGTVPI NRPFTWYKTT FQAPAGQDTV VVDLLGLNKG
660 670 680 690 700
VAWVNGNNLG RYWPSYTAAE MGGCHHCDYR GVFQAEGDGQ KCLTGCGEPS
710 720 730 740 750
QRYYHVPRSF LKNGEPNTLI LFEEAGGDPS QVIFHSVVAG SVCVSAEVGD
760 770 780 790 800
AITLSCGQHS KTISTIDVTS FGVARGQCGA YEGGCESKAA YKAFTEACLG
810 820
KESCTVQIIN ALTGSGCLSG VLTVQASC
Length:828
Mass (Da):92,000
Last modified:August 22, 2006 - v1
Checksum:iC0DE893C51D7D2B8
GO

Sequence cautioni

The sequence AAL31090.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence AAN04162.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence EAZ15685.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti420 – 4201S → N in AK119350. (PubMed:12869764)Curated
Sequence conflicti521 – 5211H → R in AK119350. (PubMed:12869764)Curated
Sequence conflicti817 – 8171C → G in EAZ15685. (PubMed:15685292)Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC091749 Genomic DNA. Translation: AAL31090.1. Different initiation.
AC131374 Genomic DNA. Translation: AAN04162.1. Different initiation.
DP000086 Genomic DNA. Translation: AAP53027.2.
AP008216 Genomic DNA. Translation: BAF26280.1.
CM000147 Genomic DNA. Translation: EAZ15685.1. Different initiation.
AK119350 mRNA. No translation available.
RefSeqiNP_001064366.1. NM_001070901.1.
UniGeneiOs.46702.

Genome annotation databases

EnsemblPlantsiOS10T0330600-01; OS10T0330600-01; OS10G0330600.
GeneIDi4348337.
KEGGiosa:4348337.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC091749 Genomic DNA. Translation: AAL31090.1 . Different initiation.
AC131374 Genomic DNA. Translation: AAN04162.1 . Different initiation.
DP000086 Genomic DNA. Translation: AAP53027.2 .
AP008216 Genomic DNA. Translation: BAF26280.1 .
CM000147 Genomic DNA. Translation: EAZ15685.1 . Different initiation.
AK119350 mRNA. No translation available.
RefSeqi NP_001064366.1. NM_001070901.1.
UniGenei Os.46702.

3D structure databases

ProteinModelPortali Q7G3T8.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi GH35. Glycoside Hydrolase Family 35.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS10T0330600-01 ; OS10T0330600-01 ; OS10G0330600 .
GeneIDi 4348337.
KEGGi osa:4348337.

Organism-specific databases

Gramenei Q7G3T8.

Phylogenomic databases

eggNOGi COG1874.
HOGENOMi HOG000239919.
InParanoidi Q7G3T8.
OMAi SCFATEV.

Gene expression databases

ExpressionAtlasi Q7G3T8. baseline.

Family and domain databases

Gene3Di 2.60.120.260. 2 hits.
3.20.20.80. 1 hit.
InterProi IPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view ]
PANTHERi PTHR23421. PTHR23421. 1 hit.
Pfami PF02140. Gal_Lectin. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view ]
PRINTSi PR00742. GLHYDRLASE35.
SUPFAMi SSF49785. SSF49785. 3 hits.
SSF51445. SSF51445. 1 hit.
PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "In-depth view of structure, activity, and evolution of rice chromosome 10."
    Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H.
    , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.
    Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiBGA13_ORYSJ
AccessioniPrimary (citable) accession number: Q7G3T8
Secondary accession number(s): A3C3M2, Q7G642, Q8W5D6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: August 22, 2006
Last modified: October 29, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3