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Protein

Putative uncharacterized protein YmdE

Gene

ymdE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein YmdE
Gene namesi
Name:ymdE
Ordered Locus Names:b1028
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14357. ymdE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 107107Putative uncharacterized protein YmdEPRO_0000273579Add
BLAST

Interactioni

Protein-protein interaction databases

IntActiQ7DFV4. 5 interactions.

Structurei

3D structure databases

ProteinModelPortaliQ7DFV4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000009408.

Family and domain databases

Gene3Di3.40.366.10. 1 hit.
InterProiIPR001227. Ac_transferase_dom.
IPR016035. Acyl_Trfase/lysoPLipase.
[Graphical view]
SUPFAMiSSF52151. SSF52151. 1 hit.

Sequencei

Sequence statusi: Complete.

Q7DFV4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDGVQAMRD YLAGLDIASP EHQVLMNVTA KSEVAPSIIK ENLSLHLTHT
60 70 80 90 100
VKWTESLDTF LNMPTPVAFL EISNKPYLGN MLNDFAGVDQ QRVMHCRKAF

SDAKVFK
Length:107
Mass (Da):12,008
Last modified:January 23, 2007 - v3
Checksum:iB84B69E169EDB560
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
PIRiB64845.
RefSeqiWP_000389396.1. NZ_LN832404.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
PIRiB64845.
RefSeqiWP_000389396.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ7DFV4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ7DFV4. 5 interactions.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

EcoGeneiEG14357. ymdE.

Phylogenomic databases

HOGENOMiHOG000009408.

Family and domain databases

Gene3Di3.40.366.10. 1 hit.
InterProiIPR001227. Ac_transferase_dom.
IPR016035. Acyl_Trfase/lysoPLipase.
[Graphical view]
SUPFAMiSSF52151. SSF52151. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYMDE_ECOLI
AccessioniPrimary (citable) accession number: Q7DFV4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: January 23, 2007
Last modified: October 14, 2015
This is version 67 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.