Q7CW11 (Q7CW11_AGRT5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-deoxyribose-5-phosphate aldolase EMBL AAK88601.2

Gene names

Name:	deoC EMBL AAK88601.2
Ordered Locus Names:	Atu4848 EMBL AAK88601.2

Organism

Agrobacterium tumefaciens (strain C58 / ATCC 33970) [Reference proteome] [HAMAP] EMBL AAK88601.2

Taxonomic identifier

176299 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium tumefaciens complex › Agrobacterium fabrum

Protein attributes

Sequence length	319 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343
Subcellular location	Cytoplasm By similarity SAAS SAAS011343.

Ontologies

Keywords
Cellular component	Cytoplasm SAAS SAAS011343
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro deoxyribose phosphate catabolic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7CW11 [UniParc]. Last modified January 15, 2008. Version 2. Checksum: 73940A2005606596	FASTA	319	34,799
	10 20 30 40 50 60 MSEAFPRNNG TALKPEWFDD VSVNRSASER RAATITTRRS VKKEYQVAWQ IKAITCIDLT 70 80 90 100 110 120 TLSGDDTPGR VRRLCAKARR PVREDILETL GLADAGITTG AVCVYPTMVP HAVKALEGTA 130 140 150 160 170 180 IPVASVATGF PSGLTPLPQR LAEIRYAVEQ GAKEIDIVIT REFVLTQNWT ALYDEISAMR 190 200 210 220 230 240 EACGDAHMKA ILATGDLNTL TNVYRASMVA MQAGSDFIKT STGKEEVNAT LPVSLTMVRA 250 260 270 280 290 300 LRDYGELTGQ MVGFKPAGGL KTAKDAVSWL TLMKEELGNR WLEPDLFRIG ASSMLGDIER 310 QLEHFVTGRY SSAHHHAAA

References

[1]

"The genome of the natural genetic engineer Agrobacterium tumefaciens C58." Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K., Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y., Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P., Clendenning J. , Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R., Li M.-J., McClelland E., Palmieri A., Raymond C., Rouse G., Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y., Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S., Hendrick C., Zhao Z.-Y., Dolan M., Chumley F., Tingey S.V., Tomb J.-F., Gordon M.P., Olson M.V., Nester E.W. Science 294:2317-2323(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C58 / ATCC 33970.

[2]

"Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58." Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B., Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K., Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C. , Allinger M., Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C., Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S. Science 294:2323-2328(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C58 / ATCC 33970.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE007870 Genomic DNA. Translation: AAK88601.2.
RefSeq	NP_355816.2. NC_003063.2.
3D structure databases
ProteinModelPortal	Q7CW11.
ModBase	Search...
Protein-protein interaction databases
STRING	176299.Atu4848.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAK88601; AAK88601; Atu4848.
GeneID	1136722.
KEGG	atu:Atu4848.
PATRIC	20819118. VBIAgrTum91616_4654.
Phylogenomic databases
eggNOG	COG0274.
HOGENOM	HOG000241644.
KO	K01619.
OMA	MVIDRGA.
ProtClustDB	CLSK864118.
Enzyme and pathway databases
UniPathway	UPA00002; UER00468.
Family and domain databases
Gene3D	3.20.20.70. 1 hit.
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/FbaB/lacD_aldolase. [Graphical view]
PANTHER	PTHR10889. PTHR10889. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. deoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q7CW11_AGRT5

Accession

Primary (citable) accession number: Q7CW11

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	January 15, 2008
Last modified:	May 1, 2013
This is version 67 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)