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Q7CRW4 (Q7CRW4_AGRT5) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative malate dehydrogenase EMBL AAK90179.2
Gene names
Ordered Locus Names:Atu3208 EMBL AAK90179.2
OrganismAgrobacterium tumefaciens (strain C58 / ATCC 33970) [Reference proteome] [HAMAP] EMBL AAK90179.2
Taxonomic identifier176299 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium tumefaciens complex ›

Protein attributes

Sequence length348 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Cellular componentCytoplasm SAAS SAAS003767
   LigandNAD PDB 1Z2I
Nucleotide-binding PDB 1Z2I
   Molecular functionOxidoreductase SAAS SAAS003767
   Technical term3D-structure PDB 1Z2I
Complete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionnucleotide binding

Inferred from electronic annotation. Source: UniProtKB-KW

oxidoreductase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding115 – 1195NAD PDB 1Z2I
Nucleotide binding173 – 1753NAD PDB 1Z2I
Nucleotide binding225 – 2262NAD PDB 1Z2I
Nucleotide binding310 – 3112NAD PDB 1Z2I

Sites

Binding site431NAD PDB 1Z2I
Binding site1571NAD PDB 1Z2I

Sequences

Sequence LengthMass (Da)Tools
Q7CRW4 [UniParc].

Last modified January 15, 2008. Version 2.
Checksum: BF4F594311BA8139

FASTA34837,231
        10         20         30         40         50         60 
MARLDELERF CRAVFLAVGT DEETADAATR AMMHGTRLGV DSHGVRLLAH YVTALEGGRL 

        70         80         90        100        110        120 
NRRPQISRVS GFGAVETIDA DHAHGARATY AAMENAMALA EKFGIGAVAI RNSSHFGPAG 

       130        140        150        160        170        180 
AYALEAARQG YIGLAFCNSD SFVRLHDGAM RFHGTNPIAV GVPAADDMPW LLDMATSAVP 

       190        200        210        220        230        240 
YNRVLLYRSL GQQLPQGVAS DGDGVDTRDP NAVEMLAPVG GEFGFKGAAL AGVVEIFSAV 

       250        260        270        280        290        300 
LTGMRLSFDL APMGGPDFST PRGLGAFVLA LKPEAFLERD VFDESMKRYL EVLRGSPARE 

       310        320        330        340 
DCKVMAPGDR EWAVAAKRER EGAPVDPVTR AAFSELAEKF SVSPPTYH

« Hide

References

« Hide 'large scale' references
[1]"The genome of the natural genetic engineer Agrobacterium tumefaciens C58."
Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K., Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y., Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P., Clendenning J. expand/collapse author list , Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R., Li M.-J., McClelland E., Palmieri A., Raymond C., Rouse G., Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y., Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S., Hendrick C., Zhao Z.-Y., Dolan M., Chumley F., Tingey S.V., Tomb J.-F., Gordon M.P., Olson M.V., Nester E.W.
Science 294:2317-2323(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C58 / ATCC 33970.
[2]"Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58."
Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B., Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K., Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C. expand/collapse author list , Allinger M., Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C., Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S.
Science 294:2323-2328(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C58 / ATCC 33970.
[3]"Crystal Structure of Agrobacterium Tumefaciens Malate Dehydrogenase."
Patskovsky Y., Almo S.C.
Submitted (MAR-2005) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 2-348 IN COMPLEX WITH NAD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE007870 Genomic DNA. Translation: AAK90179.2.
RefSeqNP_357394.2. NC_003063.2.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1Z2IX-ray2.20A/B/C/D2-348[»]
ProteinModelPortalQ7CRW4.
SMRQ7CRW4. Positions 1-348.
ModBaseSearch...

Protein-protein interaction databases

STRING176299.Atu3208.

Protocols and materials databases

DNASU1135010.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAK90179; AAK90179; Atu3208.
GeneID1135010.
KEGGatu:Atu3208.
PATRIC20815882. VBIAgrTum91616_3053.

Phylogenomic databases

eggNOGCOG2055.
HOGENOMHOG000173270.
OMAVDSHGVR.
ProtClustDBCLSK886447.

Family and domain databases

InterProIPR003767. Malate/L-lactate_DH.
[Graphical view]
PANTHERPTHR11091. PTHR11091. 1 hit.
PfamPF02615. Ldh_2. 1 hit.
[Graphical view]
SUPFAMSSF89733. MDH_LDH. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ7CRW4.

Entry information

Entry nameQ7CRW4_AGRT5
AccessionPrimary (citable) accession number: Q7CRW4
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: January 15, 2008
Last modified: May 1, 2013
This is version 51 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info