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Protein
Submitted name:

Putative transcriptional regulator

Gene

ytfH

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSENT99287:GCTI-4434-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative transcriptional regulatorImported
Gene namesi
Name:ytfHImported
Ordered Locus Names:STM4402Imported
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)Imported
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001014 Componenti: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei54 – 541N6,N6-dimethyllysineCombined sources
Modified residuei61 – 611N6,N6-dimethyllysineCombined sources
Modified residuei102 – 1021N6,N6-dimethyllysineCombined sources

Proteomic databases

PaxDbiQ7CP90.

Interactioni

Protein-protein interaction databases

STRINGi99287.STM4402.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1YYVX-ray2.35A/B1-128[»]
ProteinModelPortaliQ7CP90.
SMRiQ7CP90. Positions 9-122.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ7CP90.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini20 – 11899HTH hxlR-type DNA-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410816S. Bacteria.
COG1733. LUCA.
HOGENOMiHOG000293549.
OMAiQILQHLT.
OrthoDBiEOG622PS8.
PhylomeDBiQ7CP90.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR002577. HTH_HxlR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01638. HxlR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51118. HTH_HXLR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7CP90-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRAHTLSRQL REGNLFAEQC PSREVLKHVT SRWGVLILVA LRDGTHRFSD
60 70 80 90 100
LRRKMGGVSE KMLAQSLQAL EQDGFLNRVS YPVVPPHVEY SLTPLGEQVS
110 120
DKVAALADWI ELNLPQVLAQ RERLSDGG
Length:128
Mass (Da):14,387
Last modified:July 5, 2004 - v1
Checksum:i45141F7BA111C4C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL23222.1.
RefSeqiNP_463263.1. NC_003197.1.
WP_001201297.1. NC_003197.1.

Genome annotation databases

EnsemblBacteriaiAAL23222; AAL23222; STM4402.
GeneIDi1255928.
KEGGistm:STM4402.
PATRICi32387727. VBISalEnt20916_4627.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL23222.1.
RefSeqiNP_463263.1. NC_003197.1.
WP_001201297.1. NC_003197.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1YYVX-ray2.35A/B1-128[»]
ProteinModelPortaliQ7CP90.
SMRiQ7CP90. Positions 9-122.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi99287.STM4402.

Proteomic databases

PaxDbiQ7CP90.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL23222; AAL23222; STM4402.
GeneIDi1255928.
KEGGistm:STM4402.
PATRICi32387727. VBISalEnt20916_4627.

Phylogenomic databases

eggNOGiENOG410816S. Bacteria.
COG1733. LUCA.
HOGENOMiHOG000293549.
OMAiQILQHLT.
OrthoDBiEOG622PS8.
PhylomeDBiQ7CP90.

Enzyme and pathway databases

BioCyciSENT99287:GCTI-4434-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ7CP90.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR002577. HTH_HxlR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01638. HxlR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51118. HTH_HXLR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LT2 / SGSC1412 / ATCC 700720Imported.
  2. "X-ray crystal structure of putative transcriptional regulator ytfH from Salmonella typhimurium."
    Osipiuk J., Quartey P., Lezondra L., Moy S., Collart F., Joachimiak A.
    Submitted (FEB-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.35 ANGSTROMS), METHYLATION AT LYS-54; LYS-61 AND LYS-102.

Entry informationi

Entry nameiQ7CP90_SALTY
AccessioniPrimary (citable) accession number: Q7CP90
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: March 16, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.