Q7CL43 (Q7CL43_YERPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative deoxyribose-phosphate aldolase EMBL AAM83841.1
EC=4.1.2.4 EMBL CAL22210.1

Gene names

Name:	deoC3 EMBL AAS64069.1
Ordered Locus Names:	y0247 EMBL AAM83841.1, YP_3925 EMBL AAS64069.1, YPO3622 EMBL CAL22210.1

Organism

Yersinia pestis [Reference proteome] [HAMAP]

Taxonomic identifier

632 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia

Protein attributes

Sequence length	233 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343

Ontologies

Keywords
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343 EMBL CAL22210.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro deoxyribose phosphate catabolic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: UniProtKB-EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7CL43 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 9E3D42F7539138B7	FASTA	233	25,470
	10 20 30 40 50 60 MIDFNDPRQV AKAIQFTNVN ADLTREGVIK HLNICLEYQF DAAMIAPCWV YLAKDVLKGS 70 80 90 100 110 120 GVRVATTVNF PQANDTTAMK VAIVRELAKE GADEFDFPPN PGFLLGGLDE LYFNELKEVT 130 140 150 160 170 180 HIAHDLGMKV KAMLEFGFIT EEAMKIKATR YAYEAGIDWV KQSSGWGKGG CAATVEDVQL 190 200 210 220 230 LKANIQAPCR VKVSGKVNTL EKMKEMFLAG AELVGTSSGP ELVKGLTGDI NAY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of Yersinia pestis, the causative agent of plague." Parkhill J., Wren B.W., Thomson N.R., Titball R.W., Holden M.T.G., Prentice M.B., Sebaihia M., James K.D., Churcher C.M., Mungall K.L., Baker S., Basham D., Bentley S.D., Brooks K., Cerdeno-Tarraga A.-M., Chillingworth T., Cronin A., Davies R.M. , Davis P., Dougan G., Feltwell T., Hamlin N., Holroyd S., Jagels K., Karlyshev A.V., Leather S., Moule S., Oyston P.C.F., Quail M.A., Rutherford K.M., Simmonds M., Skelton J., Stevens K., Whitehead S., Barrell B.G. Nature 413:523-527(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CO-92 / Biovar Orientalis and CO92 EMBL CAL22210.1.
[2]	"Genome sequence of Yersinia pestis KIM." Deng W., Burland V., Plunkett G. III, Boutin A., Mayhew G.F., Liss P., Perna N.T., Rose D.J., Mau B., Zhou S., Schwartz D.C., Fetherston J.D., Lindler L.E., Brubaker R.R., Plano G.V., Straley S.C., McDonough K.A., Nilles M.L. , Matson J.S., Blattner F.R., Perry R.D. J. Bacteriol. 184:4601-4611(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: KIM EMBL AAM83841.1 and KIM10+ / Biovar Mediaevalis.
[3]	"Annotation and evolutionary relationships of a small regulatory RNA gene micF and its target ompF in Yersinia species." Delihas N. BMC Microbiol. 3:13-13(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: CO92 EMBL CAL22210.1.
[4]	"Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans." Song Y., Tong Z., Wang J., Wang L., Guo Z., Han Y., Zhang J., Pei D., Zhou D., Qin H., Pang X., Han Y., Zhai J., Li M., Cui B., Qi Z., Jin L., Dai R. , Chen F., Li S., Ye C., Du Z., Lin W., Wang J., Yu J., Yang H., Wang J., Huang P., Yang R. DNA Res. 11:179-197(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 91001 EMBL AAS64069.1 and 91001 / Biovar Mediaevalis.
[5]	"Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus." Zhou D., Tong Z., Song Y., Han Y., Pei D., Pang X., Zhai J., Li M., Cui B., Qi Z., Jin L., Dai R., Du Z., Wang J., Guo Z., Wang J., Huang P., Yang R. J. Bacteriol. 186:5147-5152(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: 91001 EMBL AAS64069.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE009952 Genomic DNA. Translation: AAM83841.1. AE017042 Genomic DNA. Translation: AAS64069.1. AL590842 Genomic DNA. Translation: CAL22210.1.
PIR	AG0440.
RefSeq	NP_667590.1. NC_004088.1. NP_995192.1. NC_005810.1. YP_002348507.1. NC_003143.1.
3D structure databases
ModBase	Search...
MobiDB	Search...
Protein-protein interaction databases
STRING	214092.YPO3622.
Protocols and materials databases
DNASU	1145194.
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAM83841; AAM83841; y0247. AAS64069; AAS64069; YP_3925.
GeneID	1145194. 1176442. 2767295.
KEGG	ype:YPO3622. ypk:y0247. ypm:YP_3925.
Phylogenomic databases
HOGENOM	HOG000241645.
KO	K01619.
OMA	MTSAGKA.
OrthoDB	EOG6QZMW5.
ProtClustDB	CLSK889529.
Enzyme and pathway databases
BioCyc	YPES214092:GKDD-3579-MONOMER.
UniPathway	UPA00002; UER00468.
Family and domain databases
Gene3D	3.20.20.70. 1 hit.
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/FbaB/lacD_aldolase. [Graphical view]
PANTHER	PTHR10889. PTHR10889. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. deoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q7CL43_YERPE

Accession

Primary (citable) accession number: Q7CL43
Secondary accession number(s): Q74PI2

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	March 19, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)