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Protein
Submitted name:

Possible type III secretion protein

Gene

gspD2

Organism
Yersinia pestis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciYPES214092:GKDD-254-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Possible type III secretion proteinImported
Submitted name:
Putative secretinImported
Submitted name:
Putative type III secretion proteinImported
Gene namesi
Name:gspD2Imported
Ordered Locus Names:y0514Imported, YP_0410Imported, YPO0257Imported
OrganismiYersinia pestisImported
Taxonomic identifieri632 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
Proteomesi
  • UP000000815 Componenti: Chromosome
  • UP000001019 Componenti: Chromosome
  • UP000002490 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei21 – 4222HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi187410.y0514.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini205 – 29793Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000245123.
KOiK03219.
OMAiNAVIVHD.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7CKS5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIVGLRQKPY LNLRNYKWMS LIYIMRKITG LILLFFATLL PYGKFSYVKA
60 70 80 90 100
IPWQGEPFFI YSRGMTVSEL LKDLGMNYGI PVVISSEINE HFTGKIRDKT
110 120 130 140 150
PEKILSELAG RYNITWYYDG ETLYFYPVQS IKREFISPDG LAANTLVKYL
160 170 180 190 200
QRGDVLAGKN CAIKAIPHLD TLEVKGVPIC IERVKSVSKM LSEQVRHQNQ
210 220 230 240 250
NKETVKVFPL KYASAADSDY QYRDQNVRLP GLVSVLRELN QGNNLPLAGG
260 270 280 290 300
NQPDGNQASS PVFSADPRQN AVIIRDRQAN MPIYRSLITQ LDQRPIQIEI
310 320 330 340 350
SVTIIDVDAG DISQLGVDWS ASASIGGTGV SFNSTFAKNN AEGFSTVIGD
360 370 380 390 400
TGNFMVRLNA LQKNSRARIL SQPSVVTLNN IQAVLDKNVT FYTKLQGEKV
410 420 430 440 450
AKLESVTSGS LLRVTPRMIE TEGVQEVLLN LNIQDGQQQA STNSNEPLPE
460 470 480 490 500
IRNSDISTQA TLQVGQSLLL GGFIQDTQIE SQNKIPLLGD IPLLGGLFRS
510 520
TDKQSHSVVR LFLIKAVPVN AGE
Length:523
Mass (Da):58,017
Last modified:July 5, 2004 - v1
Checksum:iAAAC453EDDC5A54B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009952 Genomic DNA. Translation: AAM84103.1.
AE017042 Genomic DNA. Translation: AAS60681.1.
AL590842 Genomic DNA. Translation: CAL18941.1.
PIRiAC0032.
RefSeqiYP_002345337.1. NC_003143.1.

Genome annotation databases

EnsemblBacteriaiAAM84103; AAM84103; y0514.
AAS60681; AAS60681; YP_0410.
GeneIDi1173101.
KEGGiype:YPO0257.
ypk:y0514.
ypm:YP_0410.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009952 Genomic DNA. Translation: AAM84103.1.
AE017042 Genomic DNA. Translation: AAS60681.1.
AL590842 Genomic DNA. Translation: CAL18941.1.
PIRiAC0032.
RefSeqiYP_002345337.1. NC_003143.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi187410.y0514.

Protocols and materials databases

DNASUi1145461.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM84103; AAM84103; y0514.
AAS60681; AAS60681; YP_0410.
GeneIDi1173101.
KEGGiype:YPO0257.
ypk:y0514.
ypm:YP_0410.

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000245123.
KOiK03219.
OMAiNAVIVHD.

Enzyme and pathway databases

BioCyciYPES214092:GKDD-254-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ7CKS5_YERPE
AccessioniPrimary (citable) accession number: Q7CKS5
Secondary accession number(s): Q74XK8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: September 7, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.