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Protein

DNA polymerase III subunit psi

Gene

holD

Organism
Yersinia pestis
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DNA-directed DNA polymeraseUniRule annotation, Nucleotidyltransferase, Transferase

Keywords - Biological processi

DNA replicationUniRule annotation

Enzyme and pathway databases

BioCyciYPES214092:GKDD-425-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA polymerase III subunit psiUniRule annotation
Gene namesi
Name:holDImported
Synonyms:b4372Imported
Ordered Locus Names:y3752Imported, YPO0428Imported
OrganismiYersinia pestisImported
Taxonomic identifieri632 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
ProteomesiUP000000815 Componenti: Chromosome UP000002490 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi214092.YPO0428.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000218328.
KOiK02344.
OMAiQICAHEH.
OrthoDBiEOG6WDSJJ.

Family and domain databases

Gene3Di3.40.50.10220. 1 hit.
InterProiIPR004615. DNA_pol_III_psi.
[Graphical view]
PfamiPF03603. DNA_III_psi. 1 hit.
[Graphical view]
PIRSFiPIRSF029225. DNA_pol_III_psi. 1 hit.
ProDomiPD032475. DNA_pol_III_psi. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF102220. SSF102220. 1 hit.

Sequencei

Sequence statusi: Complete.

Q7CG57-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASRRDLLLQ QLGITQWVLR RPAVLQGEIA IHLPEDTRLL IVAQQLPEHG
60 70 80 90 100
DPLLCDVLRS LGLTPHQVYA LTPDQVAMLP EDTQCNSWRL GISEPLAVAG
110 120 130 140
AQLHSPELAG LYQDAGAKRA LWQQICHYEA DFYPDASRSG HSIPN
Length:145
Mass (Da):16,077
Last modified:July 5, 2004 - v1
Checksum:i69CE1E35B4268B2A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009952 Genomic DNA. Translation: AAM87297.1.
AL590842 Genomic DNA. Translation: CAL19109.1.
PIRiAC0053.
RefSeqiNP_671046.1. NC_004088.1.
NP_995024.1. NC_005810.1.
WP_002209207.1. NZ_KN150724.1.
YP_002345504.1. NC_003143.1.

Genome annotation databases

EnsemblBacteriaiAAM87297; AAM87297; y3752.
AAS63901; AAS63901; YP_3753.
KGA52406; KGA52406; DJ56_438.
GeneIDi1173274.
KEGGiype:YPO0428.
ypk:y3752.
ypm:YP_3753.
PATRICi18589937. VBIYerPes7843_0706.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009952 Genomic DNA. Translation: AAM87297.1.
AL590842 Genomic DNA. Translation: CAL19109.1.
PIRiAC0053.
RefSeqiNP_671046.1. NC_004088.1.
NP_995024.1. NC_005810.1.
WP_002209207.1. NZ_KN150724.1.
YP_002345504.1. NC_003143.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi214092.YPO0428.

Protocols and materials databases

DNASUi1148699.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM87297; AAM87297; y3752.
AAS63901; AAS63901; YP_3753.
KGA52406; KGA52406; DJ56_438.
GeneIDi1173274.
KEGGiype:YPO0428.
ypk:y3752.
ypm:YP_3753.
PATRICi18589937. VBIYerPes7843_0706.

Phylogenomic databases

HOGENOMiHOG000218328.
KOiK02344.
OMAiQICAHEH.
OrthoDBiEOG6WDSJJ.

Enzyme and pathway databases

BioCyciYPES214092:GKDD-425-MONOMER.

Family and domain databases

Gene3Di3.40.50.10220. 1 hit.
InterProiIPR004615. DNA_pol_III_psi.
[Graphical view]
PfamiPF03603. DNA_III_psi. 1 hit.
[Graphical view]
PIRSFiPIRSF029225. DNA_pol_III_psi. 1 hit.
ProDomiPD032475. DNA_pol_III_psi. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF102220. SSF102220. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CO-92 / Biovar OrientalisImported and CO92Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KIMImported and KIM10+ / Biovar MediaevalisImported.
  3. "Annotation and evolutionary relationships of a small regulatory RNA gene micF and its target ompF in Yersinia species."
    Delihas N.
    BMC Microbiol. 3:13-13(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CO92Imported.

Entry informationi

Entry nameiQ7CG57_YERPE
AccessioniPrimary (citable) accession number: Q7CG57
Secondary accession number(s): Q74PY1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: June 24, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.