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Protein
Submitted name:

Type III helper protein HrpW1

Gene

hrpW1

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

  • protein secretion by the type III secretion system Source: JCVI
Complete GO annotation...

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-1398-MONOMER.

Protein family/group databases

CAZyiPL3. Polysaccharide Lyase Family 3.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III helper protein HrpW1Imported
Gene namesi
Name:hrpW1Imported
Ordered Locus Names:PSPTO_1373Imported
OrganismiPseudomonas syringae pv. tomato (strain DC3000)Imported
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002515 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_1373.

Structurei

3D structure databases

ProteinModelPortaliQ7C4I5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini219 – 416198Pectate_lyaseInterPro annotationAdd
BLAST

Phylogenomic databases

HOGENOMiHOG000115214.
OMAiDVKHAYD.
OrthoDBiEOG6K9QH3.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR004898. Pectate_lyase_cat.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF03211. Pectate_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Q7C4I5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIGITPRPQ QTTTPLDFSA LSGKSPQPNT FGEQNTQQAI DPSALLFGSD
60 70 80 90 100
TQKDVNFGTP DSTVQNPQDA SKPNDSQSNI AKLISALIMS LLQMLTNSNK
110 120 130 140 150
KQDTNQEQPD SQAPFQNNGG LGTPSADSGG GGTPDATGGG GGDTPSATGG
160 170 180 190 200
GGGDTPTATG GGGSGGGGTP TATGGGSGGT PTATGGGEGG VTPQITPQLA
210 220 230 240 250
NPNRTSGTGS VSDTAGSTEQ AGKINVVKDT IKVGAGEVFD GHGATFTADK
260 270 280 290 300
SMGNGDQGEN QKPMFELAEG ATLKNVNLGE NEVDGIHVKA KNAQEVTIDN
310 320 330 340 350
VHAQNVGEDL ITVKGEGGAA VTNLNIKNSS AKGADDKVVQ LNANTHLKID
360 370 380 390 400
NFKADDFGTM VRTNGGKQFD DMSIELNGIE ANHGKFALVK SDSDDLKLAT
410 420
GNIAMTDVKH AYDKTQASTQ HTEL
Length:424
Mass (Da):42,911
Last modified:July 5, 2004 - v1
Checksum:i7AF4ED059BE79D2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO54895.1.
RefSeqiNP_791200.1. NC_004578.1.
WP_005763926.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO54895; AAO54895; PSPTO_1373.
GeneIDi1183009.
KEGGipst:PSPTO_1373.
PATRICi19993988. VBIPseSyr93040_1395.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO54895.1.
RefSeqiNP_791200.1. NC_004578.1.
WP_005763926.1. NC_004578.1.

3D structure databases

ProteinModelPortaliQ7C4I5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223283.PSPTO_1373.

Protein family/group databases

CAZyiPL3. Polysaccharide Lyase Family 3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO54895; AAO54895; PSPTO_1373.
GeneIDi1183009.
KEGGipst:PSPTO_1373.
PATRICi19993988. VBIPseSyr93040_1395.

Phylogenomic databases

HOGENOMiHOG000115214.
OMAiDVKHAYD.
OrthoDBiEOG6K9QH3.

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-1398-MONOMER.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR004898. Pectate_lyase_cat.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF03211. Pectate_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000Imported.

Entry informationi

Entry nameiQ7C4I5_PSESM
AccessioniPrimary (citable) accession number: Q7C4I5
Secondary accession number(s): Q7BM42
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: July 6, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.