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Protein

Type I secretion system ATP-binding protein PrsD

Gene

prsD

Organism
Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Mediates secretion of glycanase ExsH.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi366 – 373ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTransport
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Type I secretion system ATP-binding protein PrsD
Gene namesi
Name:prsD
Ordered Locus Names:RB1292
ORF Names:SM_b21466
Encoded oniPlasmid pSymB (megaplasmid 2)0 Publication
OrganismiRhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Taxonomic identifieri266834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001976 Componenti: Plasmid pSymB

Subcellular locationi

Q7ANN4:

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei22 – 42HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei59 – 79HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei148 – 168HelicalPROSITE-ProRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004152671 – 582Type I secretion system ATP-binding protein PrsDAdd BLAST582

Interactioni

Subunit structurei

Part of a type I secretion system composed of PrsD and PrsE.1 Publication

Structurei

3D structure databases

ProteinModelPortaliQ7ANN4.
SMRiQ7ANN4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini22 – 301ABC transmembrane type-1PROSITE-ProRule annotationAdd BLAST280
Domaini332 – 568ABC transporterPROSITE-ProRule annotationAdd BLAST237

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000101575.
KOiK12539.

Family and domain databases

Gene3Di1.20.1560.10. 1 hit.
InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR036640. ABC1_TM_sf.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR010128. ATPase_T1SS_PrtD.
IPR027417. P-loop_NTPase.
PANTHERiPTHR24222:SF0. PTHR24222:SF0. 1 hit.
PfamiView protein in Pfam
PF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
TIGRFAMsiTIGR01842. type_I_sec_PrtD. 1 hit.
PROSITEiView protein in PROSITE
PS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q7ANN4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATSKGRNAD PAAALRDCRA AFIGVGVASA LVNLLYLTGS FFMLEVYDRI
60 70 80 90 100
LPSRSIPSLI ALSLLALLLY AFQGAFELIR GRMLVRIAGA LDESLNGRIY
110 120 130 140 150
RAIVKAPLKL RMQGDGLQAL RDFDQVRSFL SGVGPAALFD LPWLPFYIAI
160 170 180 190 200
CFLFHPVIGL IAIIGGLILT LLTYLTNRGT QAPAKKASEA GGLRNVFAQA
210 220 230 240 250
SQRNAEVVHA MGMSARLTAL WERRNTEFRD ENRRTSDIGN GYGALSKVFR
260 270 280 290 300
MALQSGVLAA GAVLVIRGEA SPGIIIAGSI LTARALAPVE LAIGNWRGLV
310 320 330 340 350
AARQSWQRLK ELLNALPEAD APLQLPDPHE RLTVEGLASG PPAAQRLVVS
360 370 380 390 400
DVNFTVRAGG AVGVIGPSAS GKSSLARAIL GIWPAYRGSV RLDGAALDQW
410 420 430 440 450
DSDALGKHVG YLPQDVELFA GTIAQNICRF AEDATSEAIV AAAKAARVND
460 470 480 490 500
LILRLPNGYD TEIGDGGMTL SAGQRQRVAL ARALYGDPFL VVLDEPNSNL
510 520 530 540 550
DAEGEQALSE AIMSVRSRGG IVIVVAHRPS ALASVDLVLM MNEGRMQAFG
560 570 580
PKEQVLGQVL RPQQVERQNA LKVVAEGQEA KQ
Length:582
Mass (Da):62,120
Last modified:January 25, 2012 - v2
Checksum:i102FEF388C9ED6BA
GO

Sequence cautioni

Q7ANN4: The sequence CAC49692 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U89163 Genomic DNA. Translation: AAB64091.1.
AL591985 Genomic DNA. Translation: CAC49692.2. Different initiation.
PIRiD96003.
RefSeqiNP_437832.2. NC_003078.1.

Genome annotation databases

EnsemblBacteriaiCAC49692; CAC49692; SM_b21466.
GeneIDi1237624.
KEGGisme:SM_b21466.
PATRICifig|266834.11.peg.6215.

Similar proteinsi

Entry informationi

Entry nameiPRSD_RHIME
AccessioniPrimary (citable) accession number: Q7ANN4
Secondary accession number(s): O33678
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 25, 2012
Last sequence update: January 25, 2012
Last modified: October 25, 2017
This is version 63 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families