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Protein

RNA polymerase sigma factor

Gene

Cgl1919

Organism
Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciCORYNE:G18NG-11511-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Ordered Locus Names:Cgl1919Imported
OrganismiCorynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)Imported
Taxonomic identifieri196627 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesCorynebacteriaceaeCorynebacterium
Proteomesi
  • UP000000582 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseImported

Interactioni

Protein-protein interaction databases

STRINGi196627.cg2102

Structurei

3D structure databases

ProteinModelPortaliQ79VF3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini122 – 135RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini291 – 317RNA_pol_sigma70InterPro annotationAdd BLAST27

Sequence similaritiesi

Belongs to the sigma-70 factor family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105DG1 Bacteria
COG0568 LUCA
KOiK03087
OMAiYQRWLAE

Family and domain databases

Gene3Di1.10.10.10, 2 hits
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR009042 RNA_pol_sigma70_r1_2
IPR007627 RNA_pol_sigma70_r2
IPR007624 RNA_pol_sigma70_r3
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF00140 Sigma70_r1_2, 1 hit
PF04542 Sigma70_r2, 1 hit
PF04539 Sigma70_r3, 1 hit
PF04545 Sigma70_r4, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 2 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00715 SIGMA70_1, 1 hit
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q79VF3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAPSTQDLA TTEREVDPGS RRGQTNDNPS QDLVRVYLNG IGKTALLTAE
60 70 80 90 100
DEVELAQTIE VGLYAEHLLK NSEEPLTRAM KRDLKVLAKD GKKARSHLLE
110 120 130 140 150
ANLRLVVSLA KRYTGRGMPL LDLIQEGNLG LIRAMEKFDY SKGFKFSTYA
160 170 180 190 200
TWWIRQAITR GMADQSRTIR LPVHLVEQVN KLSRIKRELY QHLGREATNE
210 220 230 240 250
ELAEESGIEE SKIEMLLRQS RDPVSLDMPV GADEEAPLGD FIEDSEATDA
260 270 280 290 300
ESAVVASMRH SDIRAVLNTL EPREQDVIRL RYGLDDGVPR TLDQIGRRFG
310 320 330
LSRERVRQIE REVMSKLRDG ERASRLREYA Q
Length:331
Mass (Da):37,556
Last modified:July 5, 2004 - v1
Checksum:i4F717F3BB395EEC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000036 Genomic DNA Translation: BAB99312.1
RefSeqiNP_601125.1, NC_003450.3
WP_011014752.1, NC_006958.1

Genome annotation databases

EnsemblBacteriaiBAB99312; BAB99312; BAB99312
GeneIDi1019876
KEGGicgl:NCgl1844
PATRICifig|196627.13.peg.1857

Similar proteinsi

Entry informationi

Entry nameiQ79VF3_CORGL
AccessioniPrimary (citable) accession number: Q79VF3
Secondary accession number(s): Q59210
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: April 25, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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