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Protein

Putative transposase YkgN

Gene

ykgN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciECOL316407:JW0258-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transposase YkgN
Gene namesi
Name:ykgN
Ordered Locus Names:b4505, JW0258
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14418. ykgN.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 112112Putative transposase YkgNPRO_0000271889Add
BLAST

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
hslRP0ACG82EBI-9131095,EBI-562824

Protein-protein interaction databases

BioGridi4261563. 182 interactions.
IntActiQ79E92. 43 interactions.
STRINGi316407.4902998.

Structurei

3D structure databases

ProteinModelPortaliQ79E92.
SMRiQ79E92. Positions 4-47.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the transposase 8 family.Curated

Phylogenomic databases

eggNOGiCOG2963. LUCA.
InParanoidiQ79E92.
KOiK07483.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR002514. Transposase_8.
[Graphical view]
PfamiPF01527. HTH_Tnp_1. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.

Sequencei

Sequence statusi: Complete.

Q79E92-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGKRYPEEF KTEAVKQVVD LGYSVASVAT RLDITTHSLY AWIKKYGPDS
60 70 80 90 100
STNKEQSDAQ AEIRRLQKEL KRVTDERDIL KKAAVDSICQ CNTPFNYLFR
110
CFELQCLSRS VV
Length:112
Mass (Da):12,857
Last modified:May 6, 2004 - v1
Checksum:iBD4908F444F617DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20943 Genomic DNA. Translation: AAA69641.1.
U70214 Genomic DNA. Translation: AAB08686.1.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA77932.1.
PIRiI41306.
RefSeqiWP_000015532.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiBAA77932; BAA77932; BAA77932.
KEGGiecj:JW0258.
PATRICi48659731. VBIEscCol107702_0261.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20943 Genomic DNA. Translation: AAA69641.1.
U70214 Genomic DNA. Translation: AAB08686.1.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA77932.1.
PIRiI41306.
RefSeqiWP_000015532.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ79E92.
SMRiQ79E92. Positions 4-47.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261563. 182 interactions.
IntActiQ79E92. 43 interactions.
STRINGi316407.4902998.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA77932; BAA77932; BAA77932.
KEGGiecj:JW0258.
PATRICi48659731. VBIEscCol107702_0261.

Organism-specific databases

EcoGeneiEG14418. ykgN.

Phylogenomic databases

eggNOGiCOG2963. LUCA.
InParanoidiQ79E92.
KOiK07483.

Enzyme and pathway databases

BioCyciECOL316407:JW0258-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR002514. Transposase_8.
[Graphical view]
PfamiPF01527. HTH_Tnp_1. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYKGN_ECOLI
AccessioniPrimary (citable) accession number: Q79E92
Secondary accession number(s): Q2EEQ1, Q57247
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 9, 2007
Last sequence update: May 6, 2004
Last modified: April 13, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.