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Protein

Protein Vpr

Gene

vpr

Organism
Human immunodeficiency virus 1
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Host-virus interactionSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Protein VprSAAS annotation
Gene namesi
Name:vprImported
OrganismiHuman immunodeficiency virus 1Imported
Taxonomic identifieri11676 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group
Virus hostiHomo sapiens (Human) [TaxID: 9606]

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Host nucleusSAAS annotation, VirionSAAS annotation

Pathology & Biotechi

Keywords - Diseasei

AIDSUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ77YF9.
SMRiQ77YF9. Positions 1-73.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

InterProiIPR000012. RetroV_VpR/X.
[Graphical view]
PfamiPF00522. VPR. 1 hit.
[Graphical view]
PRINTSiPR00444. HIVVPRVPX.

Sequencei

Sequence statusi: Complete.

Q77YF9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQAPEDQGP QREPHNEWTL ELLEELKNEA VRHFPRIWLH GLGQHIYETY
60 70
GDTWAGVEAI IRILQQLLFI HFQNWVST
Length:78
Mass (Da):9,305
Last modified:July 5, 2004 - v1
Checksum:i1A58C06C73A4AF64
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF033819 Genomic RNA. Translation: AAC82595.1.
DQ167216 Genomic RNA. Translation: AAZ95230.1.
KJ925006 Genomic RNA. Translation: AIJ50271.1.
RefSeqiNP_057852.2. NC_001802.1.

Genome annotation databases

GeneIDi155807.
KEGGivg:155807.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF033819 Genomic RNA. Translation: AAC82595.1.
DQ167216 Genomic RNA. Translation: AAZ95230.1.
KJ925006 Genomic RNA. Translation: AIJ50271.1.
RefSeqiNP_057852.2. NC_001802.1.

3D structure databases

ProteinModelPortaliQ77YF9.
SMRiQ77YF9. Positions 1-73.
ModBaseiSearch...
MobiDBiSearch...

Chemistry

ChEMBLiCHEMBL2146310.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi155807.
KEGGivg:155807.

Family and domain databases

InterProiIPR000012. RetroV_VpR/X.
[Graphical view]
PfamiPF00522. VPR. 1 hit.
[Graphical view]
PRINTSiPR00444. HIVVPRVPX.
ProtoNetiSearch...

Publicationsi

  1. "Appendix 2: Retroviral taxonomy, protein structure, sequences, and genetic maps."
    Petropoulos C.J.
    (In) Coffin J.M. (eds.); RETROVIRUSES, pp.757-0, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, NY, USA (1997)
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Chappey C.
    Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Predominance of a Rare Type of HIV-1 in Estonia."
    Adojaan M., Kivisild T., Mannik A., Krispin T., Ustina V., Zilmer K., Liebert E., Jaroslavtsev N., Priimagi L., Tefanova V., Schmidt J., Krohn K., Villems R., Salminen M., Ustav M.
    J. Acquir. Immune Defic. Syndr. 39:598-605(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: EST2002-394Imported.
  4. Partridge T.S.
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: IIIBImported.
  5. "The First Glance at the HLA Class I-Associated Immunopeptidome from HIV-1-Infected Cells."
    Ternette N., Yang H., Partridge T., Llano A., Cedeno S., Fischer R., Charles P., Dudek N., Purcell A., Borrow P., Mothe B., Crespo M., Dorrell L., Brander C., Kessler B., Hanke T.
    Submitted (AUG-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: IIIBImported.

Entry informationi

Entry nameiQ77YF9_9HIV1
AccessioniPrimary (citable) accession number: Q77YF9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: July 22, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.