Chitobiose phosphorylase - Vibrio proteolyticus

Preferred order of sections

Names and origin

Protein names

Submitted name:
Chitobiose phosphorylase EMBL BAC87867.1

Gene names

Name:

chbp EMBL BAC87867.1

Organism

Vibrio proteolyticus (Aeromonas proteolytica) EMBL BAC87867.1

Taxonomic identifier

671 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length	801 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Calcium PDB 1V7V PDB 1V7W PDB 1V7X Metal-binding PDB 1V7V PDB 1V7W PDB 1V7X
Technical term	3D-structure PDB 1V7V PDB 1V7W PDB 1V7X
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro sphingolipid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	integral to membrane Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro glucosylceramidase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Region

349 – 350

2

N-acetyl-D-glucosamine binding PDB 1V7W PDB 1V7X

Region

490 – 492

3

N-acetyl-D-glucosamine binding PDB 1V7W PDB 1V7X

Sites

Metal binding

186

1

Calcium PDB 1V7V PDB 1V7W PDB 1V7X

Metal binding

187

1

Calcium; via carbonyl oxygen PDB 1V7V PDB 1V7W PDB 1V7X

Metal binding

190

1

Calcium; via carbonyl oxygen PDB 1V7V PDB 1V7W PDB 1V7X

Metal binding

196

1

Calcium; via carbonyl oxygen PDB 1V7V PDB 1V7W PDB 1V7X

Metal binding

197

1

Calcium PDB 1V7V PDB 1V7W

Binding site

343

1

N-acetyl-D-glucosamine PDB 1V7W PDB 1V7X

Binding site

637

1

N-acetyl-D-glucosamine PDB 1V7W PDB 1V7X

Binding site

690

1

N-acetyl-D-glucosamine PDB 1V7W PDB 1V7X

Sequences

Sequence

Length

Mass (Da)

Tools

Q76IQ9 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: BB9D864E7FFB6EDC
Show »

FASTA

801

90,361

        10         20         30         40         50         60 
MKYGYFDNDN REYVITRPDV PAPWTNYLGT EKFCTVISHN AGGYSFYNSP EYNRVTKFRP 

        70         80         90        100        110        120 
NATFDRPGHY VYLRDDDSGD YWSISWQPVA KSLDEAQYQI RHGLSYSKFQ CDYNGIHARK 

       130        140        150        160        170        180 
TLFVPKGEDA EIWDVVIKNT SDQVRTISAF SFVEFSFSHI QSDNQNHQMS LYSAGTAYRP 

       190        200        210        220        230        240 
GLIEYDLYYN TDDFEGFYYL ASTFDPDSYD GQRDRFLGLY RDEANPLAVE QGRCSNSAQT 

       250        260        270        280        290        300 
CYNHCGSLHK QFTLQPGEEI RFAYILGIGK GNGERLREHY QDVANIDAAF AAIKAHWDER 

       310        320        330        340        350        360 
CAKFQVKSPN QGLDTMINAW TLYQAETCVV WSRFASFIEV GGRTGLGYRD TAQDAISVPH 

       370        380        390        400        410        420 
ANPEMTRKRI VDLLRGQVKA GYGLHLFDPD WFDPEKEDVA PSKSPTVVPT PSDEDKIHGI 

       430        440        450        460        470        480 
KDTCSDDHLW LIPTICKYVM ETGETSFFDQ MIPYADGGEA SVYEHMKAAL DFSAEYVGQT 

       490        500        510        520        530        540 
GICKGLRADW NDCLNLGGGE SSMVSFLHFW ALQEFIDLAK FLGKDQDVNT YTEMAANVRE 

       550        560        570        580        590        600 
ACETHLWDDE GGWYIRGLTK NGDKIGTAQQ QEGRVHLESN TLAVLSGLAS QERGEQAMDA 

       610        620        630        640        650        660 
VDEHLFSPYG LHLNAPSFST PNDDIGFVTR VYQGVKENGA IFSHPNPWAW VAETKLGRGD 

       670        680        690        700        710        720 
RAMKFYDALN PYNQNDIIEK RIAEPYSYVQ FIMGRDHQDH GRANHPWLTG TSGWAYFAVT 

       730        740        750        760        770        780 
NYILGVQSGF TGLSVDPCIP SDWPGFEVTR QWRGATYHIQ VENPDHVSKG VKSITLNGAP 

       790        800 
IQGRIPPQAQ GSDNQVVVVL G

« Hide

References

[1]	"Reaction mechanism of chitobiose phosphorylase from Vibrio proteolyticus: identification of family 36 glycosyltransferase in Vibrio." Honda Y., Kitaoka M., Hayashi K. Biochem. J. 377:225-232(2004) [PubMed: 13678418] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Chitobiose phosphorylase from Vibrio proteolyticus, a member of glycosyl transferase family 36, has a clan GH-L-like (alpha/alpha)(6) barrel fold." Hidaka M., Honda Y., Kitaoka M., Nirasawa S., Hayashi K., Wakagi T., Shoun H., Fushinobu S. Structure 12:937-947(2004) [PubMed: 15274915] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB096684 Genomic DNA. Translation: BAC87867.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1V7V	X-ray	1.80	A	1-801	[»]
1V7W	X-ray	1.60	A	1-801	[»]
1V7X	X-ray	2.00	A	1-801	[»]

ProteinModelPortal

Q76IQ9.

SMR

Q76IQ9. Positions 1-801.

ModBase

Search...

Protein family/group databases

CAZy

GH94. Glycoside Hydrolase Family 94.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR009342. Carb-bd_put_dom.
IPR006775. Glucosylceramidase.
IPR011013. Glyco_hydro-type_carb-bd.
IPR010383. Glyco_transf_36.
IPR010403. GT36_AF.
[Graphical view]

Gene3D

G3DSA:1.50.10.10. CelA/Cel48F_cat. 1 hit.

Pfam

PF06204. CBM_X. 1 hit.
PF04685. DUF608. 1 hit.
PF06165. Glyco_transf_36. 1 hit.
PF06205. GT36_AF. 1 hit.
[Graphical view]

SMART

SM01068. CBM_X. 1 hit.
[Graphical view]

SUPFAM

SSF74650. Gal_mut_like. 1 hit.
SSF48208. Glyco_trans_6hp. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q76IQ9_VIBPR

Accession

Primary (citable) accession number: Q76IQ9

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	January 25, 2012
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)