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Q761V0

- SC6A5_MOUSE

UniProt

Q761V0 - SC6A5_MOUSE

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Protein
Sodium- and chloride-dependent glycine transporter 2
Gene
Slc6a5, Glyt2
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses By similarity.

GO - Molecular functioni

  1. neurotransmitter:sodium symporter activity Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Neurotransmitter transport, Symport, Transport

Protein family/group databases

TCDBi2.A.22.2.6. the neurotransmitter:sodium symporter (nss) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Sodium- and chloride-dependent glycine transporter 2
Short name:
GlyT-2
Short name:
GlyT2
Alternative name(s):
Solute carrier family 6 member 5
Gene namesi
Name:Slc6a5
Synonyms:Glyt2
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Unplaced

Organism-specific databases

MGIiMGI:105090. Slc6a5.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 201201Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei202 – 22221Helical; Name=1; Reviewed prediction
Add
BLAST
Transmembranei229 – 24921Helical; Name=2; Reviewed prediction
Add
BLAST
Transmembranei273 – 29321Helical; Name=3; Reviewed prediction
Add
BLAST
Topological domaini294 – 396103Extracellular Reviewed prediction
Add
BLAST
Transmembranei397 – 41721Helical; Name=4; Reviewed prediction
Add
BLAST
Transmembranei433 – 45321Helical; Name=5; Reviewed prediction
Add
BLAST
Transmembranei472 – 49221Helical; Name=6; Reviewed prediction
Add
BLAST
Transmembranei510 – 53021Helical; Name=7; Reviewed prediction
Add
BLAST
Transmembranei565 – 58521Helical; Name=8; Reviewed prediction
Add
BLAST
Transmembranei611 – 63121Helical; Name=9; Reviewed prediction
Add
BLAST
Transmembranei640 – 66021Helical; Name=10; Reviewed prediction
Add
BLAST
Transmembranei677 – 69721Helical; Name=11; Reviewed prediction
Add
BLAST
Transmembranei717 – 73721Helical; Name=12; Reviewed prediction
Add
BLAST
Topological domaini738 – 79962Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 799799Sodium- and chloride-dependent glycine transporter 2
PRO_0000214763Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi345 – 3451N-linked (GlcNAc...) Reviewed prediction
Glycosylationi355 – 3551N-linked (GlcNAc...) Reviewed prediction
Glycosylationi360 – 3601N-linked (GlcNAc...) Reviewed prediction
Glycosylationi366 – 3661N-linked (GlcNAc...) Reviewed prediction
Glycosylationi714 – 7141N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

MaxQBiQ761V0.
PaxDbiQ761V0.
PRIDEiQ761V0.

PTM databases

PhosphoSiteiQ761V0.

Expressioni

Tissue specificityi

Isoform a and isoform b are expressed at high levels in brain stem and spinal cord. Isoform a is also expressed in the cerebellum.1 Publication

Gene expression databases

GenevestigatoriQ761V0.

Interactioni

Protein-protein interaction databases

IntActiQ761V0. 1 interaction.
MINTiMINT-4133901.

Structurei

3D structure databases

ProteinModelPortaliQ761V0.
SMRiQ761V0. Positions 193-759.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG0733.
HOGENOMiHOG000116406.
HOVERGENiHBG071421.
InParanoidiQ761V0.
PhylomeDBiQ761V0.

Family and domain databases

InterProiIPR000175. Na/ntran_symport.
[Graphical view]
PANTHERiPTHR11616. PTHR11616. 1 hit.
PfamiPF00209. SNF. 1 hit.
[Graphical view]
PRINTSiPR00176. NANEUSMPORT.
PROSITEiPS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS00754. NA_NEUROTRAN_SYMP_2. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform a1 Publication (identifier: Q761V0-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MDCSAPKEMN KQPANILEAA VPGHRDSPRA PRTSPEQDLP AEAPAATVQP    50
PRVPRSASTG AQTFQSADAR ACEAQQSGVG FCNLSSPRAQ ATSAALRDLS 100
EGHSAQANPP SGPAGAGNAL HCKIPALRGP EEDANVSVGK GTLEHNNTPA 150
VGWVNMSQST VVLGTDGIAS VLPGSVATTT IPEDEQGDEN KARGNWSSKL 200
DFILSMVGYA VGLGNVWRFP YLAFQNGGGA FLIPYLMMLA LAGLPIFFLE 250
VSLGQFASQG PVSVWKAIPA LQGCGIAMLI ISVLIAIYYN VIICYTLFYL 300
FASFVSVLPW GSCNNPWNTP ECKDKTKLLL DSCVIGDHPK IQIKNSTFCM 350
TAYPNLTMVN FTSQTNKTFV SGSEEYFKYF VLKISAGIEY PGEIRWPLAF 400
CLFLAWVIVY ASLAKGIKSS GKVVYFTATF PYVVLVILLI RGVTLPGAGA 450
GIWYFITPKW EKLTDATVWK DAATQIFFSL SAAWGGLITL SSYNKFHNNC 500
YRDTLIVTCT NSATSIFAGF VIFSVIGFMA NERKVNIENV ADQGPGIAFV 550
VYPEALTRLP LSPFWAIIFF LMLLTLGLDT MFATIETIVT SISDEFPKYL 600
RTHKPVFTLG CCICFFIMGF PMITQGGIYM FQLVDTYAAS YALVIIAIFE 650
LVGISYVYGL QRFCEDIEMM IGFKPNIFWK VCWAFVTPTI LTFILCFSFY 700
QWEPMTYGSY RYPNWSMVLG WLMLACSVIW IPIMFVIKMY LAPGRFIERL 750
KLVCSPQPDW GPFLAQHRGE RYKNMIDPLG TSSLGLKLPV KDLELGTQC 799
Length:799
Mass (Da):87,861
Last modified:July 5, 2004 - v1
Checksum:i92AC7750C7023D45
GO
Isoform b1 Publication (identifier: Q761V0-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-8: Missing.

Show »
Length:791
Mass (Da):86,999
Checksum:i5F7051201736EC01
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 88Missing in isoform b. 1 Publication
VSP_051603

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti151 – 1511V → E in AAL17054. 1 Publication
Sequence conflicti151 – 1511V → E in AAN11408. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB118159 mRNA. Translation: BAD16781.1.
AF411042 mRNA. Translation: AAL17054.1.
AY147186 mRNA. Translation: AAN11408.1.
CCDSiCCDS21308.1. [Q761V0-2]
UniGeneiMm.207053.

Genome annotation databases

UCSCiuc012fle.1. mouse. [Q761V0-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB118159 mRNA. Translation: BAD16781.1 .
AF411042 mRNA. Translation: AAL17054.1 .
AY147186 mRNA. Translation: AAN11408.1 .
CCDSi CCDS21308.1. [Q761V0-2 ]
UniGenei Mm.207053.

3D structure databases

ProteinModelPortali Q761V0.
SMRi Q761V0. Positions 193-759.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q761V0. 1 interaction.
MINTi MINT-4133901.

Protein family/group databases

TCDBi 2.A.22.2.6. the neurotransmitter:sodium symporter (nss) family.

PTM databases

PhosphoSitei Q761V0.

Proteomic databases

MaxQBi Q761V0.
PaxDbi Q761V0.
PRIDEi Q761V0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi uc012fle.1. mouse. [Q761V0-1 ]

Organism-specific databases

MGIi MGI:105090. Slc6a5.

Phylogenomic databases

eggNOGi COG0733.
HOGENOMi HOG000116406.
HOVERGENi HBG071421.
InParanoidi Q761V0.
PhylomeDBi Q761V0.

Miscellaneous databases

PROi Q761V0.
SOURCEi Search...

Gene expression databases

Genevestigatori Q761V0.

Family and domain databases

InterProi IPR000175. Na/ntran_symport.
[Graphical view ]
PANTHERi PTHR11616. PTHR11616. 1 hit.
Pfami PF00209. SNF. 1 hit.
[Graphical view ]
PRINTSi PR00176. NANEUSMPORT.
PROSITEi PS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS00754. NA_NEUROTRAN_SYMP_2. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Gene structure and alternative splicing of the mouse glycine transporter type-2."
    Ebihara S., Yamamoto T., Obata K., Yanagawa Y.
    Biochem. Biophys. Res. Commun. 317:857-864(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A AND B), TISSUE SPECIFICITY.
    Strain: 129/Sv.
  2. "Cloning and expression of mouse sodium-dependent glycine transporter 2 (Glyt2)."
    Liu Q.-R., Li Q.-F.
    Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM B).
    Strain: BALB/c.
    Tissue: Brain.

Entry informationi

Entry nameiSC6A5_MOUSE
AccessioniPrimary (citable) accession number: Q761V0
Secondary accession number(s): Q8CFM5, Q91ZQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 27, 2004
Last sequence update: July 5, 2004
Last modified: July 9, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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