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Protein

Craniofacial development protein 1

Gene

Cfdp1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

May play a role during embryogenesis.By similarity

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Names & Taxonomyi

Protein namesi
Recommended name:
Craniofacial development protein 1
Alternative name(s):
Bucentaur
Gene namesi
Name:Cfdp1
Synonyms:Bcnt
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 19

Organism-specific databases

RGDi735080. Cfdp1.

Subcellular locationi

  • Chromosomecentromerekinetochore By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Centromere, Chromosome, Kinetochore

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 295295Craniofacial development protein 1PRO_0000212497Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei80 – 801PhosphoserineCombined sources
Modified residuei83 – 831PhosphoserineCombined sources
Modified residuei84 – 841PhosphoserineCombined sources
Modified residuei112 – 1121PhosphoserineBy similarity
Modified residuei212 – 2121PhosphoserineBy similarity
Modified residuei246 – 2461PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ75UQ2.
PRIDEiQ75UQ2.

PTM databases

iPTMnetiQ75UQ2.
PhosphoSiteiQ75UQ2.

Expressioni

Gene expression databases

ExpressionAtlasiQ75UQ2. baseline.
GenevisibleiQ75UQ2. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026249.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini214 – 29582BCNT-CPROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni174 – 21340HydrophilicAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi2 – 108107Glu-richAdd
BLAST

Sequence similaritiesi

Contains 1 BCNT-C domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG4776. Eukaryota.
ENOG4111H9K. LUCA.
GeneTreeiENSGT00390000018141.
HOGENOMiHOG000247045.
HOVERGENiHBG081120.
InParanoidiQ75UQ2.
OMAiAGFENSG.
OrthoDBiEOG7FZ01C.
PhylomeDBiQ75UQ2.
TreeFamiTF313182.

Family and domain databases

InterProiIPR011421. BCNT-C.
IPR027124. Swc5/CFDP.
[Graphical view]
PANTHERiPTHR23227. PTHR23227. 1 hit.
PfamiPF07572. BCNT. 1 hit.
[Graphical view]
PROSITEiPS51279. BCNT_C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q75UQ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEEFDSEDFS TSDEDEDYVP SGGEYSEDDV NELVKEDEVD GEEQAEKTKG
60 70 80 90 100
KRRKAQSIPA RKRKQSGLLL DEEEDGEEDS GGSSREEDEE EQEGGLGSET
110 120 130 140 150
SRKKKEDELW ASFLNDVGTK SKAASSSQVK VAEETEETSS SKPLVKADEL
160 170 180 190 200
EKPKESEKVK ITKVFDFAGE EVRVTKEVDA TSKEAKSFLK QTEKEKPQAL
210 220 230 240 250
VTSAATPPPA GSGIKRTSGM SSLLGKIGAK KQKMSTLEKS KLDWESFKEE
260 270 280 290
EGIGEELAIH NRGKEGYIER KAFLERVDHR QFEIERDLRL SKMKP
Length:295
Mass (Da):32,969
Last modified:July 5, 2004 - v1
Checksum:i60F604F3BCED5885
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB125856 mRNA. Translation: BAD01499.1.
BC067246 mRNA. Translation: AAH67246.1.
RefSeqiNP_955410.1. NM_199378.3.
UniGeneiRn.128746.

Genome annotation databases

EnsembliENSRNOT00000026249; ENSRNOP00000026249; ENSRNOG00000019326.
GeneIDi292027.
KEGGirno:292027.
UCSCiRGD:735080. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB125856 mRNA. Translation: BAD01499.1.
BC067246 mRNA. Translation: AAH67246.1.
RefSeqiNP_955410.1. NM_199378.3.
UniGeneiRn.128746.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026249.

PTM databases

iPTMnetiQ75UQ2.
PhosphoSiteiQ75UQ2.

Proteomic databases

PaxDbiQ75UQ2.
PRIDEiQ75UQ2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000026249; ENSRNOP00000026249; ENSRNOG00000019326.
GeneIDi292027.
KEGGirno:292027.
UCSCiRGD:735080. rat.

Organism-specific databases

CTDi10428.
RGDi735080. Cfdp1.

Phylogenomic databases

eggNOGiKOG4776. Eukaryota.
ENOG4111H9K. LUCA.
GeneTreeiENSGT00390000018141.
HOGENOMiHOG000247045.
HOVERGENiHBG081120.
InParanoidiQ75UQ2.
OMAiAGFENSG.
OrthoDBiEOG7FZ01C.
PhylomeDBiQ75UQ2.
TreeFamiTF313182.

Miscellaneous databases

PROiQ75UQ2.

Gene expression databases

ExpressionAtlasiQ75UQ2. baseline.
GenevisibleiQ75UQ2. RN.

Family and domain databases

InterProiIPR011421. BCNT-C.
IPR027124. Swc5/CFDP.
[Graphical view]
PANTHERiPTHR23227. PTHR23227. 1 hit.
PfamiPF07572. BCNT. 1 hit.
[Graphical view]
PROSITEiPS51279. BCNT_C. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Diversity and analysis of novel type protein with interspersed repeated sequence region."
    Nakashima K., Kubo Y., Iwashita S.
    Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Wistar.
    Tissue: Head.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Pituitary.
  3. "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues."
    Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C., Olsen J.V.
    Nat. Commun. 3:876-876(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-80; SER-83 AND SER-84, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiCFDP1_RAT
AccessioniPrimary (citable) accession number: Q75UQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: July 5, 2004
Last modified: July 6, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.