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Protein
Submitted name:

LigC

Gene

ligC

Organism
Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
LigCImported
Gene namesi
Name:ligCImported
Ordered Locus Names:MAP_0341Imported
OrganismiMycobacterium paratuberculosis (strain ATCC BAA-968 / K-10)Imported
Taxonomic identifieri262316 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
Proteomesi
  • UP000000580 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi262316.MAP0341.

Structurei

3D structure databases

ProteinModelPortaliQ744K0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini114 – 248DNA_LIGASE_A3InterPro annotationAdd BLAST135

Phylogenomic databases

eggNOGiENOG4105GN4. Bacteria.
COG1793. LUCA.
OMAiKPMTRYF.
OrthoDBiPOG091H08HZ.

Family and domain databases

InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q744K0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLPVMPPVS PMLAKSVGAI PPAASYEPKW DGFRSICFRD GDEVELGSRN
60 70 80 90 100
ERPMTRYFPE LVAAVRAELP QRCVIDGEIV IATDHGLDFE ALQQRVHPAE
110 120 130 140 150
SRVRMLAEAT PASFIAFDLL ALGDEDYTGR PFRERRAALL EAVGGPGPSI
160 170 180 190 200
HVTPATTDLD TARRWFDEFE GAGLDGVVAK PLDITYQPDK RVMFKIKHER
210 220 230 240 250
TADCVVAGYR VHKSGADAIG SLLLGLYQDD GQLASVGVIG AFPMAERRRL
260 270 280 290 300
FTELQPLVTD FEDHPWNWAA HQAGERTPRK NEFSRWNAGK DLSFVPLRPE
310 320 330 340 350
RVVEVRYDHM EGRRFRHTAQ FNRWRPDRDP RSCTYEQLEQ PVTFRLDDIV
360
PGLGASRADH KPGKQIGAP
Length:369
Mass (Da):41,409
Last modified:July 5, 2004 - v1
Checksum:i16F4918C672B910C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016958 Genomic DNA. Translation: AAS02658.1.
RefSeqiWP_010948830.1. NC_002944.2.

Genome annotation databases

EnsemblBacteriaiAAS02658; AAS02658; MAP_0341.
GeneIDi2720969.
KEGGimpa:MAP_0341.
PATRICi17993040. VBIMycAvi108102_0363.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016958 Genomic DNA. Translation: AAS02658.1.
RefSeqiWP_010948830.1. NC_002944.2.

3D structure databases

ProteinModelPortaliQ744K0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262316.MAP0341.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS02658; AAS02658; MAP_0341.
GeneIDi2720969.
KEGGimpa:MAP_0341.
PATRICi17993040. VBIMycAvi108102_0363.

Phylogenomic databases

eggNOGiENOG4105GN4. Bacteria.
COG1793. LUCA.
OMAiKPMTRYF.
OrthoDBiPOG091H08HZ.

Family and domain databases

InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ744K0_MYCPA
AccessioniPrimary (citable) accession number: Q744K0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.