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Protein

RNA polymerase sigma factor

Gene

sigE

Organism
Bacillus cereus (strain ATCC 10987 / NRS 248)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:sigEImported
Ordered Locus Names:BCE_3949Imported
OrganismiBacillus cereus (strain ATCC 10987 / NRS 248)Imported
Taxonomic identifieri222523 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillusBacillus cereus group
ProteomesiUP000002527 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi222523.BCE_3949.

Structurei

3D structure databases

ProteinModelPortaliQ732G5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-70 factor family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1191.
HOGENOMiHOG000270274.
KOiK03091.
OMAiAINTYNP.
OrthoDBiEOG6NKR06.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR014200. RNA_pol_sigma-E.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR016263. RNA_pol_sigma_factor.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
TIGR02835. spore_sigmaE. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q732G5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMKLKFYLVY LWYKVLLKLG IKTDEIYYIG GSEALPPPLT KEEEEVLLNK
60 70 80 90 100
LPKGDQAARS LLIERNLRLV VYIARKFENT GINIEDLISI GTIGLIKAVN
110 120 130 140 150
TFNPEKKIKL ATYASRCIEN EILMHLRRNN KNRSEVSFDE PLNIDWDGNE
160 170 180 190 200
LLLSDVLGTD DDIITKDLEA TVDRHLLMKA LHQLNDREKQ IMELRFGLAG
210 220 230
GEEKTQKDVA DMLGISQSYI SRLEKRIIKR LRKEFNKMV
Length:239
Mass (Da):27,636
Last modified:July 5, 2004 - v1
Checksum:iFF552F918F933F24
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017194 Genomic DNA. Translation: AAS42852.1.
RefSeqiNP_980244.1. NC_003909.8.
WP_000976948.1. NC_003909.8.

Genome annotation databases

EnsemblBacteriaiAAS42852; AAS42852; BCE_3949.
KEGGibca:BCE_3949.
PATRICi18856554. VBIBacCer118379_3776.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017194 Genomic DNA. Translation: AAS42852.1.
RefSeqiNP_980244.1. NC_003909.8.
WP_000976948.1. NC_003909.8.

3D structure databases

ProteinModelPortaliQ732G5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi222523.BCE_3949.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS42852; AAS42852; BCE_3949.
KEGGibca:BCE_3949.
PATRICi18856554. VBIBacCer118379_3776.

Phylogenomic databases

eggNOGiCOG1191.
HOGENOMiHOG000270274.
KOiK03091.
OMAiAINTYNP.
OrthoDBiEOG6NKR06.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR014200. RNA_pol_sigma-E.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR016263. RNA_pol_sigma_factor.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
TIGR02835. spore_sigmaE. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1."
    Rasko D.A., Ravel J., Oekstad O.A., Helgason E., Cer R.Z., Jiang L., Shores K.A., Fouts D.E., Tourasse N.J., Angiuoli S.V., Kolonay J.F., Nelson W.C., Kolstoe A.-B., Fraser C.M., Read T.D.
    Nucleic Acids Res. 32:977-988(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 10987 / NRS 248Imported.

Entry informationi

Entry nameiQ732G5_BACC1
AccessioniPrimary (citable) accession number: Q732G5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 27, 2015
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.