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Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35UniRule annotation
Gene namesi
Name:rpmIUniRule annotation
Ordered Locus Names:TT_C0184
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001774422 – 6550S ribosomal protein L35Add BLAST64

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC0184.

Structurei

Secondary structure

165
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi8 – 11Combined sources4
Beta strandi14 – 16Combined sources3
Beta strandi18 – 20Combined sources3
Beta strandi22 – 25Combined sources4
Beta strandi30 – 32Combined sources3
Helixi38 – 45Combined sources8
Beta strandi46 – 49Combined sources4
Helixi52 – 58Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71a1-65[»]
4V4JX-ray3.83a1-65[»]
4V63X-ray3.21B8/D81-65[»]
4V67X-ray3.00B8/D81-65[»]
4V7PX-ray3.62B5/C52-65[»]
4V83X-ray3.50B5/D52-64[»]
4V84X-ray3.40B5/D52-64[»]
4V9JX-ray3.86B8/D82-65[»]
4V9KX-ray3.50B8/D82-65[»]
4V9LX-ray3.50B8/D82-65[»]
4V9MX-ray4.00B8/D82-65[»]
4V9NX-ray3.40B8/D82-64[»]
4V9QX-ray3.40A5/C52-64[»]
4W29X-ray3.80B8/D82-65[»]
4XEJX-ray3.80AL35/BL352-64[»]
5J4DX-ray3.10FA/KC1-65[»]
ProteinModelPortaliQ72L77.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72L77.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410868C. Bacteria.
ENOG410ZYKZ. LUCA.
OMAiHQNTGKS.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35. 1 hit.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q72L77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL
60
AKPEAERIKL LLPYE
Length:65
Mass (Da):7,484
Last modified:January 23, 2007 - v3
Checksum:i05D4C15C51166C43
GO

Sequence cautioni

The sequence AAS80532 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80532.1. Different initiation.
RefSeqiWP_011172638.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80532; AAS80532; TT_C0184.
KEGGitth:TT_C0184.
PATRICi23950761. VBITheThe54392_0185.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80532.1. Different initiation.
RefSeqiWP_011172638.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71a1-65[»]
4V4JX-ray3.83a1-65[»]
4V63X-ray3.21B8/D81-65[»]
4V67X-ray3.00B8/D81-65[»]
4V7PX-ray3.62B5/C52-65[»]
4V83X-ray3.50B5/D52-64[»]
4V84X-ray3.40B5/D52-64[»]
4V9JX-ray3.86B8/D82-65[»]
4V9KX-ray3.50B8/D82-65[»]
4V9LX-ray3.50B8/D82-65[»]
4V9MX-ray4.00B8/D82-65[»]
4V9NX-ray3.40B8/D82-64[»]
4V9QX-ray3.40A5/C52-64[»]
4W29X-ray3.80B8/D82-65[»]
4XEJX-ray3.80AL35/BL352-64[»]
5J4DX-ray3.10FA/KC1-65[»]
ProteinModelPortaliQ72L77.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0184.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS80532; AAS80532; TT_C0184.
KEGGitth:TT_C0184.
PATRICi23950761. VBITheThe54392_0185.

Phylogenomic databases

eggNOGiENOG410868C. Bacteria.
ENOG410ZYKZ. LUCA.
OMAiHQNTGKS.

Miscellaneous databases

EvolutionaryTraceiQ72L77.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35. 1 hit.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL35_THET2
AccessioniPrimary (citable) accession number: Q72L77
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 83 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.