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Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-188-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35UniRule annotation
Gene namesi
Name:rpmIUniRule annotation
Ordered Locus Names:TT_C0184
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 656450S ribosomal protein L35PRO_0000177442Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC0184.

Structurei

Secondary structure

1
65
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 114Combined sources
Beta strandi14 – 163Combined sources
Beta strandi18 – 203Combined sources
Beta strandi22 – 254Combined sources
Beta strandi30 – 323Combined sources
Helixi38 – 458Combined sources
Beta strandi46 – 494Combined sources
Helixi52 – 587Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71a1-65[»]
4V4JX-ray3.83a1-65[»]
4V63X-ray3.21B8/D81-65[»]
4V67X-ray3.00B8/D81-65[»]
4V7PX-ray3.62B5/C52-65[»]
4V83X-ray3.50B5/D52-64[»]
4V84X-ray3.40B5/D52-64[»]
4V9JX-ray3.86B8/D82-65[»]
4V9KX-ray3.50B8/D82-65[»]
4V9LX-ray3.50B8/D82-65[»]
4V9MX-ray4.00B8/D82-65[»]
4V9NX-ray3.40B8/D82-64[»]
4V9QX-ray3.40A5/C52-64[»]
4W29X-ray3.80B8/D82-65[»]
4XEJX-ray3.80AL35/BL352-64[»]
ProteinModelPortaliQ72L77.
SMRiQ72L77. Positions 1-64.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72L77.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410868C. Bacteria.
ENOG410ZYKZ. LUCA.
KOiK02916.
OMAiHQNTGKS.
OrthoDBiEOG651T3B.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q72L77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL
60
AKPEAERIKL LLPYE
Length:65
Mass (Da):7,484
Last modified:January 23, 2007 - v3
Checksum:i05D4C15C51166C43
GO

Sequence cautioni

The sequence AAS80532.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80532.1. Different initiation.
RefSeqiWP_011172638.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80532; AAS80532; TT_C0184.
KEGGitth:TTC0184.
PATRICi23950761. VBITheThe54392_0185.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80532.1. Different initiation.
RefSeqiWP_011172638.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71a1-65[»]
4V4JX-ray3.83a1-65[»]
4V63X-ray3.21B8/D81-65[»]
4V67X-ray3.00B8/D81-65[»]
4V7PX-ray3.62B5/C52-65[»]
4V83X-ray3.50B5/D52-64[»]
4V84X-ray3.40B5/D52-64[»]
4V9JX-ray3.86B8/D82-65[»]
4V9KX-ray3.50B8/D82-65[»]
4V9LX-ray3.50B8/D82-65[»]
4V9MX-ray4.00B8/D82-65[»]
4V9NX-ray3.40B8/D82-64[»]
4V9QX-ray3.40A5/C52-64[»]
4W29X-ray3.80B8/D82-65[»]
4XEJX-ray3.80AL35/BL352-64[»]
ProteinModelPortaliQ72L77.
SMRiQ72L77. Positions 1-64.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0184.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS80532; AAS80532; TT_C0184.
KEGGitth:TTC0184.
PATRICi23950761. VBITheThe54392_0185.

Phylogenomic databases

eggNOGiENOG410868C. Bacteria.
ENOG410ZYKZ. LUCA.
KOiK02916.
OMAiHQNTGKS.
OrthoDBiEOG651T3B.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-188-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72L77.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL35_THET2
AccessioniPrimary (citable) accession number: Q72L77
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: January 23, 2007
Last modified: December 9, 2015
This is version 78 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.