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Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-188-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35UniRule annotation
Gene namesi
Name:rpmIUniRule annotation
Ordered Locus Names:TT_C0184
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 656450S ribosomal protein L35PRO_0000177442Add
BLAST

Structurei

Secondary structure

1
65
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 114Combined sources
Beta strandi14 – 163Combined sources
Beta strandi18 – 203Combined sources
Beta strandi22 – 254Combined sources
Beta strandi30 – 323Combined sources
Helixi38 – 458Combined sources
Beta strandi46 – 494Combined sources
Helixi52 – 587Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71a1-65[»]
4V4JX-ray3.83a1-65[»]
4V63X-ray3.21B8/D81-65[»]
4V67X-ray3.00B8/D81-65[»]
4V7PX-ray3.62B5/C52-65[»]
4V83X-ray3.50B5/D52-64[»]
4V84X-ray3.40B5/D52-64[»]
4V9JX-ray3.86B8/D82-65[»]
4V9KX-ray3.50B8/D82-65[»]
4V9LX-ray3.50B8/D82-65[»]
4V9MX-ray4.00B8/D82-65[»]
4V9NX-ray3.40B8/D82-64[»]
4V9QX-ray3.40A5/C52-64[»]
4W29X-ray3.80B8/D82-65[»]
4XEJX-ray3.80AL35/BL352-64[»]
SMRiQ72L77. Positions 1-64.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72L77.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0291.
KOiK02916.
OMAiNTEMAGS.
OrthoDBiEOG651T3B.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q72L77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL
60
AKPEAERIKL LLPYE
Length:65
Mass (Da):7,484
Last modified:January 23, 2007 - v3
Checksum:i05D4C15C51166C43
GO

Sequence cautioni

The sequence AAS80532.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80532.1. Different initiation.
RefSeqiYP_004159.2. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80532; AAS80532; TT_C0184.
KEGGitth:TTC0184.
PATRICi23950761. VBITheThe54392_0185.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80532.1. Different initiation.
RefSeqiYP_004159.2. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71a1-65[»]
4V4JX-ray3.83a1-65[»]
4V63X-ray3.21B8/D81-65[»]
4V67X-ray3.00B8/D81-65[»]
4V7PX-ray3.62B5/C52-65[»]
4V83X-ray3.50B5/D52-64[»]
4V84X-ray3.40B5/D52-64[»]
4V9JX-ray3.86B8/D82-65[»]
4V9KX-ray3.50B8/D82-65[»]
4V9LX-ray3.50B8/D82-65[»]
4V9MX-ray4.00B8/D82-65[»]
4V9NX-ray3.40B8/D82-64[»]
4V9QX-ray3.40A5/C52-64[»]
4W29X-ray3.80B8/D82-65[»]
4XEJX-ray3.80AL35/BL352-64[»]
SMRiQ72L77. Positions 1-64.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS80532; AAS80532; TT_C0184.
KEGGitth:TTC0184.
PATRICi23950761. VBITheThe54392_0185.

Phylogenomic databases

eggNOGiCOG0291.
KOiK02916.
OMAiNTEMAGS.
OrthoDBiEOG651T3B.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-188-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72L77.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL35_THET2
AccessioniPrimary (citable) accession number: Q72L77
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: January 23, 2007
Last modified: April 29, 2015
This is version 71 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.