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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20UniRule annotation
Gene namesi
Name:rplTUniRule annotation
Ordered Locus Names:TT_C0185
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001772491 – 11850S ribosomal protein L20Add BLAST118

Proteomic databases

PRIDEiQ72L76.

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC0185.

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi9 – 20Combined sources12
Turni21 – 23Combined sources3
Helixi26 – 29Combined sources4
Helixi32 – 72Combined sources41
Helixi76 – 85Combined sources10
Helixi93 – 99Combined sources7
Helixi103 – 117Combined sources15

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71O1-118[»]
4V4JX-ray3.83O1-118[»]
4V63X-ray3.21BU/DU1-118[»]
4V67X-ray3.00BU/DU1-118[»]
4V7PX-ray3.62BQ/CQ2-118[»]
4V83X-ray3.50BQ/DQ2-118[»]
4V84X-ray3.40BQ/DQ2-118[»]
4V9JX-ray3.86BU/DU2-118[»]
4V9KX-ray3.50BU/DU2-118[»]
4V9LX-ray3.50BU/DU2-118[»]
4V9MX-ray4.00BU/DU2-118[»]
4V9NX-ray3.40BU/DU2-118[»]
4V9QX-ray3.40AQ/CQ2-118[»]
4W29X-ray3.80BU/DU2-118[»]
4XEJX-ray3.80AL20/BL202-118[»]
5J4DX-ray3.10R/WB1-118[»]
ProteinModelPortaliQ72L76.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72L76.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L20P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
KOiK02887.
OMAiRKAKEQM.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72L76-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR
60 70 80 90 100
KRRKRDFRRL WIVRINAACR QHGLNYSTFI HGLKKAGIEV DRKNLADLAV
110
REPQVFAELV ERAKAAQG
Length:118
Mass (Da):13,743
Last modified:July 5, 2004 - v1
Checksum:iA5A8B028B15145F7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80533.1.
RefSeqiWP_011172639.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80533; AAS80533; TT_C0185.
KEGGitth:TT_C0185.
PATRICi23950763. VBITheThe54392_0186.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80533.1.
RefSeqiWP_011172639.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71O1-118[»]
4V4JX-ray3.83O1-118[»]
4V63X-ray3.21BU/DU1-118[»]
4V67X-ray3.00BU/DU1-118[»]
4V7PX-ray3.62BQ/CQ2-118[»]
4V83X-ray3.50BQ/DQ2-118[»]
4V84X-ray3.40BQ/DQ2-118[»]
4V9JX-ray3.86BU/DU2-118[»]
4V9KX-ray3.50BU/DU2-118[»]
4V9LX-ray3.50BU/DU2-118[»]
4V9MX-ray4.00BU/DU2-118[»]
4V9NX-ray3.40BU/DU2-118[»]
4V9QX-ray3.40AQ/CQ2-118[»]
4W29X-ray3.80BU/DU2-118[»]
4XEJX-ray3.80AL20/BL202-118[»]
5J4DX-ray3.10R/WB1-118[»]
ProteinModelPortaliQ72L76.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0185.

Proteomic databases

PRIDEiQ72L76.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS80533; AAS80533; TT_C0185.
KEGGitth:TT_C0185.
PATRICi23950763. VBITheThe54392_0186.

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
KOiK02887.
OMAiRKAKEQM.

Miscellaneous databases

EvolutionaryTraceiQ72L76.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL20_THET2
AccessioniPrimary (citable) accession number: Q72L76
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2005
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.