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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-189-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20UniRule annotation
Gene namesi
Name:rplTUniRule annotation
Ordered Locus Names:TT_C0185
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11811850S ribosomal protein L20PRO_0000177249Add
BLAST

Proteomic databases

PRIDEiQ72L76.

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC0185.

Structurei

Secondary structure

1
118
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 2012Combined sources
Turni21 – 233Combined sources
Helixi26 – 294Combined sources
Helixi32 – 7241Combined sources
Helixi76 – 8510Combined sources
Helixi93 – 997Combined sources
Helixi103 – 11715Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71O1-118[»]
4V4JX-ray3.83O1-118[»]
4V63X-ray3.21BU/DU1-118[»]
4V67X-ray3.00BU/DU1-118[»]
4V7PX-ray3.62BQ/CQ2-118[»]
4V83X-ray3.50BQ/DQ2-118[»]
4V84X-ray3.40BQ/DQ2-118[»]
4V9JX-ray3.86BU/DU2-118[»]
4V9KX-ray3.50BU/DU2-118[»]
4V9LX-ray3.50BU/DU2-118[»]
4V9MX-ray4.00BU/DU2-118[»]
4V9NX-ray3.40BU/DU2-118[»]
4V9QX-ray3.40AQ/CQ2-118[»]
4W29X-ray3.80BU/DU2-118[»]
4XEJX-ray3.80AL20/BL202-118[»]
ProteinModelPortaliQ72L76.
SMRiQ72L76. Positions 2-118.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72L76.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L20P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0292.
KOiK02887.
OMAiGRRKNVW.
OrthoDBiEOG6CGCMB.

Family and domain databases

HAMAPiMF_00382. Ribosomal_L20.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72L76-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR
60 70 80 90 100
KRRKRDFRRL WIVRINAACR QHGLNYSTFI HGLKKAGIEV DRKNLADLAV
110
REPQVFAELV ERAKAAQG
Length:118
Mass (Da):13,743
Last modified:July 5, 2004 - v1
Checksum:iA5A8B028B15145F7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80533.1.
RefSeqiWP_011172639.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80533; AAS80533; TT_C0185.
KEGGitth:TTC0185.
PATRICi23950763. VBITheThe54392_0186.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS80533.1.
RefSeqiWP_011172639.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71O1-118[»]
4V4JX-ray3.83O1-118[»]
4V63X-ray3.21BU/DU1-118[»]
4V67X-ray3.00BU/DU1-118[»]
4V7PX-ray3.62BQ/CQ2-118[»]
4V83X-ray3.50BQ/DQ2-118[»]
4V84X-ray3.40BQ/DQ2-118[»]
4V9JX-ray3.86BU/DU2-118[»]
4V9KX-ray3.50BU/DU2-118[»]
4V9LX-ray3.50BU/DU2-118[»]
4V9MX-ray4.00BU/DU2-118[»]
4V9NX-ray3.40BU/DU2-118[»]
4V9QX-ray3.40AQ/CQ2-118[»]
4W29X-ray3.80BU/DU2-118[»]
4XEJX-ray3.80AL20/BL202-118[»]
ProteinModelPortaliQ72L76.
SMRiQ72L76. Positions 2-118.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0185.

Proteomic databases

PRIDEiQ72L76.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS80533; AAS80533; TT_C0185.
KEGGitth:TTC0185.
PATRICi23950763. VBITheThe54392_0186.

Phylogenomic databases

eggNOGiCOG0292.
KOiK02887.
OMAiGRRKNVW.
OrthoDBiEOG6CGCMB.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-189-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72L76.

Family and domain databases

HAMAPiMF_00382. Ribosomal_L20.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL20_THET2
AccessioniPrimary (citable) accession number: Q72L76
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2005
Last sequence update: July 5, 2004
Last modified: July 22, 2015
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.