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Q72L76

- RL20_THET2

UniProt

Q72L76 - RL20_THET2

Protein

50S ribosomal protein L20

Gene

rplT

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-189-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L20UniRule annotation
    Gene namesi
    Name:rplTUniRule annotation
    Ordered Locus Names:TT_C0185
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 11811850S ribosomal protein L20PRO_0000177249Add
    BLAST

    Proteomic databases

    PRIDEiQ72L76.

    Interactioni

    Protein-protein interaction databases

    STRINGi262724.TTC0185.

    Structurei

    Secondary structure

    1
    118
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi9 – 2012
    Turni21 – 233
    Helixi26 – 294
    Helixi32 – 7241
    Helixi76 – 8510
    Helixi93 – 997
    Helixi103 – 11715

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71O1-118[»]
    1VSPX-ray3.83O1-118[»]
    3D5BX-ray3.21U1-118[»]
    3D5DX-ray3.21U1-118[»]
    3F1FX-ray3.00U1-118[»]
    3F1HX-ray3.00U1-118[»]
    3MRZX-ray3.62Q2-118[»]
    3MS1X-ray3.62Q2-118[»]
    3PYOX-ray3.50Q2-118[»]
    3PYRX-ray3.50Q2-118[»]
    3PYTX-ray3.40Q2-118[»]
    3PYVX-ray3.40Q2-118[»]
    4KBUX-ray3.86U2-118[»]
    4KBWX-ray3.86U2-118[»]
    4KCZX-ray3.50U2-118[»]
    4KD2X-ray3.50U2-118[»]
    4KD9X-ray3.50U2-118[»]
    4KDBX-ray3.50U2-118[»]
    4KDHX-ray4.00U2-118[»]
    4KDKX-ray4.00U2-118[»]
    4KFIX-ray3.40U2-118[»]
    4KFLX-ray3.40U2-118[»]
    4L6JX-ray3.40Q2-118[»]
    4L6LX-ray3.40Q2-118[»]
    ProteinModelPortaliQ72L76.
    SMRiQ72L76. Positions 2-118.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72L76.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L20P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0292.
    KOiK02887.
    OMAiLECDRIS.
    OrthoDBiEOG6CGCMB.

    Family and domain databases

    HAMAPiMF_00382. Ribosomal_L20.
    InterProiIPR005813. Ribosomal_L20.
    [Graphical view]
    PANTHERiPTHR10986. PTHR10986. 1 hit.
    PfamiPF00453. Ribosomal_L20. 1 hit.
    [Graphical view]
    PRINTSiPR00062. RIBOSOMALL20.
    TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
    PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q72L76-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR    50
    KRRKRDFRRL WIVRINAACR QHGLNYSTFI HGLKKAGIEV DRKNLADLAV 100
    REPQVFAELV ERAKAAQG 118
    Length:118
    Mass (Da):13,743
    Last modified:July 5, 2004 - v1
    Checksum:iA5A8B028B15145F7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS80533.1.
    RefSeqiYP_004160.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS80533; AAS80533; TT_C0185.
    GeneIDi2774485.
    KEGGitth:TTC0185.
    PATRICi23950763. VBITheThe54392_0186.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS80533.1 .
    RefSeqi YP_004160.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 O 1-118 [» ]
    1VSP X-ray 3.83 O 1-118 [» ]
    3D5B X-ray 3.21 U 1-118 [» ]
    3D5D X-ray 3.21 U 1-118 [» ]
    3F1F X-ray 3.00 U 1-118 [» ]
    3F1H X-ray 3.00 U 1-118 [» ]
    3MRZ X-ray 3.62 Q 2-118 [» ]
    3MS1 X-ray 3.62 Q 2-118 [» ]
    3PYO X-ray 3.50 Q 2-118 [» ]
    3PYR X-ray 3.50 Q 2-118 [» ]
    3PYT X-ray 3.40 Q 2-118 [» ]
    3PYV X-ray 3.40 Q 2-118 [» ]
    4KBU X-ray 3.86 U 2-118 [» ]
    4KBW X-ray 3.86 U 2-118 [» ]
    4KCZ X-ray 3.50 U 2-118 [» ]
    4KD2 X-ray 3.50 U 2-118 [» ]
    4KD9 X-ray 3.50 U 2-118 [» ]
    4KDB X-ray 3.50 U 2-118 [» ]
    4KDH X-ray 4.00 U 2-118 [» ]
    4KDK X-ray 4.00 U 2-118 [» ]
    4KFI X-ray 3.40 U 2-118 [» ]
    4KFL X-ray 3.40 U 2-118 [» ]
    4L6J X-ray 3.40 Q 2-118 [» ]
    4L6L X-ray 3.40 Q 2-118 [» ]
    ProteinModelPortali Q72L76.
    SMRi Q72L76. Positions 2-118.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC0185.

    Proteomic databases

    PRIDEi Q72L76.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS80533 ; AAS80533 ; TT_C0185 .
    GeneIDi 2774485.
    KEGGi tth:TTC0185.
    PATRICi 23950763. VBITheThe54392_0186.

    Phylogenomic databases

    eggNOGi COG0292.
    KOi K02887.
    OMAi LECDRIS.
    OrthoDBi EOG6CGCMB.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-189-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72L76.

    Family and domain databases

    HAMAPi MF_00382. Ribosomal_L20.
    InterProi IPR005813. Ribosomal_L20.
    [Graphical view ]
    PANTHERi PTHR10986. PTHR10986. 1 hit.
    Pfami PF00453. Ribosomal_L20. 1 hit.
    [Graphical view ]
    PRINTSi PR00062. RIBOSOMALL20.
    TIGRFAMsi TIGR01032. rplT_bact. 1 hit.
    PROSITEi PS00937. RIBOSOMAL_L20. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL20_THET2
    AccessioniPrimary (citable) accession number: Q72L76
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 1, 2005
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3