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Protein

50S ribosomal protein L19

Gene

rplS

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L19UniRule annotation
Gene namesi
Name:rplSUniRule annotation
Ordered Locus Names:TT_C0669
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001635571 – 14650S ribosomal protein L19Add BLAST146

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC0669.

Structurei

Secondary structure

1146
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 11Combined sources8
Beta strandi24 – 32Combined sources9
Beta strandi37 – 40Combined sources4
Beta strandi44 – 53Combined sources10
Beta strandi56 – 58Combined sources3
Beta strandi60 – 65Combined sources6
Helixi67 – 69Combined sources3
Beta strandi72 – 77Combined sources6
Beta strandi83 – 88Combined sources6
Beta strandi95 – 98Combined sources4
Helixi100 – 105Combined sources6
Helixi108 – 111Combined sources4
Helixi118 – 136Combined sources19

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71N1-146[»]
4V4JX-ray3.83N1-146[»]
4V63X-ray3.21BT/DT1-146[»]
4V67X-ray3.00BT/DT1-146[»]
4V7PX-ray3.62BP/CP1-146[»]
4V83X-ray3.50BP/DP1-137[»]
4V84X-ray3.40BP/DP1-137[»]
4V9JX-ray3.86BT/DT1-138[»]
4V9KX-ray3.50BT/DT1-138[»]
4V9LX-ray3.50BT/DT1-138[»]
4V9MX-ray4.00BT/DT1-138[»]
4V9NX-ray3.40BT/DT1-137[»]
4V9QX-ray3.40AP/CP1-137[»]
4W29X-ray3.80BT/DT1-138[»]
4XEJX-ray3.80AL19/BL191-137[»]
5J4DX-ray3.10Q/VB1-146[»]
ProteinModelPortaliQ72JU9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72JU9.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L19P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108YY1. Bacteria.
COG0335. LUCA.
KOiK02884.
OMAiIENSSAM.

Family and domain databases

HAMAPiMF_00402. Ribosomal_L19. 1 hit.
InterProiIPR001857. Ribosomal_L19.
IPR018257. Ribosomal_L19_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR15680. PTHR15680. 1 hit.
PfamiPF01245. Ribosomal_L19. 1 hit.
[Graphical view]
PIRSFiPIRSF002191. Ribosomal_L19. 1 hit.
PRINTSiPR00061. RIBOSOMALL19.
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01024. rplS_bact. 1 hit.
PROSITEiPS01015. RIBOSOMAL_L19. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72JU9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRGALIKLV ESRYVRTDLP EFRPGDTVRV SYKVKEGNRT RIQDFEGIVI
60 70 80 90 100
RIRRNGFNTT FTVRKVSYGV GVERIFPLHS PLIQKIDIVQ RGRARRAKLY
110 120 130 140
FIRNLSDREI RRKLRADRKR IDKDRAAERA AKEEVQKAQE PEASQE
Length:146
Mass (Da):17,181
Last modified:July 5, 2004 - v1
Checksum:iB026C35B0BBAF6B7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81017.1.
RefSeqiWP_011173112.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81017; AAS81017; TT_C0669.
KEGGitth:TT_C0669.
PATRICi23951743. VBITheThe54392_0666.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81017.1.
RefSeqiWP_011173112.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71N1-146[»]
4V4JX-ray3.83N1-146[»]
4V63X-ray3.21BT/DT1-146[»]
4V67X-ray3.00BT/DT1-146[»]
4V7PX-ray3.62BP/CP1-146[»]
4V83X-ray3.50BP/DP1-137[»]
4V84X-ray3.40BP/DP1-137[»]
4V9JX-ray3.86BT/DT1-138[»]
4V9KX-ray3.50BT/DT1-138[»]
4V9LX-ray3.50BT/DT1-138[»]
4V9MX-ray4.00BT/DT1-138[»]
4V9NX-ray3.40BT/DT1-137[»]
4V9QX-ray3.40AP/CP1-137[»]
4W29X-ray3.80BT/DT1-138[»]
4XEJX-ray3.80AL19/BL191-137[»]
5J4DX-ray3.10Q/VB1-146[»]
ProteinModelPortaliQ72JU9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0669.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81017; AAS81017; TT_C0669.
KEGGitth:TT_C0669.
PATRICi23951743. VBITheThe54392_0666.

Phylogenomic databases

eggNOGiENOG4108YY1. Bacteria.
COG0335. LUCA.
KOiK02884.
OMAiIENSSAM.

Miscellaneous databases

EvolutionaryTraceiQ72JU9.

Family and domain databases

HAMAPiMF_00402. Ribosomal_L19. 1 hit.
InterProiIPR001857. Ribosomal_L19.
IPR018257. Ribosomal_L19_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR15680. PTHR15680. 1 hit.
PfamiPF01245. Ribosomal_L19. 1 hit.
[Graphical view]
PIRSFiPIRSF002191. Ribosomal_L19. 1 hit.
PRINTSiPR00061. RIBOSOMALL19.
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01024. rplS_bact. 1 hit.
PROSITEiPS01015. RIBOSOMAL_L19. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL19_THET2
AccessioniPrimary (citable) accession number: Q72JU9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 21, 2004
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.