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Q72JR0

- RL31_THET2

UniProt

Q72JR0 - RL31_THET2

Protein

50S ribosomal protein L31

Gene

rpmE

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Binds the 23S rRNA.UniRule annotation

    Cofactori

    Binds 1 zinc ion per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi16 – 161ZincUniRule annotation
    Metal bindingi18 – 181ZincUniRule annotation
    Metal bindingi36 – 361ZincUniRule annotation
    Metal bindingi39 – 391ZincUniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. rRNA binding Source: UniProtKB-KW
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    Metal-binding, RNA-binding, rRNA-binding, Zinc

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-722-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L31UniRule annotation
    Gene namesi
    Name:rpmEUniRule annotation
    Ordered Locus Names:TT_C0708
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 717150S ribosomal protein L31PRO_0000173170Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi262724.TTC0708.

    Structurei

    Secondary structure

    1
    71
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi3 – 53
    Beta strandi13 – 164
    Beta strandi19 – 235
    Beta strandi27 – 293
    Beta strandi31 – 355

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3D5BX-ray3.2142-71[»]
    3D5DX-ray3.2142-71[»]
    3F1FX-ray3.0042-71[»]
    3F1HX-ray3.0042-71[»]
    3MRZX-ray3.6211-71[»]
    3MS1X-ray3.6211-71[»]
    3PYOX-ray3.50110-39[»]
    3PYRX-ray3.50110-39[»]
    3PYTX-ray3.40110-39[»]
    3PYVX-ray3.40110-39[»]
    4KBUX-ray3.8641-35[»]
    4KBWX-ray3.8641-35[»]
    4KCZX-ray3.5041-35[»]
    4KD2X-ray3.5041-35[»]
    4KD9X-ray3.5041-35[»]
    4KDBX-ray3.5041-35[»]
    4KDHX-ray4.0041-35[»]
    4KDKX-ray4.0041-35[»]
    4KFIX-ray3.40410-39[»]
    4KFLX-ray3.40410-39[»]
    4L6JX-ray3.40110-39[»]
    4L6LX-ray3.40110-39[»]
    ProteinModelPortaliQ72JR0.
    SMRiQ72JR0. Positions 1-71.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72JR0.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L31P family. Type A subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0254.
    KOiK02909.
    OMAiHEDSTIN.
    OrthoDBiEOG6DVJZM.

    Family and domain databases

    HAMAPiMF_00501. Ribosomal_L31_1.
    InterProiIPR002150. Ribosomal_L31.
    IPR027491. Ribosomal_L31_A.
    [Graphical view]
    PfamiPF01197. Ribosomal_L31. 1 hit.
    [Graphical view]
    PRINTSiPR01249. RIBOSOMALL31.
    TIGRFAMsiTIGR00105. L31. 1 hit.
    PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q72JR0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV   50
    DTEGRVERFQ RRYGDSYRKG R 71
    Length:71
    Mass (Da):8,286
    Last modified:August 16, 2005 - v2
    Checksum:i1172052DBDBA687A
    GO

    Sequence cautioni

    The sequence AAS81056.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81056.1. Different initiation.
    RefSeqiYP_004683.2. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81056; AAS81056; TT_C0708.
    GeneIDi2775658.
    KEGGitth:TTC0708.
    PATRICi23951821. VBITheThe54392_0705.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81056.1 . Different initiation.
    RefSeqi YP_004683.2. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3D5B X-ray 3.21 4 2-71 [» ]
    3D5D X-ray 3.21 4 2-71 [» ]
    3F1F X-ray 3.00 4 2-71 [» ]
    3F1H X-ray 3.00 4 2-71 [» ]
    3MRZ X-ray 3.62 1 1-71 [» ]
    3MS1 X-ray 3.62 1 1-71 [» ]
    3PYO X-ray 3.50 1 10-39 [» ]
    3PYR X-ray 3.50 1 10-39 [» ]
    3PYT X-ray 3.40 1 10-39 [» ]
    3PYV X-ray 3.40 1 10-39 [» ]
    4KBU X-ray 3.86 4 1-35 [» ]
    4KBW X-ray 3.86 4 1-35 [» ]
    4KCZ X-ray 3.50 4 1-35 [» ]
    4KD2 X-ray 3.50 4 1-35 [» ]
    4KD9 X-ray 3.50 4 1-35 [» ]
    4KDB X-ray 3.50 4 1-35 [» ]
    4KDH X-ray 4.00 4 1-35 [» ]
    4KDK X-ray 4.00 4 1-35 [» ]
    4KFI X-ray 3.40 4 10-39 [» ]
    4KFL X-ray 3.40 4 10-39 [» ]
    4L6J X-ray 3.40 1 10-39 [» ]
    4L6L X-ray 3.40 1 10-39 [» ]
    ProteinModelPortali Q72JR0.
    SMRi Q72JR0. Positions 1-71.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC0708.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81056 ; AAS81056 ; TT_C0708 .
    GeneIDi 2775658.
    KEGGi tth:TTC0708.
    PATRICi 23951821. VBITheThe54392_0705.

    Phylogenomic databases

    eggNOGi COG0254.
    KOi K02909.
    OMAi HEDSTIN.
    OrthoDBi EOG6DVJZM.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-722-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72JR0.

    Family and domain databases

    HAMAPi MF_00501. Ribosomal_L31_1.
    InterProi IPR002150. Ribosomal_L31.
    IPR027491. Ribosomal_L31_A.
    [Graphical view ]
    Pfami PF01197. Ribosomal_L31. 1 hit.
    [Graphical view ]
    PRINTSi PR01249. RIBOSOMALL31.
    TIGRFAMsi TIGR00105. L31. 1 hit.
    PROSITEi PS01143. RIBOSOMAL_L31. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL31_THET2
    AccessioniPrimary (citable) accession number: Q72JR0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 16, 2005
    Last sequence update: August 16, 2005
    Last modified: October 1, 2014
    This is version 61 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3