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Protein

50S ribosomal protein L31

Gene

rpmE

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds the 23S rRNA.UniRule annotation

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi16 – 161ZincUniRule annotation
Metal bindingi18 – 181ZincUniRule annotation
Metal bindingi36 – 361ZincUniRule annotation
Metal bindingi39 – 391ZincUniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. rRNA binding Source: UniProtKB-KW
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, RNA-binding, rRNA-binding, Zinc

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-722-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L31UniRule annotation
Gene namesi
Name:rpmEUniRule annotation
Ordered Locus Names:TT_C0708
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 717150S ribosomal protein L31PRO_0000173170Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC0708.

Structurei

Secondary structure

1
71
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 53Combined sources
Beta strandi13 – 164Combined sources
Beta strandi19 – 235Combined sources
Beta strandi27 – 293Combined sources
Beta strandi31 – 355Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V63X-ray3.21B4/D42-71[»]
4V67X-ray3.00B4/D42-71[»]
4V7PX-ray3.62B1/C11-71[»]
4V83X-ray3.50B1/D110-39[»]
4V84X-ray3.40B1/D110-39[»]
4V9JX-ray3.86B4/D41-35[»]
4V9KX-ray3.50B4/D41-35[»]
4V9LX-ray3.50B4/D41-35[»]
4V9MX-ray4.00B4/D41-35[»]
4V9NX-ray3.40B4/D410-39[»]
4V9QX-ray3.40A1/C110-39[»]
4W29X-ray3.80B4/D41-35[»]
4XEJX-ray3.80AL31/BL3110-39[»]
ProteinModelPortaliQ72JR0.
SMRiQ72JR0. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72JR0.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L31P family. Type A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0254.
KOiK02909.
OMAiCACGNEI.
OrthoDBiEOG6DVJZM.

Family and domain databases

HAMAPiMF_00501. Ribosomal_L31_1.
InterProiIPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view]
PfamiPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSiPR01249. RIBOSOMALL31.
TIGRFAMsiTIGR00105. L31. 1 hit.
PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72JR0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV
60 70
DTEGRVERFQ RRYGDSYRKG R
Length:71
Mass (Da):8,286
Last modified:August 16, 2005 - v2
Checksum:i1172052DBDBA687A
GO

Sequence cautioni

The sequence AAS81056.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81056.1. Different initiation.
RefSeqiYP_004683.2. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81056; AAS81056; TT_C0708.
KEGGitth:TTC0708.
PATRICi23951821. VBITheThe54392_0705.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81056.1. Different initiation.
RefSeqiYP_004683.2. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V63X-ray3.21B4/D42-71[»]
4V67X-ray3.00B4/D42-71[»]
4V7PX-ray3.62B1/C11-71[»]
4V83X-ray3.50B1/D110-39[»]
4V84X-ray3.40B1/D110-39[»]
4V9JX-ray3.86B4/D41-35[»]
4V9KX-ray3.50B4/D41-35[»]
4V9LX-ray3.50B4/D41-35[»]
4V9MX-ray4.00B4/D41-35[»]
4V9NX-ray3.40B4/D410-39[»]
4V9QX-ray3.40A1/C110-39[»]
4W29X-ray3.80B4/D41-35[»]
4XEJX-ray3.80AL31/BL3110-39[»]
ProteinModelPortaliQ72JR0.
SMRiQ72JR0. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0708.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81056; AAS81056; TT_C0708.
KEGGitth:TTC0708.
PATRICi23951821. VBITheThe54392_0705.

Phylogenomic databases

eggNOGiCOG0254.
KOiK02909.
OMAiCACGNEI.
OrthoDBiEOG6DVJZM.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-722-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72JR0.

Family and domain databases

HAMAPiMF_00501. Ribosomal_L31_1.
InterProiIPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view]
PfamiPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSiPR01249. RIBOSOMALL31.
TIGRFAMsiTIGR00105. L31. 1 hit.
PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL31_THET2
AccessioniPrimary (citable) accession number: Q72JR0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: August 16, 2005
Last modified: April 29, 2015
This is version 67 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.