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Q72IN1

- RL13_THET2

UniProt

Q72IN1 - RL13_THET2

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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1113-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:TT_C1101
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14014050S ribosomal protein L13PRO_0000261816Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1101.

Structurei

Secondary structure

1
140
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi14 – 163
Helixi23 – 3412
Helixi36 – 383
Turni44 – 463
Beta strandi52 – 543
Helixi57 – 593
Helixi66 – 694
Beta strandi71 – 733
Beta strandi84 – 863
Helixi87 – 926
Helixi96 – 1049
Helixi111 – 1188
Beta strandi120 – 1223
Beta strandi124 – 1263

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71H2-140[»]
1VSPX-ray3.83H2-140[»]
3D5BX-ray3.21N2-140[»]
3D5DX-ray3.21N2-140[»]
3F1FX-ray3.00N2-140[»]
3F1HX-ray3.00N2-140[»]
3MRZX-ray3.62J2-140[»]
3MS1X-ray3.62J2-140[»]
3PYOX-ray3.50J2-138[»]
3PYRX-ray3.50J2-138[»]
3PYTX-ray3.40J2-138[»]
3PYVX-ray3.40J2-138[»]
4KBUX-ray3.86N1-138[»]
4KBWX-ray3.86N1-138[»]
4KCZX-ray3.50N1-138[»]
4KD2X-ray3.50N1-138[»]
4KD9X-ray3.50N1-138[»]
4KDBX-ray3.50N1-138[»]
4KDHX-ray4.00N1-138[»]
4KDKX-ray4.00N1-138[»]
4KFIX-ray3.40N2-138[»]
4KFLX-ray3.40N2-138[»]
4L6JX-ray3.40J2-138[»]
4L6LX-ray3.40J2-138[»]
ProteinModelPortaliQ72IN1.
SMRiQ72IN1. Positions 2-140.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72IN1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0102.
KOiK02871.
OMAiHKHEAQS.
OrthoDBiEOG628FBD.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72IN1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD
60 70 80 90 100
FVVVVNADKI RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE
110 120 130 140
HAVKGMLPKG PLGRRLFKRL KVYAGPDHPH QAQRPEKLEV
Length:140
Mass (Da):15,895
Last modified:November 28, 2006 - v2
Checksum:i657212AE35E6F502
GO

Sequence cautioni

The sequence AAS81443.1 differs from that shown. Reason: Erroneous initiation.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81443.1. Different initiation.
RefSeqiYP_005070.2. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81443; AAS81443; TT_C1101.
GeneIDi2776066.
KEGGitth:TTC1101.
PATRICi23952605. VBITheThe54392_1093.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81443.1 . Different initiation.
RefSeqi YP_005070.2. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 H 2-140 [» ]
1VSP X-ray 3.83 H 2-140 [» ]
3D5B X-ray 3.21 N 2-140 [» ]
3D5D X-ray 3.21 N 2-140 [» ]
3F1F X-ray 3.00 N 2-140 [» ]
3F1H X-ray 3.00 N 2-140 [» ]
3MRZ X-ray 3.62 J 2-140 [» ]
3MS1 X-ray 3.62 J 2-140 [» ]
3PYO X-ray 3.50 J 2-138 [» ]
3PYR X-ray 3.50 J 2-138 [» ]
3PYT X-ray 3.40 J 2-138 [» ]
3PYV X-ray 3.40 J 2-138 [» ]
4KBU X-ray 3.86 N 1-138 [» ]
4KBW X-ray 3.86 N 1-138 [» ]
4KCZ X-ray 3.50 N 1-138 [» ]
4KD2 X-ray 3.50 N 1-138 [» ]
4KD9 X-ray 3.50 N 1-138 [» ]
4KDB X-ray 3.50 N 1-138 [» ]
4KDH X-ray 4.00 N 1-138 [» ]
4KDK X-ray 4.00 N 1-138 [» ]
4KFI X-ray 3.40 N 2-138 [» ]
4KFL X-ray 3.40 N 2-138 [» ]
4L6J X-ray 3.40 J 2-138 [» ]
4L6L X-ray 3.40 J 2-138 [» ]
ProteinModelPortali Q72IN1.
SMRi Q72IN1. Positions 2-140.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC1101.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81443 ; AAS81443 ; TT_C1101 .
GeneIDi 2776066.
KEGGi tth:TTC1101.
PATRICi 23952605. VBITheThe54392_1093.

Phylogenomic databases

eggNOGi COG0102.
KOi K02871.
OMAi HKHEAQS.
OrthoDBi EOG628FBD.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1113-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72IN1.

Family and domain databases

Gene3Di 3.90.1180.10. 1 hit.
HAMAPi MF_01366. Ribosomal_L13.
InterProi IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view ]
PANTHERi PTHR11545. PTHR11545. 1 hit.
Pfami PF00572. Ribosomal_L13. 1 hit.
[Graphical view ]
PIRSFi PIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMi SSF52161. SSF52161. 1 hit.
TIGRFAMsi TIGR01066. rplM_bact. 1 hit.
PROSITEi PS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL13_THET2
AccessioniPrimary (citable) accession number: Q72IN1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 28, 2006
Last modified: October 1, 2014
This is version 71 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3