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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1113-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:TT_C1101
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14014050S ribosomal protein L13PRO_0000261816Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1101.

Structurei

Secondary structure

1
140
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi14 – 163Combined sources
Helixi23 – 3412Combined sources
Helixi36 – 383Combined sources
Turni44 – 463Combined sources
Beta strandi52 – 543Combined sources
Helixi57 – 593Combined sources
Helixi66 – 694Combined sources
Beta strandi71 – 733Combined sources
Beta strandi84 – 863Combined sources
Helixi87 – 926Combined sources
Helixi96 – 1049Combined sources
Helixi111 – 1188Combined sources
Beta strandi120 – 1223Combined sources
Beta strandi124 – 1263Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71H2-140[»]
4V4JX-ray3.83H2-140[»]
4V63X-ray3.21BN/DN2-140[»]
4V67X-ray3.00BN/DN2-140[»]
4V7PX-ray3.62BJ/CJ2-140[»]
4V83X-ray3.50BJ/DJ2-138[»]
4V84X-ray3.40BJ/DJ2-138[»]
4V9JX-ray3.86BN/DN1-138[»]
4V9KX-ray3.50BN/DN1-138[»]
4V9LX-ray3.50BN/DN1-138[»]
4V9MX-ray4.00BN/DN1-138[»]
4V9NX-ray3.40BN/DN2-138[»]
4V9QX-ray3.40AJ/CJ2-138[»]
4W29X-ray3.80BN/DN1-139[»]
ProteinModelPortaliQ72IN1.
SMRiQ72IN1. Positions 2-140.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72IN1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0102.
KOiK02871.
OMAiTRDWYLV.
OrthoDBiEOG628FBD.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72IN1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD
60 70 80 90 100
FVVVVNADKI RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE
110 120 130 140
HAVKGMLPKG PLGRRLFKRL KVYAGPDHPH QAQRPEKLEV
Length:140
Mass (Da):15,895
Last modified:November 27, 2006 - v2
Checksum:i657212AE35E6F502
GO

Sequence cautioni

The sequence AAS81443.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81443.1. Different initiation.
RefSeqiYP_005070.2. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81443; AAS81443; TT_C1101.
KEGGitth:TTC1101.
PATRICi23952605. VBITheThe54392_1093.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81443.1. Different initiation.
RefSeqiYP_005070.2. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71H2-140[»]
4V4JX-ray3.83H2-140[»]
4V63X-ray3.21BN/DN2-140[»]
4V67X-ray3.00BN/DN2-140[»]
4V7PX-ray3.62BJ/CJ2-140[»]
4V83X-ray3.50BJ/DJ2-138[»]
4V84X-ray3.40BJ/DJ2-138[»]
4V9JX-ray3.86BN/DN1-138[»]
4V9KX-ray3.50BN/DN1-138[»]
4V9LX-ray3.50BN/DN1-138[»]
4V9MX-ray4.00BN/DN1-138[»]
4V9NX-ray3.40BN/DN2-138[»]
4V9QX-ray3.40AJ/CJ2-138[»]
4W29X-ray3.80BN/DN1-139[»]
ProteinModelPortaliQ72IN1.
SMRiQ72IN1. Positions 2-140.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1101.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81443; AAS81443; TT_C1101.
KEGGitth:TTC1101.
PATRICi23952605. VBITheThe54392_1093.

Phylogenomic databases

eggNOGiCOG0102.
KOiK02871.
OMAiTRDWYLV.
OrthoDBiEOG628FBD.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1113-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72IN1.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL13_THET2
AccessioniPrimary (citable) accession number: Q72IN1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 27, 2006
Last sequence update: November 27, 2006
Last modified: March 31, 2015
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.