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Q72IN1

- RL13_THET2

UniProt

Q72IN1 - RL13_THET2

Protein

50S ribosomal protein L13

Gene

rplM

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 2 (28 Nov 2006)
      Previous versions | rss
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    Functioni

    This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1113-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L13UniRule annotation
    Gene namesi
    Name:rplMUniRule annotation
    Ordered Locus Names:TT_C1101
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 14014050S ribosomal protein L13PRO_0000261816Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi262724.TTC1101.

    Structurei

    Secondary structure

    1
    140
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi14 – 163
    Helixi23 – 3412
    Helixi36 – 383
    Turni44 – 463
    Beta strandi52 – 543
    Helixi57 – 593
    Helixi66 – 694
    Beta strandi71 – 733
    Beta strandi84 – 863
    Helixi87 – 926
    Helixi96 – 1049
    Helixi111 – 1188
    Beta strandi120 – 1223
    Beta strandi124 – 1263

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71H2-140[»]
    1VSPX-ray3.83H2-140[»]
    3D5BX-ray3.21N2-140[»]
    3D5DX-ray3.21N2-140[»]
    3F1FX-ray3.00N2-140[»]
    3F1HX-ray3.00N2-140[»]
    3MRZX-ray3.62J2-140[»]
    3MS1X-ray3.62J2-140[»]
    3PYOX-ray3.50J2-138[»]
    3PYRX-ray3.50J2-138[»]
    3PYTX-ray3.40J2-138[»]
    3PYVX-ray3.40J2-138[»]
    4KBUX-ray3.86N1-138[»]
    4KBWX-ray3.86N1-138[»]
    4KCZX-ray3.50N1-138[»]
    4KD2X-ray3.50N1-138[»]
    4KD9X-ray3.50N1-138[»]
    4KDBX-ray3.50N1-138[»]
    4KDHX-ray4.00N1-138[»]
    4KDKX-ray4.00N1-138[»]
    4KFIX-ray3.40N2-138[»]
    4KFLX-ray3.40N2-138[»]
    4L6JX-ray3.40J2-138[»]
    4L6LX-ray3.40J2-138[»]
    ProteinModelPortaliQ72IN1.
    SMRiQ72IN1. Positions 2-140.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72IN1.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L13P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0102.
    KOiK02871.
    OMAiHKHEAQS.
    OrthoDBiEOG628FBD.

    Family and domain databases

    Gene3Di3.90.1180.10. 1 hit.
    HAMAPiMF_01366. Ribosomal_L13.
    InterProiIPR005822. Ribosomal_L13.
    IPR005823. Ribosomal_L13_bac-type.
    IPR023563. Ribosomal_L13_CS.
    IPR023564. Ribosomal_L13_dom.
    [Graphical view]
    PANTHERiPTHR11545. PTHR11545. 1 hit.
    PfamiPF00572. Ribosomal_L13. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
    SUPFAMiSSF52161. SSF52161. 1 hit.
    TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
    PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q72IN1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD    50
    FVVVVNADKI RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE 100
    HAVKGMLPKG PLGRRLFKRL KVYAGPDHPH QAQRPEKLEV 140
    Length:140
    Mass (Da):15,895
    Last modified:November 28, 2006 - v2
    Checksum:i657212AE35E6F502
    GO

    Sequence cautioni

    The sequence AAS81443.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81443.1. Different initiation.
    RefSeqiYP_005070.2. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81443; AAS81443; TT_C1101.
    GeneIDi2776066.
    KEGGitth:TTC1101.
    PATRICi23952605. VBITheThe54392_1093.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81443.1 . Different initiation.
    RefSeqi YP_005070.2. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 H 2-140 [» ]
    1VSP X-ray 3.83 H 2-140 [» ]
    3D5B X-ray 3.21 N 2-140 [» ]
    3D5D X-ray 3.21 N 2-140 [» ]
    3F1F X-ray 3.00 N 2-140 [» ]
    3F1H X-ray 3.00 N 2-140 [» ]
    3MRZ X-ray 3.62 J 2-140 [» ]
    3MS1 X-ray 3.62 J 2-140 [» ]
    3PYO X-ray 3.50 J 2-138 [» ]
    3PYR X-ray 3.50 J 2-138 [» ]
    3PYT X-ray 3.40 J 2-138 [» ]
    3PYV X-ray 3.40 J 2-138 [» ]
    4KBU X-ray 3.86 N 1-138 [» ]
    4KBW X-ray 3.86 N 1-138 [» ]
    4KCZ X-ray 3.50 N 1-138 [» ]
    4KD2 X-ray 3.50 N 1-138 [» ]
    4KD9 X-ray 3.50 N 1-138 [» ]
    4KDB X-ray 3.50 N 1-138 [» ]
    4KDH X-ray 4.00 N 1-138 [» ]
    4KDK X-ray 4.00 N 1-138 [» ]
    4KFI X-ray 3.40 N 2-138 [» ]
    4KFL X-ray 3.40 N 2-138 [» ]
    4L6J X-ray 3.40 J 2-138 [» ]
    4L6L X-ray 3.40 J 2-138 [» ]
    ProteinModelPortali Q72IN1.
    SMRi Q72IN1. Positions 2-140.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1101.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81443 ; AAS81443 ; TT_C1101 .
    GeneIDi 2776066.
    KEGGi tth:TTC1101.
    PATRICi 23952605. VBITheThe54392_1093.

    Phylogenomic databases

    eggNOGi COG0102.
    KOi K02871.
    OMAi HKHEAQS.
    OrthoDBi EOG628FBD.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1113-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72IN1.

    Family and domain databases

    Gene3Di 3.90.1180.10. 1 hit.
    HAMAPi MF_01366. Ribosomal_L13.
    InterProi IPR005822. Ribosomal_L13.
    IPR005823. Ribosomal_L13_bac-type.
    IPR023563. Ribosomal_L13_CS.
    IPR023564. Ribosomal_L13_dom.
    [Graphical view ]
    PANTHERi PTHR11545. PTHR11545. 1 hit.
    Pfami PF00572. Ribosomal_L13. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002181. Ribosomal_L13. 1 hit.
    SUPFAMi SSF52161. SSF52161. 1 hit.
    TIGRFAMsi TIGR01066. rplM_bact. 1 hit.
    PROSITEi PS00783. RIBOSOMAL_L13. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL13_THET2
    AccessioniPrimary (citable) accession number: Q72IN1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: November 28, 2006
    Last modified: October 1, 2014
    This is version 71 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3