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Q72IN1 (RL13_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L13
Gene names
Name:rplM
Ordered Locus Names:TT_C1101
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length140 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity. HAMAP-Rule MF_01366

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01366

Sequence similarities

Belongs to the ribosomal protein L13P family.

Sequence caution

The sequence AAS81443.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14014050S ribosomal protein L13 HAMAP-Rule MF_01366
PRO_0000261816

Secondary structure

............................ 140
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q72IN1 [UniParc].

Last modified November 28, 2006. Version 2.
Checksum: 657212AE35E6F502

FASTA14015,895
        10         20         30         40         50         60 
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD FVVVVNADKI 

        70         80         90        100        110        120 
RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE HAVKGMLPKG PLGRRLFKRL 

       130        140 
KVYAGPDHPH QAQRPEKLEV 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017221 Genomic DNA. Translation: AAS81443.1. Different initiation.
RefSeqYP_005070.2. NC_005835.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71H2-140[»]
1VSPX-ray3.83H2-140[»]
3D5BX-ray3.21N2-140[»]
3D5DX-ray3.21N2-140[»]
3F1FX-ray3.00N2-140[»]
3F1HX-ray3.00N2-140[»]
3MRZX-ray3.62J2-140[»]
3MS1X-ray3.62J2-140[»]
3PYOX-ray3.50J2-138[»]
3PYRX-ray3.50J2-138[»]
3PYTX-ray3.40J2-138[»]
3PYVX-ray3.40J2-138[»]
4KBUX-ray3.86N1-138[»]
4KBWX-ray3.86N1-138[»]
4KCZX-ray3.50N1-138[»]
4KD2X-ray3.50N1-138[»]
4KD9X-ray3.50N1-138[»]
4KDBX-ray3.50N1-138[»]
4KDHX-ray4.00N1-138[»]
4KDKX-ray4.00N1-138[»]
4KFIX-ray3.40N2-138[»]
4KFLX-ray3.40N2-138[»]
4L6JX-ray3.40J2-138[»]
4L6LX-ray3.40J2-138[»]
ProteinModelPortalQ72IN1.
SMRQ72IN1. Positions 2-140.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING262724.TTC1101.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81443; AAS81443; TT_C1101.
GeneID2776066.
KEGGtth:TTC1101.
PATRIC23952605. VBITheThe54392_1093.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0102.
KOK02871.
OMAHKHEAQS.
OrthoDBEOG628FBD.

Enzyme and pathway databases

BioCycTTHE262724:GCAT-1113-MONOMER.

Family and domain databases

Gene3D3.90.1180.10. 1 hit.
HAMAPMF_01366. Ribosomal_L13.
InterProIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERPTHR11545. PTHR11545. 1 hit.
PfamPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMSSF52161. SSF52161. 1 hit.
TIGRFAMsTIGR01066. rplM_bact. 1 hit.
PROSITEPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ72IN1.

Entry information

Entry nameRL13_THET2
AccessionPrimary (citable) accession number: Q72IN1
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 28, 2006
Last modified: May 14, 2014
This is version 70 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references