Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q72IA7 (RL25_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L25
Alternative name(s):
General stress protein CTC
Gene names
Name:rplY
Synonyms:ctc
Ordered Locus Names:TT_C1225
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity. HAMAP-Rule MF_01334

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity.

Sequence similarities

Belongs to the ribosomal protein L25P family. Ctc subfamily.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_function5S rRNA binding

Inferred from electronic annotation. Source: InterPro

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 20620650S ribosomal protein L25 HAMAP-Rule MF_01334
PRO_0000181607

Secondary structure

1 ........................................ 206
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q72IA7 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: ACC20EC1279181CD

FASTA20623,205
        10         20         30         40         50         60 
MEYRLKAYYR EGEKPSALRR AGKLPGVMYN RHLNRKVYVD LVEFDKVFRQ ASIHHVIVLE 

        70         80         90        100        110        120 
LPDGQSLPTL VRQVNLDKRR RRPEHVDFFV LSDEPVEMYV PLRFVGTPAG VRAGGVLQEI 

       130        140        150        160        170        180 
HRDILVKVSP RNIPEFIEVD VSGLEIGDSL HASDLKLPPG VELAVSPEET IAAVVPPEDV 

       190        200 
EKLAEEAAAE VAEPEVIKKG KEEEEE

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017221 Genomic DNA. Translation: AAS81567.1.
RefSeqYP_005194.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71T1-206[»]
1VSPX-ray3.83T1-206[»]
3D5BX-ray3.21Z1-206[»]
3D5DX-ray3.21Z1-206[»]
3F1FX-ray3.00Z1-206[»]
3F1HX-ray3.00Z1-206[»]
3MRZX-ray3.62V1-206[»]
3MS1X-ray3.62V1-206[»]
3PYOX-ray3.50V3-190[»]
3PYRX-ray3.50V3-190[»]
3PYTX-ray3.40V3-190[»]
3PYVX-ray3.40V3-190[»]
ProteinModelPortalQ72IA7.
SMRQ72IA7. Positions 1-185.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81567; AAS81567; TT_C1225.
GeneID2774548.
KEGGtth:TTC1225.
PATRIC23952857. VBITheThe54392_1217.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1825.
KOK02897.
OMAELIMKKG.
ProtClustDBPRK05618.

Family and domain databases

Gene3D2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPMF_01334. Ribosomal_L25_CTC.
InterProIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view]
PfamPF01386. Ribosomal_L25p. 1 hit.
[Graphical view]
ProDomPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50715. Ribosomal_L25rel. 1 hit.
TIGRFAMsTIGR00731. ctc_TL5. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ72IA7.

Entry information

Entry nameRL25_THET2
AccessionPrimary (citable) accession number: Q72IA7
Entry history
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 5, 2004
Last modified: May 1, 2013
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents