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Q72IA7

- RL25_THET2

UniProt

Q72IA7 - RL25_THET2

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Protein

50S ribosomal protein L25

Gene

rplY

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1240-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25UniRule annotation
Alternative name(s):
General stress protein CTCUniRule annotation
Gene namesi
Name:rplYUniRule annotation
Synonyms:ctcUniRule annotation
Ordered Locus Names:TT_C1225
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20620650S ribosomal protein L25PRO_0000181607Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

Structurei

Secondary structure

1
206
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 63
Beta strandi11 – 133
Helixi15 – 217
Beta strandi23 – 297
Beta strandi34 – 407
Helixi41 – 5111
Turni52 – 543
Beta strandi57 – 604
Beta strandi66 – 7611
Beta strandi78 – 803
Beta strandi83 – 908
Beta strandi96 – 1016
Beta strandi102 – 1054
Helixi109 – 1124
Beta strandi116 – 1183
Beta strandi122 – 1287
Beta strandi137 – 1393
Beta strandi149 – 1513
Helixi152 – 1543
Beta strandi162 – 1654
Beta strandi170 – 1756
Helixi181 – 1888

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71T1-206[»]
1VSPX-ray3.83T1-206[»]
3D5BX-ray3.21Z1-206[»]
3D5DX-ray3.21Z1-206[»]
3F1FX-ray3.00Z1-206[»]
3F1HX-ray3.00Z1-206[»]
3MRZX-ray3.62V1-206[»]
3MS1X-ray3.62V1-206[»]
3PYOX-ray3.50V3-190[»]
3PYRX-ray3.50V3-190[»]
3PYTX-ray3.40V3-190[»]
3PYVX-ray3.40V3-190[»]
4KBUX-ray3.86Z3-187[»]
4KBWX-ray3.86Z3-187[»]
4KCZX-ray3.50Z3-187[»]
4KD2X-ray3.50Z3-187[»]
4KD9X-ray3.50Z3-187[»]
4KDBX-ray3.50Z3-187[»]
4KDHX-ray4.00Z3-187[»]
4KDKX-ray4.00Z3-187[»]
4KFIX-ray3.40Z3-189[»]
4KFLX-ray3.40Z3-189[»]
4L6JX-ray3.40V3-189[»]
4L6LX-ray3.40V3-189[»]
ProteinModelPortaliQ72IA7.
SMRiQ72IA7. Positions 1-185.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72IA7.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG1825.
KOiK02897.
OMAiCIGVKLG.
OrthoDBiEOG6SZ1PC.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01334. Ribosomal_L25_CTC.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
[Graphical view]
PfamiPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomiPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72IA7 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEYRLKAYYR EGEKPSALRR AGKLPGVMYN RHLNRKVYVD LVEFDKVFRQ
60 70 80 90 100
ASIHHVIVLE LPDGQSLPTL VRQVNLDKRR RRPEHVDFFV LSDEPVEMYV
110 120 130 140 150
PLRFVGTPAG VRAGGVLQEI HRDILVKVSP RNIPEFIEVD VSGLEIGDSL
160 170 180 190 200
HASDLKLPPG VELAVSPEET IAAVVPPEDV EKLAEEAAAE VAEPEVIKKG

KEEEEE
Length:206
Mass (Da):23,205
Last modified:July 5, 2004 - v1
Checksum:iACC20EC1279181CD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81567.1.
RefSeqiYP_005194.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81567; AAS81567; TT_C1225.
GeneIDi2774548.
KEGGitth:TTC1225.
PATRICi23952857. VBITheThe54392_1217.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81567.1 .
RefSeqi YP_005194.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 T 1-206 [» ]
1VSP X-ray 3.83 T 1-206 [» ]
3D5B X-ray 3.21 Z 1-206 [» ]
3D5D X-ray 3.21 Z 1-206 [» ]
3F1F X-ray 3.00 Z 1-206 [» ]
3F1H X-ray 3.00 Z 1-206 [» ]
3MRZ X-ray 3.62 V 1-206 [» ]
3MS1 X-ray 3.62 V 1-206 [» ]
3PYO X-ray 3.50 V 3-190 [» ]
3PYR X-ray 3.50 V 3-190 [» ]
3PYT X-ray 3.40 V 3-190 [» ]
3PYV X-ray 3.40 V 3-190 [» ]
4KBU X-ray 3.86 Z 3-187 [» ]
4KBW X-ray 3.86 Z 3-187 [» ]
4KCZ X-ray 3.50 Z 3-187 [» ]
4KD2 X-ray 3.50 Z 3-187 [» ]
4KD9 X-ray 3.50 Z 3-187 [» ]
4KDB X-ray 3.50 Z 3-187 [» ]
4KDH X-ray 4.00 Z 3-187 [» ]
4KDK X-ray 4.00 Z 3-187 [» ]
4KFI X-ray 3.40 Z 3-189 [» ]
4KFL X-ray 3.40 Z 3-189 [» ]
4L6J X-ray 3.40 V 3-189 [» ]
4L6L X-ray 3.40 V 3-189 [» ]
ProteinModelPortali Q72IA7.
SMRi Q72IA7. Positions 1-185.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81567 ; AAS81567 ; TT_C1225 .
GeneIDi 2774548.
KEGGi tth:TTC1225.
PATRICi 23952857. VBITheThe54392_1217.

Phylogenomic databases

eggNOGi COG1825.
KOi K02897.
OMAi CIGVKLG.
OrthoDBi EOG6SZ1PC.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1240-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72IA7.

Family and domain databases

Gene3Di 2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPi MF_01334. Ribosomal_L25_CTC.
InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
[Graphical view ]
Pfami PF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view ]
ProDomi PD012503. Ribosomal_L25. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF50715. SSF50715. 1 hit.
TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL25_THET2
AccessioniPrimary (citable) accession number: Q72IA7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 5, 2004
Last modified: October 29, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3