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Q72IA7

- RL25_THET2

UniProt

Q72IA7 - RL25_THET2

Protein

50S ribosomal protein L25

Gene

rplY

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 73 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1240-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L25UniRule annotation
    Alternative name(s):
    General stress protein CTCUniRule annotation
    Gene namesi
    Name:rplYUniRule annotation
    Synonyms:ctcUniRule annotation
    Ordered Locus Names:TT_C1225
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20620650S ribosomal protein L25PRO_0000181607Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

    Structurei

    Secondary structure

    1
    206
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi4 – 63
    Beta strandi11 – 133
    Helixi15 – 217
    Beta strandi23 – 297
    Beta strandi34 – 407
    Helixi41 – 5111
    Turni52 – 543
    Beta strandi57 – 604
    Beta strandi66 – 7611
    Beta strandi78 – 803
    Beta strandi83 – 908
    Beta strandi96 – 1016
    Beta strandi102 – 1054
    Helixi109 – 1124
    Beta strandi116 – 1183
    Beta strandi122 – 1287
    Beta strandi137 – 1393
    Beta strandi149 – 1513
    Helixi152 – 1543
    Beta strandi162 – 1654
    Beta strandi170 – 1756
    Helixi181 – 1888

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71T1-206[»]
    1VSPX-ray3.83T1-206[»]
    3D5BX-ray3.21Z1-206[»]
    3D5DX-ray3.21Z1-206[»]
    3F1FX-ray3.00Z1-206[»]
    3F1HX-ray3.00Z1-206[»]
    3MRZX-ray3.62V1-206[»]
    3MS1X-ray3.62V1-206[»]
    3PYOX-ray3.50V3-190[»]
    3PYRX-ray3.50V3-190[»]
    3PYTX-ray3.40V3-190[»]
    3PYVX-ray3.40V3-190[»]
    4KBUX-ray3.86Z3-187[»]
    4KBWX-ray3.86Z3-187[»]
    4KCZX-ray3.50Z3-187[»]
    4KD2X-ray3.50Z3-187[»]
    4KD9X-ray3.50Z3-187[»]
    4KDBX-ray3.50Z3-187[»]
    4KDHX-ray4.00Z3-187[»]
    4KDKX-ray4.00Z3-187[»]
    4KFIX-ray3.40Z3-189[»]
    4KFLX-ray3.40Z3-189[»]
    4L6JX-ray3.40V3-189[»]
    4L6LX-ray3.40V3-189[»]
    ProteinModelPortaliQ72IA7.
    SMRiQ72IA7. Positions 1-185.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72IA7.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1825.
    KOiK02897.
    OMAiCIGVKLG.
    OrthoDBiEOG6SZ1PC.

    Family and domain databases

    Gene3Di2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPiMF_01334. Ribosomal_L25_CTC.
    InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    [Graphical view]
    PfamiPF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50715. SSF50715. 1 hit.
    TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q72IA7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEYRLKAYYR EGEKPSALRR AGKLPGVMYN RHLNRKVYVD LVEFDKVFRQ    50
    ASIHHVIVLE LPDGQSLPTL VRQVNLDKRR RRPEHVDFFV LSDEPVEMYV 100
    PLRFVGTPAG VRAGGVLQEI HRDILVKVSP RNIPEFIEVD VSGLEIGDSL 150
    HASDLKLPPG VELAVSPEET IAAVVPPEDV EKLAEEAAAE VAEPEVIKKG 200
    KEEEEE 206
    Length:206
    Mass (Da):23,205
    Last modified:July 5, 2004 - v1
    Checksum:iACC20EC1279181CD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81567.1.
    RefSeqiYP_005194.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81567; AAS81567; TT_C1225.
    GeneIDi2774548.
    KEGGitth:TTC1225.
    PATRICi23952857. VBITheThe54392_1217.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81567.1 .
    RefSeqi YP_005194.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 T 1-206 [» ]
    1VSP X-ray 3.83 T 1-206 [» ]
    3D5B X-ray 3.21 Z 1-206 [» ]
    3D5D X-ray 3.21 Z 1-206 [» ]
    3F1F X-ray 3.00 Z 1-206 [» ]
    3F1H X-ray 3.00 Z 1-206 [» ]
    3MRZ X-ray 3.62 V 1-206 [» ]
    3MS1 X-ray 3.62 V 1-206 [» ]
    3PYO X-ray 3.50 V 3-190 [» ]
    3PYR X-ray 3.50 V 3-190 [» ]
    3PYT X-ray 3.40 V 3-190 [» ]
    3PYV X-ray 3.40 V 3-190 [» ]
    4KBU X-ray 3.86 Z 3-187 [» ]
    4KBW X-ray 3.86 Z 3-187 [» ]
    4KCZ X-ray 3.50 Z 3-187 [» ]
    4KD2 X-ray 3.50 Z 3-187 [» ]
    4KD9 X-ray 3.50 Z 3-187 [» ]
    4KDB X-ray 3.50 Z 3-187 [» ]
    4KDH X-ray 4.00 Z 3-187 [» ]
    4KDK X-ray 4.00 Z 3-187 [» ]
    4KFI X-ray 3.40 Z 3-189 [» ]
    4KFL X-ray 3.40 Z 3-189 [» ]
    4L6J X-ray 3.40 V 3-189 [» ]
    4L6L X-ray 3.40 V 3-189 [» ]
    ProteinModelPortali Q72IA7.
    SMRi Q72IA7. Positions 1-185.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81567 ; AAS81567 ; TT_C1225 .
    GeneIDi 2774548.
    KEGGi tth:TTC1225.
    PATRICi 23952857. VBITheThe54392_1217.

    Phylogenomic databases

    eggNOGi COG1825.
    KOi K02897.
    OMAi CIGVKLG.
    OrthoDBi EOG6SZ1PC.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1240-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72IA7.

    Family and domain databases

    Gene3Di 2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPi MF_01334. Ribosomal_L25_CTC.
    InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    [Graphical view ]
    Pfami PF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50715. SSF50715. 1 hit.
    TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL25_THET2
    AccessioniPrimary (citable) accession number: Q72IA7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2005
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 73 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3