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Protein

50S ribosomal protein L17

Gene

rplQ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1314-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L17UniRule annotation
Gene namesi
Name:rplQUniRule annotation
Ordered Locus Names:TT_C1299
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11811850S ribosomal protein L17PRO_0000267959Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L32.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1299.

Structurei

Secondary structure

1
118
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi14 – 3118Combined sources
Beta strandi32 – 376Combined sources
Helixi38 – 5518Combined sources
Helixi60 – 667Combined sources
Turni67 – 693Combined sources
Helixi73 – 8210Combined sources
Turni83 – 864Combined sources
Beta strandi87 – 904Combined sources
Beta strandi96 – 1027Combined sources
Turni105 – 1073Combined sources
Beta strandi111 – 1155Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71L1-118[»]
4V4JX-ray3.83L1-118[»]
4V63X-ray3.21BR/DR1-118[»]
4V67X-ray3.00BR/DR1-118[»]
4V7PX-ray3.62BN/CN2-118[»]
4V83X-ray3.50BN/DN2-118[»]
4V84X-ray3.40BN/DN2-118[»]
4V9JX-ray3.86BR/DR2-118[»]
4V9KX-ray3.50BR/DR2-118[»]
4V9LX-ray3.50BR/DR2-118[»]
4V9MX-ray4.00BR/DR2-118[»]
4V9NX-ray3.40BR/DR2-118[»]
4V9QX-ray3.40AN/CN2-118[»]
4W29X-ray3.80BR/DR2-118[»]
4WWTX-ray3.40Q2-118[»]
4XEJX-ray3.80AL17/BL172-118[»]
ProteinModelPortaliQ72I33.
SMRiQ72I33. Positions 1-118.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I33.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L17P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0203.
KOiK02879.
OMAiKTVQRRG.
OrthoDBiEOG6GR3GR.

Family and domain databases

Gene3Di3.90.1030.10. 1 hit.
HAMAPiMF_01368. Ribosomal_L17.
InterProiIPR000456. Ribosomal_L17.
[Graphical view]
PANTHERiPTHR14413. PTHR14413. 1 hit.
PfamiPF01196. Ribosomal_L17. 1 hit.
[Graphical view]
SUPFAMiSSF64263. SSF64263. 1 hit.
TIGRFAMsiTIGR00059. L17. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I33-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRHLKSGRKL NRHSSHRLAL YRNQAKSLLT HGRITTTVPK AKELRGFVDH
60 70 80 90 100
LIHLAKRGDL HARRLVLRDL QDVKLVRKLF DEIAPRYRDR QGGYTRVLKL
110
AERRRGDGAP LALVELVE
Length:118
Mass (Da):13,715
Last modified:July 5, 2004 - v1
Checksum:iC9B8DD552F6C42AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81641.1.
RefSeqiWP_008633358.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81641; AAS81641; TT_C1299.
KEGGitth:TTC1299.
PATRICi23953005. VBITheThe54392_1291.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81641.1.
RefSeqiWP_008633358.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71L1-118[»]
4V4JX-ray3.83L1-118[»]
4V63X-ray3.21BR/DR1-118[»]
4V67X-ray3.00BR/DR1-118[»]
4V7PX-ray3.62BN/CN2-118[»]
4V83X-ray3.50BN/DN2-118[»]
4V84X-ray3.40BN/DN2-118[»]
4V9JX-ray3.86BR/DR2-118[»]
4V9KX-ray3.50BR/DR2-118[»]
4V9LX-ray3.50BR/DR2-118[»]
4V9MX-ray4.00BR/DR2-118[»]
4V9NX-ray3.40BR/DR2-118[»]
4V9QX-ray3.40AN/CN2-118[»]
4W29X-ray3.80BR/DR2-118[»]
4WWTX-ray3.40Q2-118[»]
4XEJX-ray3.80AL17/BL172-118[»]
ProteinModelPortaliQ72I33.
SMRiQ72I33. Positions 1-118.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1299.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81641; AAS81641; TT_C1299.
KEGGitth:TTC1299.
PATRICi23953005. VBITheThe54392_1291.

Phylogenomic databases

eggNOGiCOG0203.
KOiK02879.
OMAiKTVQRRG.
OrthoDBiEOG6GR3GR.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1314-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I33.

Family and domain databases

Gene3Di3.90.1030.10. 1 hit.
HAMAPiMF_01368. Ribosomal_L17.
InterProiIPR000456. Ribosomal_L17.
[Graphical view]
PANTHERiPTHR14413. PTHR14413. 1 hit.
PfamiPF01196. Ribosomal_L17. 1 hit.
[Graphical view]
SUPFAMiSSF64263. SSF64263. 1 hit.
TIGRFAMsiTIGR00059. L17. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL17_THET2
AccessioniPrimary (citable) accession number: Q72I33
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: July 5, 2004
Last modified: July 22, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.