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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1319-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36UniRule annotation
Gene namesi
Name:rpmJUniRule annotation
Ordered Locus Names:TT_C1304
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 373750S ribosomal protein L36PRO_0000126283Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1304.

Structurei

Secondary structure

1
37
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 64Combined sources
Beta strandi11 – 133Combined sources
Beta strandi16 – 194Combined sources
Beta strandi22 – 254Combined sources
Helixi30 – 323Combined sources
Beta strandi34 – 363Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71b1-37[»]
4V4JX-ray3.83b1-37[»]
4V9JX-ray3.86B9/D91-37[»]
4V9KX-ray3.50B9/D91-37[»]
4V9LX-ray3.50B9/D91-37[»]
4V9MX-ray4.00B9/D91-37[»]
4W29X-ray3.80B9/D91-37[»]
5J4DX-ray3.10GA/LC1-37[»]
ProteinModelPortaliQ72I28.
SMRiQ72I28. Positions 1-37.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I28.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L36P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
KOiK02919.
OrthoDBiEOG676ZC2.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I28-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG
Length:37
Mass (Da):4,421
Last modified:July 5, 2004 - v1
Checksum:i439072E1737E2AE8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81646.1.
RefSeqiWP_008633370.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81646; AAS81646; TT_C1304.
KEGGitth:TTC1304.
PATRICi23953015. VBITheThe54392_1296.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81646.1.
RefSeqiWP_008633370.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71b1-37[»]
4V4JX-ray3.83b1-37[»]
4V9JX-ray3.86B9/D91-37[»]
4V9KX-ray3.50B9/D91-37[»]
4V9LX-ray3.50B9/D91-37[»]
4V9MX-ray4.00B9/D91-37[»]
4W29X-ray3.80B9/D91-37[»]
5J4DX-ray3.10GA/LC1-37[»]
ProteinModelPortaliQ72I28.
SMRiQ72I28. Positions 1-37.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1304.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81646; AAS81646; TT_C1304.
KEGGitth:TTC1304.
PATRICi23953015. VBITheThe54392_1296.

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
KOiK02919.
OrthoDBiEOG676ZC2.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1319-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I28.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL36_THET2
AccessioniPrimary (citable) accession number: Q72I28
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 15, 2005
Last sequence update: July 5, 2004
Last modified: July 6, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.