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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36UniRule annotation
Gene namesi
Name:rpmJUniRule annotation
Ordered Locus Names:TT_C1304
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001262831 – 3750S ribosomal protein L36Add BLAST37

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1304.

Structurei

Secondary structure

137
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 6Combined sources4
Beta strandi11 – 13Combined sources3
Beta strandi16 – 19Combined sources4
Beta strandi22 – 25Combined sources4
Helixi30 – 32Combined sources3
Beta strandi34 – 36Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71b1-37[»]
4V4JX-ray3.83b1-37[»]
4V9JX-ray3.86B9/D91-37[»]
4V9KX-ray3.50B9/D91-37[»]
4V9LX-ray3.50B9/D91-37[»]
4V9MX-ray4.00B9/D91-37[»]
4W29X-ray3.80B9/D91-37[»]
5J4DX-ray3.10GA/LC1-37[»]
ProteinModelPortaliQ72I28.
SMRiQ72I28.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I28.

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL36 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
KOiK02919.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiView protein in InterPro
IPR000473. Ribosomal_L36.
PfamiView protein in Pfam
PF00444. Ribosomal_L36. 1 hit.
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00828. RIBOSOMAL_L36. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I28-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG
Length:37
Mass (Da):4,421
Last modified:July 5, 2004 - v1
Checksum:i439072E1737E2AE8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81646.1.
RefSeqiWP_008633370.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81646; AAS81646; TT_C1304.
KEGGitth:TT_C1304.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL36_THET2
AccessioniPrimary (citable) accession number: Q72I28
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 15, 2005
Last sequence update: July 5, 2004
Last modified: June 7, 2017
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families