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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1319-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36UniRule annotation
Gene namesi
Name:rpmJUniRule annotation
Ordered Locus Names:TT_C1304
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 373750S ribosomal protein L36PRO_0000126283Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1304.

Structurei

Secondary structure

1
37
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 64Combined sources
Beta strandi11 – 133Combined sources
Beta strandi16 – 194Combined sources
Beta strandi22 – 254Combined sources
Helixi30 – 323Combined sources
Beta strandi34 – 363Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71b1-37[»]
4V4JX-ray3.83b1-37[»]
4V9JX-ray3.86B9/D91-37[»]
4V9KX-ray3.50B9/D91-37[»]
4V9LX-ray3.50B9/D91-37[»]
4V9MX-ray4.00B9/D91-37[»]
4W29X-ray3.80B9/D91-37[»]
ProteinModelPortaliQ72I28.
SMRiQ72I28. Positions 1-37.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I28.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L36P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0257.
KOiK02919.
OrthoDBiEOG676ZC2.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I28-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG
Length:37
Mass (Da):4,421
Last modified:July 5, 2004 - v1
Checksum:i439072E1737E2AE8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81646.1.
RefSeqiWP_008633370.1. NC_005835.1.
YP_005273.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81646; AAS81646; TT_C1304.
KEGGitth:TTC1304.
PATRICi23953015. VBITheThe54392_1296.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81646.1.
RefSeqiWP_008633370.1. NC_005835.1.
YP_005273.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71b1-37[»]
4V4JX-ray3.83b1-37[»]
4V9JX-ray3.86B9/D91-37[»]
4V9KX-ray3.50B9/D91-37[»]
4V9LX-ray3.50B9/D91-37[»]
4V9MX-ray4.00B9/D91-37[»]
4W29X-ray3.80B9/D91-37[»]
ProteinModelPortaliQ72I28.
SMRiQ72I28. Positions 1-37.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1304.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81646; AAS81646; TT_C1304.
KEGGitth:TTC1304.
PATRICi23953015. VBITheThe54392_1296.

Phylogenomic databases

eggNOGiCOG0257.
KOiK02919.
OrthoDBiEOG676ZC2.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1319-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I28.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL36_THET2
AccessioniPrimary (citable) accession number: Q72I28
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 15, 2005
Last sequence update: July 5, 2004
Last modified: June 24, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.