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Protein

50S ribosomal protein L15

Gene

rplO

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1324-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L15UniRule annotation
Gene namesi
Name:rplOUniRule annotation
Ordered Locus Names:TT_C1309
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 15015050S ribosomal protein L15PRO_0000104845Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Structurei

Secondary structure

1
150
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 93Combined sources
Beta strandi24 – 296Combined sources
Turni31 – 333Combined sources
Beta strandi37 – 404Combined sources
Beta strandi49 – 513Combined sources
Beta strandi53 – 553Combined sources
Turni57 – 604Combined sources
Beta strandi80 – 845Combined sources
Helixi85 – 895Combined sources
Beta strandi93 – 953Combined sources
Helixi97 – 1015Combined sources
Turni102 – 1043Combined sources
Beta strandi111 – 1188Combined sources
Beta strandi122 – 1254Combined sources
Beta strandi128 – 1303Combined sources
Helixi132 – 1398Combined sources
Beta strandi141 – 1433Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71J1-150[»]
4V4JX-ray3.83J1-150[»]
4V63X-ray3.21BP/DP1-150[»]
4V67X-ray3.00BP/DP1-150[»]
4V7PX-ray3.62BL/CL1-150[»]
4V83X-ray3.50BL/DL5-150[»]
4V84X-ray3.40BL/DL5-150[»]
4V9JX-ray3.86BP/DP5-150[»]
4V9KX-ray3.50BP/DP5-150[»]
4V9LX-ray3.50BP/DP5-150[»]
4V9MX-ray4.00BP/DP5-150[»]
4V9NX-ray3.40BP/DP5-150[»]
4V9QX-ray3.40AL/CL5-150[»]
4W29X-ray3.80BP/DP5-150[»]
4XEJX-ray3.80AL15/BL155-150[»]
ProteinModelPortaliQ72I23.
SMRiQ72I23. Positions 5-150.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I23.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L15P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0200.
KOiK02876.
OMAiTNPFRTE.
OrthoDBiEOG6CGCM5.

Family and domain databases

HAMAPiMF_01341. Ribosomal_L15.
InterProiIPR030878. Ribosomal_L15.
IPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR12934. PTHR12934. 1 hit.
PfamiPF00828. Ribosomal_L18e. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
TIGRFAMsiTIGR01071. rplO_bact. 1 hit.
PROSITEiPS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I23-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLSDLRPNP GANKRRKRVG RGPGSGHGKT ATRGHKGQKS RSGGLKDPRR
60 70 80 90 100
FEGGRSTTLM RLPKRGMQGQ VPGEIKRPRY QGVNLKDLAR FEGEVTPELL
110 120 130 140 150
VRAGLLKKGY RLKILGEGEA KPLKVVAHAF SKSALEKLKA AGGEPVLLEA
Length:150
Mass (Da):16,281
Last modified:July 5, 2004 - v1
Checksum:i0175AF33F530AD4F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81651.1.
RefSeqiYP_005278.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81651; AAS81651; TT_C1309.
KEGGitth:TTC1309.
PATRICi23953025. VBITheThe54392_1301.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81651.1.
RefSeqiYP_005278.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71J1-150[»]
4V4JX-ray3.83J1-150[»]
4V63X-ray3.21BP/DP1-150[»]
4V67X-ray3.00BP/DP1-150[»]
4V7PX-ray3.62BL/CL1-150[»]
4V83X-ray3.50BL/DL5-150[»]
4V84X-ray3.40BL/DL5-150[»]
4V9JX-ray3.86BP/DP5-150[»]
4V9KX-ray3.50BP/DP5-150[»]
4V9LX-ray3.50BP/DP5-150[»]
4V9MX-ray4.00BP/DP5-150[»]
4V9NX-ray3.40BP/DP5-150[»]
4V9QX-ray3.40AL/CL5-150[»]
4W29X-ray3.80BP/DP5-150[»]
4XEJX-ray3.80AL15/BL155-150[»]
ProteinModelPortaliQ72I23.
SMRiQ72I23. Positions 5-150.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81651; AAS81651; TT_C1309.
KEGGitth:TTC1309.
PATRICi23953025. VBITheThe54392_1301.

Phylogenomic databases

eggNOGiCOG0200.
KOiK02876.
OMAiTNPFRTE.
OrthoDBiEOG6CGCM5.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1324-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I23.

Family and domain databases

HAMAPiMF_01341. Ribosomal_L15.
InterProiIPR030878. Ribosomal_L15.
IPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR12934. PTHR12934. 1 hit.
PfamiPF00828. Ribosomal_L18e. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
TIGRFAMsiTIGR01071. rplO_bact. 1 hit.
PROSITEiPS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL15_THET2
AccessioniPrimary (citable) accession number: Q72I23
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: July 5, 2004
Last modified: April 29, 2015
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.