50S ribosomal protein L15 - Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)

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Q72I23 (RL15_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 63. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L15

Gene names

Name:	rplO
Ordered Locus Names:	TT_C1309

Organism

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	150 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Binds to the 23S rRNA By similarity.
Subunit structure	Part of the 50S ribosomal subunit.
Sequence similarities	Belongs to the ribosomal protein L15P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	large ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

150

50S ribosomal protein L15 HAMAP-Rule MF_01341

PRO_0000104845

Secondary structure

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150

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

Q72I23 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 0175AF33F530AD4F
Show »

150

16,281

        10         20         30         40         50         60 
MKLSDLRPNP GANKRRKRVG RGPGSGHGKT ATRGHKGQKS RSGGLKDPRR FEGGRSTTLM 

        70         80         90        100        110        120 
RLPKRGMQGQ VPGEIKRPRY QGVNLKDLAR FEGEVTPELL VRAGLLKKGY RLKILGEGEA 

       130        140        150 
KPLKVVAHAF SKSALEKLKA AGGEPVLLEA

References

[1]

"The genome sequence of the extreme thermophile Thermus thermophilus."
Henne A., Brueggemann H., Raasch C., Wiezer A., Hartsch T., Liesegang H., Johann A., Lienard T., Gohl O., Martinez-Arias R., Jacobi C., Starkuviene V., Schlenczeck S., Dencker S., Huber R., Klenk H.-P., Kramer W., Merkl R., Gottschalk G., Fritz H.-J.
Nat. Biotechnol. 22:547-553(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB27 / ATCC BAA-163 / DSM 7039.

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Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE017221 Genomic DNA. Translation: AAS81651.1.

RefSeq

YP_005278.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1VSA	X-ray	3.71	J	1-150	[»]
1VSP	X-ray	3.83	J	1-150	[»]
3D5B	X-ray	3.21	P	1-150	[»]
3D5D	X-ray	3.21	P	1-150	[»]
3F1F	X-ray	3.00	P	1-150	[»]
3F1H	X-ray	3.00	P	1-150	[»]
3MRZ	X-ray	3.62	L	1-150	[»]
3MS1	X-ray	3.62	L	1-150	[»]
3PYO	X-ray	3.50	L	5-150	[»]
3PYR	X-ray	3.50	L	5-150	[»]
3PYT	X-ray	3.40	L	5-150	[»]
3PYV	X-ray	3.40	L	5-150	[»]

ProteinModelPortal

SMR

Q72I23. Positions 5-150.

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AAS81651; AAS81651; TT_C1309.

GeneID

KEGG

PATRIC

23953025. VBITheThe54392_1301.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

KO

OMA

ProtClustDB

Family and domain databases

HAMAP

MF_01341_B. Ribosomal_L15_B.

InterPro

IPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]

PANTHER

PTHR12934. PTHR12934. 1 hit.

Pfam

PF00828. Ribosomal_L18e. 1 hit.
[Graphical view]

SUPFAM

SSF52080. Ribosomal_L18e/L15. 1 hit.

TIGRFAMs

TIGR01071. rplO_bact. 1 hit.

PROSITE

PS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

RL15_THET2

Accession

Primary (citable) accession number: Q72I23

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 6, 2005
Last sequence update:	July 5, 2004
Last modified:	May 1, 2013
This is version 63 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents