50S ribosomal protein L30 - Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)

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Q72I22 (RL30_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 63. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L30

Gene names

Name:	rpmD
Ordered Locus Names:	TT_C1310

Organism

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	60 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L30P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	large ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

60

50S ribosomal protein L30 HAMAP-Rule MF_01371

PRO_1000056126

Secondary structure

1

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60

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

Q72I22 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: CDC6675F81A8D327
Show »

60

6,785

        10         20         30         40         50         60 
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV AHLVRVEVVE

References

[1]

"The genome sequence of the extreme thermophile Thermus thermophilus."
Henne A., Brueggemann H., Raasch C., Wiezer A., Hartsch T., Liesegang H., Johann A., Lienard T., Gohl O., Martinez-Arias R., Jacobi C., Starkuviene V., Schlenczeck S., Dencker S., Huber R., Klenk H.-P., Kramer W., Merkl R., Gottschalk G., Fritz H.-J.
Nat. Biotechnol. 22:547-553(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB27 / ATCC BAA-163 / DSM 7039.

+

Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE017221 Genomic DNA. Translation: AAS81652.1.

RefSeq

YP_005279.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1VSA	X-ray	3.71	X	1-60	[»]
1VSP	X-ray	3.83	X	1-60	[»]
3D5B	X-ray	3.21	3	1-60	[»]
3D5D	X-ray	3.21	3	1-60	[»]
3F1F	X-ray	3.00	3	1-60	[»]
3F1H	X-ray	3.00	3	1-60	[»]
3MRZ	X-ray	3.62	Z	1-59	[»]
3MS1	X-ray	3.62	Z	1-59	[»]
3PYO	X-ray	3.50	Z	1-59	[»]
3PYR	X-ray	3.50	Z	1-59	[»]
3PYT	X-ray	3.40	Z	1-59	[»]
3PYV	X-ray	3.40	Z	1-59	[»]

ProteinModelPortal

SMR

Q72I22. Positions 1-60.

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AAS81652; AAS81652; TT_C1310.

GeneID

KEGG

PATRIC

23953027. VBITheThe54392_1302.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

KO

OMA

ProtClustDB

Family and domain databases

Gene3D

3.30.1390.20. 1 hit.

HAMAP

MF_01371_B. Ribosomal_L30_B.

InterPro

IPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]

Pfam

PF00327. Ribosomal_L30. 1 hit.
[Graphical view]

PIRSF

PIRSF002211. Ribosomal_L30_bac-type. 1 hit.

SUPFAM

SSF55129. Ribosomal_L30. 1 hit.

TIGRFAMs

TIGR01308. rpmD_bact. 1 hit.

PROSITE

PS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

RL30_THET2

Accession

Primary (citable) accession number: Q72I22

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	July 5, 2004
Last modified:	May 1, 2013
This is version 63 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents