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Q72I22

- RL30_THET2

UniProt

Q72I22 - RL30_THET2

Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1325-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L30UniRule annotation
    Gene namesi
    Name:rpmDUniRule annotation
    Ordered Locus Names:TT_C1310
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. large ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 606050S ribosomal protein L30PRO_1000056126Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Structurei

    Secondary structure

    1
    60
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi3 – 86
    Helixi17 – 259
    Beta strandi30 – 323
    Beta strandi36 – 383
    Helixi41 – 499
    Helixi50 – 534
    Beta strandi54 – 596

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71X1-60[»]
    1VSPX-ray3.83X1-60[»]
    3D5BX-ray3.2131-60[»]
    3D5DX-ray3.2131-60[»]
    3F1FX-ray3.0031-60[»]
    3F1HX-ray3.0031-60[»]
    3MRZX-ray3.62Z1-59[»]
    3MS1X-ray3.62Z1-59[»]
    3PYOX-ray3.50Z1-59[»]
    3PYRX-ray3.50Z1-59[»]
    3PYTX-ray3.40Z1-59[»]
    3PYVX-ray3.40Z1-59[»]
    4KBUX-ray3.8631-60[»]
    4KBWX-ray3.8631-60[»]
    4KCZX-ray3.5031-60[»]
    4KD2X-ray3.5031-60[»]
    4KD9X-ray3.5031-60[»]
    4KDBX-ray3.5031-60[»]
    4KDHX-ray4.0031-60[»]
    4KDKX-ray4.0031-60[»]
    4KFIX-ray3.4031-59[»]
    4KFLX-ray3.4031-59[»]
    4L6JX-ray3.40Z1-59[»]
    4L6LX-ray3.40Z1-59[»]
    ProteinModelPortaliQ72I22.
    SMRiQ72I22. Positions 1-60.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72I22.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L30P family.UniRule annotation

    Phylogenomic databases

    eggNOGiNOG74699.
    KOiK02907.
    OMAiSDMLDTI.
    OrthoDBiEOG6BGP7P.

    Family and domain databases

    Gene3Di3.30.1390.20. 1 hit.
    HAMAPiMF_01371_B. Ribosomal_L30_B.
    InterProiIPR005996. Ribosomal_L30_bac-type.
    IPR018038. Ribosomal_L30_CS.
    IPR016082. Ribosomal_L30_ferredoxin-like.
    [Graphical view]
    PfamiPF00327. Ribosomal_L30. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
    SUPFAMiSSF55129. SSF55129. 1 hit.
    TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
    PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q72I22-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV   50
    AHLVRVEVVE 60
    Length:60
    Mass (Da):6,785
    Last modified:July 5, 2004 - v1
    Checksum:iCDC6675F81A8D327
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81652.1.
    RefSeqiYP_005279.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81652; AAS81652; TT_C1310.
    GeneIDi2774961.
    KEGGitth:TTC1310.
    PATRICi23953027. VBITheThe54392_1302.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81652.1 .
    RefSeqi YP_005279.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 X 1-60 [» ]
    1VSP X-ray 3.83 X 1-60 [» ]
    3D5B X-ray 3.21 3 1-60 [» ]
    3D5D X-ray 3.21 3 1-60 [» ]
    3F1F X-ray 3.00 3 1-60 [» ]
    3F1H X-ray 3.00 3 1-60 [» ]
    3MRZ X-ray 3.62 Z 1-59 [» ]
    3MS1 X-ray 3.62 Z 1-59 [» ]
    3PYO X-ray 3.50 Z 1-59 [» ]
    3PYR X-ray 3.50 Z 1-59 [» ]
    3PYT X-ray 3.40 Z 1-59 [» ]
    3PYV X-ray 3.40 Z 1-59 [» ]
    4KBU X-ray 3.86 3 1-60 [» ]
    4KBW X-ray 3.86 3 1-60 [» ]
    4KCZ X-ray 3.50 3 1-60 [» ]
    4KD2 X-ray 3.50 3 1-60 [» ]
    4KD9 X-ray 3.50 3 1-60 [» ]
    4KDB X-ray 3.50 3 1-60 [» ]
    4KDH X-ray 4.00 3 1-60 [» ]
    4KDK X-ray 4.00 3 1-60 [» ]
    4KFI X-ray 3.40 3 1-59 [» ]
    4KFL X-ray 3.40 3 1-59 [» ]
    4L6J X-ray 3.40 Z 1-59 [» ]
    4L6L X-ray 3.40 Z 1-59 [» ]
    ProteinModelPortali Q72I22.
    SMRi Q72I22. Positions 1-60.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81652 ; AAS81652 ; TT_C1310 .
    GeneIDi 2774961.
    KEGGi tth:TTC1310.
    PATRICi 23953027. VBITheThe54392_1302.

    Phylogenomic databases

    eggNOGi NOG74699.
    KOi K02907.
    OMAi SDMLDTI.
    OrthoDBi EOG6BGP7P.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1325-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72I22.

    Family and domain databases

    Gene3Di 3.30.1390.20. 1 hit.
    HAMAPi MF_01371_B. Ribosomal_L30_B.
    InterProi IPR005996. Ribosomal_L30_bac-type.
    IPR018038. Ribosomal_L30_CS.
    IPR016082. Ribosomal_L30_ferredoxin-like.
    [Graphical view ]
    Pfami PF00327. Ribosomal_L30. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002211. Ribosomal_L30_bac-type. 1 hit.
    SUPFAMi SSF55129. SSF55129. 1 hit.
    TIGRFAMsi TIGR01308. rpmD_bact. 1 hit.
    PROSITEi PS00634. RIBOSOMAL_L30. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL30_THET2
    AccessioniPrimary (citable) accession number: Q72I22
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3