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Q72I22

- RL30_THET2

UniProt

Q72I22 - RL30_THET2

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Protein
50S ribosomal protein L30
Gene
rpmD, TT_C1310
Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1325-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30
Gene namesi
Name:rpmD
Ordered Locus Names:TT_C1310
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 606050S ribosomal protein L30UniRule annotation
PRO_1000056126Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit By similarity.UniRule annotation

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86
Helixi17 – 259
Beta strandi30 – 323
Beta strandi36 – 383
Helixi41 – 499
Helixi50 – 534
Beta strandi54 – 596

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71X1-60[»]
1VSPX-ray3.83X1-60[»]
3D5BX-ray3.2131-60[»]
3D5DX-ray3.2131-60[»]
3F1FX-ray3.0031-60[»]
3F1HX-ray3.0031-60[»]
3MRZX-ray3.62Z1-59[»]
3MS1X-ray3.62Z1-59[»]
3PYOX-ray3.50Z1-59[»]
3PYRX-ray3.50Z1-59[»]
3PYTX-ray3.40Z1-59[»]
3PYVX-ray3.40Z1-59[»]
4KBUX-ray3.8631-60[»]
4KBWX-ray3.8631-60[»]
4KCZX-ray3.5031-60[»]
4KD2X-ray3.5031-60[»]
4KD9X-ray3.5031-60[»]
4KDBX-ray3.5031-60[»]
4KDHX-ray4.0031-60[»]
4KDKX-ray4.0031-60[»]
4KFIX-ray3.4031-59[»]
4KFLX-ray3.4031-59[»]
4L6JX-ray3.40Z1-59[»]
4L6LX-ray3.40Z1-59[»]
ProteinModelPortaliQ72I22.
SMRiQ72I22. Positions 1-60.

Miscellaneous databases

EvolutionaryTraceiQ72I22.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG74699.
KOiK02907.
OMAiSDMLDTI.
OrthoDBiEOG6BGP7P.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I22-1 [UniParc]FASTAAdd to Basket

« Hide

MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV   50
AHLVRVEVVE 60
Length:60
Mass (Da):6,785
Last modified:July 5, 2004 - v1
Checksum:iCDC6675F81A8D327
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81652.1.
RefSeqiYP_005279.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81652; AAS81652; TT_C1310.
GeneIDi2774961.
KEGGitth:TTC1310.
PATRICi23953027. VBITheThe54392_1302.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81652.1 .
RefSeqi YP_005279.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 X 1-60 [» ]
1VSP X-ray 3.83 X 1-60 [» ]
3D5B X-ray 3.21 3 1-60 [» ]
3D5D X-ray 3.21 3 1-60 [» ]
3F1F X-ray 3.00 3 1-60 [» ]
3F1H X-ray 3.00 3 1-60 [» ]
3MRZ X-ray 3.62 Z 1-59 [» ]
3MS1 X-ray 3.62 Z 1-59 [» ]
3PYO X-ray 3.50 Z 1-59 [» ]
3PYR X-ray 3.50 Z 1-59 [» ]
3PYT X-ray 3.40 Z 1-59 [» ]
3PYV X-ray 3.40 Z 1-59 [» ]
4KBU X-ray 3.86 3 1-60 [» ]
4KBW X-ray 3.86 3 1-60 [» ]
4KCZ X-ray 3.50 3 1-60 [» ]
4KD2 X-ray 3.50 3 1-60 [» ]
4KD9 X-ray 3.50 3 1-60 [» ]
4KDB X-ray 3.50 3 1-60 [» ]
4KDH X-ray 4.00 3 1-60 [» ]
4KDK X-ray 4.00 3 1-60 [» ]
4KFI X-ray 3.40 3 1-59 [» ]
4KFL X-ray 3.40 3 1-59 [» ]
4L6J X-ray 3.40 Z 1-59 [» ]
4L6L X-ray 3.40 Z 1-59 [» ]
ProteinModelPortali Q72I22.
SMRi Q72I22. Positions 1-60.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81652 ; AAS81652 ; TT_C1310 .
GeneIDi 2774961.
KEGGi tth:TTC1310.
PATRICi 23953027. VBITheThe54392_1302.

Phylogenomic databases

eggNOGi NOG74699.
KOi K02907.
OMAi SDMLDTI.
OrthoDBi EOG6BGP7P.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1325-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72I22.

Family and domain databases

Gene3Di 3.30.1390.20. 1 hit.
HAMAPi MF_01371_B. Ribosomal_L30_B.
InterProi IPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view ]
Pfami PF00327. Ribosomal_L30. 1 hit.
[Graphical view ]
PIRSFi PIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMi SSF55129. SSF55129. 1 hit.
TIGRFAMsi TIGR01308. rpmD_bact. 1 hit.
PROSITEi PS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL30_THET2
AccessioniPrimary (citable) accession number: Q72I22
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 5, 2004
Last modified: May 14, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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