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Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1325-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:TT_C1310
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 606050S ribosomal protein L30PRO_1000056126Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1310.

Structurei

Secondary structure

1
60
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86Combined sources
Helixi17 – 259Combined sources
Beta strandi30 – 323Combined sources
Beta strandi36 – 383Combined sources
Helixi41 – 499Combined sources
Helixi50 – 534Combined sources
Beta strandi54 – 596Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71X1-60[»]
4V4JX-ray3.83X1-60[»]
4V63X-ray3.21B3/D31-60[»]
4V67X-ray3.00B3/D31-60[»]
4V7PX-ray3.62BZ/CZ1-59[»]
4V83X-ray3.50BZ/DZ1-59[»]
4V84X-ray3.40BZ/DZ1-59[»]
4V9JX-ray3.86B3/D31-60[»]
4V9KX-ray3.50B3/D31-60[»]
4V9LX-ray3.50B3/D31-60[»]
4V9MX-ray4.00B3/D31-60[»]
4V9NX-ray3.40B3/D31-59[»]
4V9QX-ray3.40AZ/CZ1-59[»]
4W29X-ray3.80B3/D31-60[»]
4XEJX-ray3.80AL30/BL301-59[»]
ProteinModelPortaliQ72I22.
SMRiQ72I22. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I22.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410856V. Bacteria.
COG1841. LUCA.
KOiK02907.
OMAiMVFKVKH.
OrthoDBiEOG6BGP7P.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I22-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV
60
AHLVRVEVVE
Length:60
Mass (Da):6,785
Last modified:July 5, 2004 - v1
Checksum:iCDC6675F81A8D327
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81652.1.
RefSeqiWP_008633387.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81652; AAS81652; TT_C1310.
KEGGitth:TTC1310.
PATRICi23953027. VBITheThe54392_1302.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81652.1.
RefSeqiWP_008633387.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71X1-60[»]
4V4JX-ray3.83X1-60[»]
4V63X-ray3.21B3/D31-60[»]
4V67X-ray3.00B3/D31-60[»]
4V7PX-ray3.62BZ/CZ1-59[»]
4V83X-ray3.50BZ/DZ1-59[»]
4V84X-ray3.40BZ/DZ1-59[»]
4V9JX-ray3.86B3/D31-60[»]
4V9KX-ray3.50B3/D31-60[»]
4V9LX-ray3.50B3/D31-60[»]
4V9MX-ray4.00B3/D31-60[»]
4V9NX-ray3.40B3/D31-59[»]
4V9QX-ray3.40AZ/CZ1-59[»]
4W29X-ray3.80B3/D31-60[»]
4XEJX-ray3.80AL30/BL301-59[»]
ProteinModelPortaliQ72I22.
SMRiQ72I22. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1310.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81652; AAS81652; TT_C1310.
KEGGitth:TTC1310.
PATRICi23953027. VBITheThe54392_1302.

Phylogenomic databases

eggNOGiENOG410856V. Bacteria.
COG1841. LUCA.
KOiK02907.
OMAiMVFKVKH.
OrthoDBiEOG6BGP7P.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1325-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I22.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL30_THET2
AccessioniPrimary (citable) accession number: Q72I22
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 5, 2004
Last modified: December 9, 2015
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.