Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1325-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:TT_C1310
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 606050S ribosomal protein L30PRO_1000056126Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Structurei

Secondary structure

1
60
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86Combined sources
Helixi17 – 259Combined sources
Beta strandi30 – 323Combined sources
Beta strandi36 – 383Combined sources
Helixi41 – 499Combined sources
Helixi50 – 534Combined sources
Beta strandi54 – 596Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71X1-60[»]
4V4JX-ray3.83X1-60[»]
4V63X-ray3.21B3/D31-60[»]
4V67X-ray3.00B3/D31-60[»]
4V7PX-ray3.62BZ/CZ1-59[»]
4V83X-ray3.50BZ/DZ1-59[»]
4V84X-ray3.40BZ/DZ1-59[»]
4V9JX-ray3.86B3/D31-60[»]
4V9KX-ray3.50B3/D31-60[»]
4V9LX-ray3.50B3/D31-60[»]
4V9MX-ray4.00B3/D31-60[»]
4V9NX-ray3.40B3/D31-59[»]
4V9QX-ray3.40AZ/CZ1-59[»]
4W29X-ray3.80B3/D31-60[»]
4XEJX-ray3.80AL30/BL301-59[»]
ProteinModelPortaliQ72I22.
SMRiQ72I22. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I22.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.UniRule annotation

Phylogenomic databases

eggNOGiNOG74699.
KOiK02907.
OMAiSDMLDTI.
OrthoDBiEOG6BGP7P.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I22-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV
60
AHLVRVEVVE
Length:60
Mass (Da):6,785
Last modified:July 5, 2004 - v1
Checksum:iCDC6675F81A8D327
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81652.1.
RefSeqiWP_008633387.1. NC_005835.1.
YP_005279.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81652; AAS81652; TT_C1310.
KEGGitth:TTC1310.
PATRICi23953027. VBITheThe54392_1302.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81652.1.
RefSeqiWP_008633387.1. NC_005835.1.
YP_005279.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71X1-60[»]
4V4JX-ray3.83X1-60[»]
4V63X-ray3.21B3/D31-60[»]
4V67X-ray3.00B3/D31-60[»]
4V7PX-ray3.62BZ/CZ1-59[»]
4V83X-ray3.50BZ/DZ1-59[»]
4V84X-ray3.40BZ/DZ1-59[»]
4V9JX-ray3.86B3/D31-60[»]
4V9KX-ray3.50B3/D31-60[»]
4V9LX-ray3.50B3/D31-60[»]
4V9MX-ray4.00B3/D31-60[»]
4V9NX-ray3.40B3/D31-59[»]
4V9QX-ray3.40AZ/CZ1-59[»]
4W29X-ray3.80B3/D31-60[»]
4XEJX-ray3.80AL30/BL301-59[»]
ProteinModelPortaliQ72I22.
SMRiQ72I22. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81652; AAS81652; TT_C1310.
KEGGitth:TTC1310.
PATRICi23953027. VBITheThe54392_1302.

Phylogenomic databases

eggNOGiNOG74699.
KOiK02907.
OMAiSDMLDTI.
OrthoDBiEOG6BGP7P.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1325-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I22.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL30_THET2
AccessioniPrimary (citable) accession number: Q72I22
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 5, 2004
Last modified: May 27, 2015
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.