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Q72I20

- RL18_THET2

UniProt

Q72I20 - RL18_THET2

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Protein

50S ribosomal protein L18

Gene
rplR, TT_C1312
Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1327-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L18
Gene namesi
Name:rplR
Ordered Locus Names:TT_C1312
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Chaini2 – 11211150S ribosomal protein L18UniRule annotationPRO_0000131371Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs By similarity.

Structurei

Secondary structure

1
112
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi13 – 197
Beta strandi21 – 233
Beta strandi25 – 273
Beta strandi38 – 414
Turni42 – 454
Beta strandi46 – 516
Turni54 – 563
Helixi63 – 7816
Beta strandi86 – 883
Helixi90 – 923
Beta strandi94 – 963
Helixi97 – 10711

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71M1-112[»]
1VSPX-ray3.83M1-112[»]
3D5BX-ray3.21S1-112[»]
3D5DX-ray3.21S1-112[»]
3F1FX-ray3.00S1-112[»]
3F1HX-ray3.00S1-112[»]
3MRZX-ray3.62O2-112[»]
3MS1X-ray3.62O2-112[»]
3PYOX-ray3.50O11-108[»]
3PYRX-ray3.50O11-108[»]
3PYTX-ray3.40O11-108[»]
3PYVX-ray3.40O11-108[»]
4KBUX-ray3.86S11-109[»]
4KBWX-ray3.86S11-109[»]
4KCZX-ray3.50S11-109[»]
4KD2X-ray3.50S11-109[»]
4KD9X-ray3.50S11-109[»]
4KDBX-ray3.50S11-109[»]
4KDHX-ray4.00S11-109[»]
4KDKX-ray4.00S11-109[»]
4KFIX-ray3.40S11-108[»]
4KFLX-ray3.40S11-108[»]
4L6JX-ray3.40O11-108[»]
4L6LX-ray3.40O11-108[»]
ProteinModelPortaliQ72I20.
SMRiQ72I20. Positions 3-112.

Miscellaneous databases

EvolutionaryTraceiQ72I20.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0256.
KOiK02881.
OMAiALWYSIT.
OrthoDBiEOG64NB48.

Family and domain databases

HAMAPiMF_01337_B. Ribosomal_L18_B.
InterProiIPR005484. Ribosomal_L18/L5.
IPR004389. Ribosomal_L18_bac-type.
[Graphical view]
PfamiPF00861. Ribosomal_L18p. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00060. L18_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q72I20-1 [UniParc]FASTAAdd to Basket

« Hide

MARLTAYERR KFRVRNRIKR TGRLRLSVFR SLKHIYAQII DDEKGVTLVS    50
ASSLALKLKG NKTEVARQVG RALAEKALAL GIKQVAFDRG PYKYHGRVKA 100
LAEGAREGGL EF 112
Length:112
Mass (Da):12,612
Last modified:January 23, 2007 - v3
Checksum:iEA2AB016AEDB0638
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81654.1.
RefSeqiYP_005281.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81654; AAS81654; TT_C1312.
GeneIDi2774941.
KEGGitth:TTC1312.
PATRICi23953031. VBITheThe54392_1304.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81654.1 .
RefSeqi YP_005281.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 M 1-112 [» ]
1VSP X-ray 3.83 M 1-112 [» ]
3D5B X-ray 3.21 S 1-112 [» ]
3D5D X-ray 3.21 S 1-112 [» ]
3F1F X-ray 3.00 S 1-112 [» ]
3F1H X-ray 3.00 S 1-112 [» ]
3MRZ X-ray 3.62 O 2-112 [» ]
3MS1 X-ray 3.62 O 2-112 [» ]
3PYO X-ray 3.50 O 11-108 [» ]
3PYR X-ray 3.50 O 11-108 [» ]
3PYT X-ray 3.40 O 11-108 [» ]
3PYV X-ray 3.40 O 11-108 [» ]
4KBU X-ray 3.86 S 11-109 [» ]
4KBW X-ray 3.86 S 11-109 [» ]
4KCZ X-ray 3.50 S 11-109 [» ]
4KD2 X-ray 3.50 S 11-109 [» ]
4KD9 X-ray 3.50 S 11-109 [» ]
4KDB X-ray 3.50 S 11-109 [» ]
4KDH X-ray 4.00 S 11-109 [» ]
4KDK X-ray 4.00 S 11-109 [» ]
4KFI X-ray 3.40 S 11-108 [» ]
4KFL X-ray 3.40 S 11-108 [» ]
4L6J X-ray 3.40 O 11-108 [» ]
4L6L X-ray 3.40 O 11-108 [» ]
ProteinModelPortali Q72I20.
SMRi Q72I20. Positions 3-112.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81654 ; AAS81654 ; TT_C1312 .
GeneIDi 2774941.
KEGGi tth:TTC1312.
PATRICi 23953031. VBITheThe54392_1304.

Phylogenomic databases

eggNOGi COG0256.
KOi K02881.
OMAi ALWYSIT.
OrthoDBi EOG64NB48.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1327-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72I20.

Family and domain databases

HAMAPi MF_01337_B. Ribosomal_L18_B.
InterProi IPR005484. Ribosomal_L18/L5.
IPR004389. Ribosomal_L18_bac-type.
[Graphical view ]
Pfami PF00861. Ribosomal_L18p. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00060. L18_bact. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL18_THET2
AccessioniPrimary (citable) accession number: Q72I20
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: January 23, 2007
Last modified: May 14, 2014
This is version 68 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3