Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q72I19 (RL6_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L6
Gene names
Name:rplF
Ordered Locus Names:TT_C1313
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus

Protein attributes

Sequence length180 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP MF_01365_B

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP MF_01365_B

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 18018050S ribosomal protein L6 HAMAP MF_01365_B
PRO_0000260969

Secondary structure

1 ..................... 180
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q72I19 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 1913833C0C30E95D

FASTA18019,532
        10         20         30         40         50         60 
MSRIGRLPIP VPKGVSVEVA PGRVKVKGPK GELEVPVSPE MRVVVEEGVV RVERPSDERR 

        70         80         90        100        110        120 
HKSLHGLTRT LIANAVKGVS EGYSKELLIK GIGYRARLVG RALELTVGFS HPVVVEPPEG 

       130        140        150        160        170        180 
ITFEVPEPTR VRVSGIDKQK VGQVAANIRA IRKPSAYHEK GIYYAGEPVR LKPGKAGAKK

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017221 Genomic DNA. Translation: AAS81655.1.
RefSeqYP_005282.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71F1-180[»]
1VSPX-ray3.83F1-180[»]
3D5BX-ray3.21H1-180[»]
3D5DX-ray3.21H1-180[»]
3F1FX-ray3.00H1-180[»]
3F1HX-ray3.00H1-180[»]
3MRZX-ray3.62G1-180[»]
3MS1X-ray3.62G1-180[»]
3PYOX-ray3.50G12-170[»]
3PYRX-ray3.50G12-170[»]
3PYTX-ray3.40G12-170[»]
3PYVX-ray3.40G12-170[»]
ProteinModelPortalQ72I19.
SMRQ72I19. Positions 4-177.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ72I19.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID2775054.
GenomeReviewsGene locus TT_C1313 in contig AE017221_GR.
PATRIC23953033. VBITheThe54392_1305.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0097.
HOGENOMHBG606796.
OMAALINNMV.
PhylomeDBQ72I19.
ProtClustDBPRK05498.

Enzyme and pathway databases

BioCycTTHE262724:TT_C1313-MONOMER.

Family and domain databases

HAMAPMF_01365_B. Ribosomal_L6_B.
[Tree]
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view]
Gene3DG3DSA:3.90.930.12. Ribosomal_L6. 2 hits.
PANTHERPTHR11655:SF6. PTHR11655:SF6. 1 hit.
PTHR11655. Ribosomal_L6. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSPR00059. RIBOSOMALL6.
SUPFAMSSF56053. Ribosomal_L6. 2 hits.
TIGRFAMsTIGR03654. L6_bact. 1 hit.
PROSITEPS00525. RIBOSOMAL_L6_1. False negative.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL6_THET2
AccessionPrimary (citable) accession number: Q72I19
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 5, 2004
Last modified: January 25, 2012
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents