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Q72I19

- RL6_THET2

UniProt

Q72I19 - RL6_THET2

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Protein
50S ribosomal protein L6
Gene
rplF, TT_C1313
Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1328-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6
Gene namesi
Name:rplF
Ordered Locus Names:TT_C1313
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 18018050S ribosomal protein L6UniRule annotation
PRO_0000260969Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit By similarity.UniRule annotation

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi16 – 194
Beta strandi21 – 233
Beta strandi25 – 273
Beta strandi32 – 343
Beta strandi39 – 413
Beta strandi42 – 443
Beta strandi47 – 504
Beta strandi51 – 533
Beta strandi55 – 573
Helixi59 – 8022
Beta strandi83 – 853
Beta strandi88 – 936
Beta strandi95 – 995
Beta strandi102 – 11110
Beta strandi113 – 1153
Beta strandi121 – 1277
Beta strandi130 – 1367
Helixi138 – 15114
Beta strandi156 – 1594
Beta strandi161 – 1633

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71F1-180[»]
1VSPX-ray3.83F1-180[»]
3D5BX-ray3.21H1-180[»]
3D5DX-ray3.21H1-180[»]
3F1FX-ray3.00H1-180[»]
3F1HX-ray3.00H1-180[»]
3MRZX-ray3.62G1-180[»]
3MS1X-ray3.62G1-180[»]
3PYOX-ray3.50G12-170[»]
3PYRX-ray3.50G12-170[»]
3PYTX-ray3.40G12-170[»]
3PYVX-ray3.40G12-170[»]
4KBUX-ray3.86H12-178[»]
4KBWX-ray3.86H12-178[»]
4KCZX-ray3.50H12-178[»]
4KD2X-ray3.50H12-178[»]
4KD9X-ray3.50H12-178[»]
4KDBX-ray3.50H12-178[»]
4KDHX-ray4.00H12-178[»]
4KDKX-ray4.00H12-178[»]
4KFIX-ray3.40H12-170[»]
4KFLX-ray3.40H12-170[»]
4L6JX-ray3.40H12-170[»]
4L6LX-ray3.40H12-170[»]
ProteinModelPortaliQ72I19.
SMRiQ72I19. Positions 4-177.

Miscellaneous databases

EvolutionaryTraceiQ72I19.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0097.
KOiK02933.
OMAiHINISTK.
OrthoDBiEOG67DPRD.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I19-1 [UniParc]FASTAAdd to Basket

« Hide

MSRIGRLPIP VPKGVSVEVA PGRVKVKGPK GELEVPVSPE MRVVVEEGVV    50
RVERPSDERR HKSLHGLTRT LIANAVKGVS EGYSKELLIK GIGYRARLVG 100
RALELTVGFS HPVVVEPPEG ITFEVPEPTR VRVSGIDKQK VGQVAANIRA 150
IRKPSAYHEK GIYYAGEPVR LKPGKAGAKK 180
Length:180
Mass (Da):19,532
Last modified:July 5, 2004 - v1
Checksum:i1913833C0C30E95D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81655.1.
RefSeqiYP_005282.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81655; AAS81655; TT_C1313.
GeneIDi2775054.
KEGGitth:TTC1313.
PATRICi23953033. VBITheThe54392_1305.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81655.1 .
RefSeqi YP_005282.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 F 1-180 [» ]
1VSP X-ray 3.83 F 1-180 [» ]
3D5B X-ray 3.21 H 1-180 [» ]
3D5D X-ray 3.21 H 1-180 [» ]
3F1F X-ray 3.00 H 1-180 [» ]
3F1H X-ray 3.00 H 1-180 [» ]
3MRZ X-ray 3.62 G 1-180 [» ]
3MS1 X-ray 3.62 G 1-180 [» ]
3PYO X-ray 3.50 G 12-170 [» ]
3PYR X-ray 3.50 G 12-170 [» ]
3PYT X-ray 3.40 G 12-170 [» ]
3PYV X-ray 3.40 G 12-170 [» ]
4KBU X-ray 3.86 H 12-178 [» ]
4KBW X-ray 3.86 H 12-178 [» ]
4KCZ X-ray 3.50 H 12-178 [» ]
4KD2 X-ray 3.50 H 12-178 [» ]
4KD9 X-ray 3.50 H 12-178 [» ]
4KDB X-ray 3.50 H 12-178 [» ]
4KDH X-ray 4.00 H 12-178 [» ]
4KDK X-ray 4.00 H 12-178 [» ]
4KFI X-ray 3.40 H 12-170 [» ]
4KFL X-ray 3.40 H 12-170 [» ]
4L6J X-ray 3.40 H 12-170 [» ]
4L6L X-ray 3.40 H 12-170 [» ]
ProteinModelPortali Q72I19.
SMRi Q72I19. Positions 4-177.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81655 ; AAS81655 ; TT_C1313 .
GeneIDi 2775054.
KEGGi tth:TTC1313.
PATRICi 23953033. VBITheThe54392_1305.

Phylogenomic databases

eggNOGi COG0097.
KOi K02933.
OMAi HINISTK.
OrthoDBi EOG67DPRD.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1328-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72I19.

Family and domain databases

Gene3Di 3.90.930.12. 2 hits.
HAMAPi MF_01365_B. Ribosomal_L6_B.
InterProi IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view ]
PANTHERi PTHR11655. PTHR11655. 1 hit.
Pfami PF00347. Ribosomal_L6. 2 hits.
[Graphical view ]
PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
PRINTSi PR00059. RIBOSOMALL6.
SUPFAMi SSF56053. SSF56053. 2 hits.
TIGRFAMsi TIGR03654. L6_bact. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL6_THET2
AccessioniPrimary (citable) accession number: Q72I19
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 5, 2004
Last modified: June 11, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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