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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1328-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
Ordered Locus Names:TT_C1313
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 18018050S ribosomal protein L6PRO_0000260969Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Structurei

Secondary structure

1
180
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi16 – 194Combined sources
Beta strandi21 – 233Combined sources
Beta strandi25 – 273Combined sources
Beta strandi32 – 343Combined sources
Beta strandi39 – 413Combined sources
Beta strandi42 – 443Combined sources
Beta strandi47 – 504Combined sources
Beta strandi51 – 533Combined sources
Beta strandi55 – 573Combined sources
Helixi59 – 8022Combined sources
Beta strandi83 – 853Combined sources
Beta strandi88 – 936Combined sources
Beta strandi95 – 995Combined sources
Beta strandi102 – 11110Combined sources
Beta strandi113 – 1153Combined sources
Beta strandi121 – 1277Combined sources
Beta strandi130 – 1367Combined sources
Helixi138 – 15114Combined sources
Beta strandi156 – 1594Combined sources
Beta strandi161 – 1633Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71F1-180[»]
4V4JX-ray3.83F1-180[»]
4V63X-ray3.21BH/DH1-180[»]
4V67X-ray3.00BH/DH1-180[»]
4V7PX-ray3.62BG/CG1-180[»]
4V83X-ray3.50BG/DG12-170[»]
4V84X-ray3.40BG/DG12-170[»]
4V9JX-ray3.86BH/DH12-178[»]
4V9KX-ray3.50BH/DH12-178[»]
4V9LX-ray3.50BH/DH12-178[»]
4V9MX-ray4.00BH/DH12-178[»]
4V9NX-ray3.40BH/DH12-170[»]
4V9QX-ray3.40AH/CH12-170[»]
4W29X-ray3.80BH/DH12-178[»]
4XEJX-ray3.80AL06/BL0612-170[»]
ProteinModelPortaliQ72I19.
SMRiQ72I19. Positions 4-177.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I19.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0097.
KOiK02933.
OMAiHGLCRTL.
OrthoDBiEOG67DPRD.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I19-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGRLPIP VPKGVSVEVA PGRVKVKGPK GELEVPVSPE MRVVVEEGVV
60 70 80 90 100
RVERPSDERR HKSLHGLTRT LIANAVKGVS EGYSKELLIK GIGYRARLVG
110 120 130 140 150
RALELTVGFS HPVVVEPPEG ITFEVPEPTR VRVSGIDKQK VGQVAANIRA
160 170 180
IRKPSAYHEK GIYYAGEPVR LKPGKAGAKK
Length:180
Mass (Da):19,532
Last modified:July 5, 2004 - v1
Checksum:i1913833C0C30E95D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81655.1.
RefSeqiWP_011173704.1. NC_005835.1.
YP_005282.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81655; AAS81655; TT_C1313.
KEGGitth:TTC1313.
PATRICi23953033. VBITheThe54392_1305.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81655.1.
RefSeqiWP_011173704.1. NC_005835.1.
YP_005282.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71F1-180[»]
4V4JX-ray3.83F1-180[»]
4V63X-ray3.21BH/DH1-180[»]
4V67X-ray3.00BH/DH1-180[»]
4V7PX-ray3.62BG/CG1-180[»]
4V83X-ray3.50BG/DG12-170[»]
4V84X-ray3.40BG/DG12-170[»]
4V9JX-ray3.86BH/DH12-178[»]
4V9KX-ray3.50BH/DH12-178[»]
4V9LX-ray3.50BH/DH12-178[»]
4V9MX-ray4.00BH/DH12-178[»]
4V9NX-ray3.40BH/DH12-170[»]
4V9QX-ray3.40AH/CH12-170[»]
4W29X-ray3.80BH/DH12-178[»]
4XEJX-ray3.80AL06/BL0612-170[»]
ProteinModelPortaliQ72I19.
SMRiQ72I19. Positions 4-177.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81655; AAS81655; TT_C1313.
KEGGitth:TTC1313.
PATRICi23953033. VBITheThe54392_1305.

Phylogenomic databases

eggNOGiCOG0097.
KOiK02933.
OMAiHGLCRTL.
OrthoDBiEOG67DPRD.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1328-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I19.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL6_THET2
AccessioniPrimary (citable) accession number: Q72I19
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 5, 2004
Last modified: May 27, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.