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Q72I19

- RL6_THET2

UniProt

Q72I19 - RL6_THET2

Protein

50S ribosomal protein L6

Gene

rplF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1328-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L6UniRule annotation
    Gene namesi
    Name:rplFUniRule annotation
    Ordered Locus Names:TT_C1313
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 18018050S ribosomal protein L6PRO_0000260969Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Structurei

    Secondary structure

    1
    180
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi16 – 194
    Beta strandi21 – 233
    Beta strandi25 – 273
    Beta strandi32 – 343
    Beta strandi39 – 413
    Beta strandi42 – 443
    Beta strandi47 – 504
    Beta strandi51 – 533
    Beta strandi55 – 573
    Helixi59 – 8022
    Beta strandi83 – 853
    Beta strandi88 – 936
    Beta strandi95 – 995
    Beta strandi102 – 11110
    Beta strandi113 – 1153
    Beta strandi121 – 1277
    Beta strandi130 – 1367
    Helixi138 – 15114
    Beta strandi156 – 1594
    Beta strandi161 – 1633

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71F1-180[»]
    1VSPX-ray3.83F1-180[»]
    3D5BX-ray3.21H1-180[»]
    3D5DX-ray3.21H1-180[»]
    3F1FX-ray3.00H1-180[»]
    3F1HX-ray3.00H1-180[»]
    3MRZX-ray3.62G1-180[»]
    3MS1X-ray3.62G1-180[»]
    3PYOX-ray3.50G12-170[»]
    3PYRX-ray3.50G12-170[»]
    3PYTX-ray3.40G12-170[»]
    3PYVX-ray3.40G12-170[»]
    4KBUX-ray3.86H12-178[»]
    4KBWX-ray3.86H12-178[»]
    4KCZX-ray3.50H12-178[»]
    4KD2X-ray3.50H12-178[»]
    4KD9X-ray3.50H12-178[»]
    4KDBX-ray3.50H12-178[»]
    4KDHX-ray4.00H12-178[»]
    4KDKX-ray4.00H12-178[»]
    4KFIX-ray3.40H12-170[»]
    4KFLX-ray3.40H12-170[»]
    4L6JX-ray3.40H12-170[»]
    4L6LX-ray3.40H12-170[»]
    ProteinModelPortaliQ72I19.
    SMRiQ72I19. Positions 4-177.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72I19.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L6P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0097.
    KOiK02933.
    OMAiHINISTK.
    OrthoDBiEOG67DPRD.

    Family and domain databases

    Gene3Di3.90.930.12. 2 hits.
    HAMAPiMF_01365_B. Ribosomal_L6_B.
    InterProiIPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR019906. Ribosomal_L6_bac-type.
    [Graphical view]
    PANTHERiPTHR11655. PTHR11655. 1 hit.
    PfamiPF00347. Ribosomal_L6. 2 hits.
    [Graphical view]
    PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
    PRINTSiPR00059. RIBOSOMALL6.
    SUPFAMiSSF56053. SSF56053. 2 hits.
    TIGRFAMsiTIGR03654. L6_bact. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q72I19-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSRIGRLPIP VPKGVSVEVA PGRVKVKGPK GELEVPVSPE MRVVVEEGVV    50
    RVERPSDERR HKSLHGLTRT LIANAVKGVS EGYSKELLIK GIGYRARLVG 100
    RALELTVGFS HPVVVEPPEG ITFEVPEPTR VRVSGIDKQK VGQVAANIRA 150
    IRKPSAYHEK GIYYAGEPVR LKPGKAGAKK 180
    Length:180
    Mass (Da):19,532
    Last modified:July 5, 2004 - v1
    Checksum:i1913833C0C30E95D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81655.1.
    RefSeqiYP_005282.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81655; AAS81655; TT_C1313.
    GeneIDi2775054.
    KEGGitth:TTC1313.
    PATRICi23953033. VBITheThe54392_1305.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81655.1 .
    RefSeqi YP_005282.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 F 1-180 [» ]
    1VSP X-ray 3.83 F 1-180 [» ]
    3D5B X-ray 3.21 H 1-180 [» ]
    3D5D X-ray 3.21 H 1-180 [» ]
    3F1F X-ray 3.00 H 1-180 [» ]
    3F1H X-ray 3.00 H 1-180 [» ]
    3MRZ X-ray 3.62 G 1-180 [» ]
    3MS1 X-ray 3.62 G 1-180 [» ]
    3PYO X-ray 3.50 G 12-170 [» ]
    3PYR X-ray 3.50 G 12-170 [» ]
    3PYT X-ray 3.40 G 12-170 [» ]
    3PYV X-ray 3.40 G 12-170 [» ]
    4KBU X-ray 3.86 H 12-178 [» ]
    4KBW X-ray 3.86 H 12-178 [» ]
    4KCZ X-ray 3.50 H 12-178 [» ]
    4KD2 X-ray 3.50 H 12-178 [» ]
    4KD9 X-ray 3.50 H 12-178 [» ]
    4KDB X-ray 3.50 H 12-178 [» ]
    4KDH X-ray 4.00 H 12-178 [» ]
    4KDK X-ray 4.00 H 12-178 [» ]
    4KFI X-ray 3.40 H 12-170 [» ]
    4KFL X-ray 3.40 H 12-170 [» ]
    4L6J X-ray 3.40 H 12-170 [» ]
    4L6L X-ray 3.40 H 12-170 [» ]
    ProteinModelPortali Q72I19.
    SMRi Q72I19. Positions 4-177.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81655 ; AAS81655 ; TT_C1313 .
    GeneIDi 2775054.
    KEGGi tth:TTC1313.
    PATRICi 23953033. VBITheThe54392_1305.

    Phylogenomic databases

    eggNOGi COG0097.
    KOi K02933.
    OMAi HINISTK.
    OrthoDBi EOG67DPRD.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1328-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72I19.

    Family and domain databases

    Gene3Di 3.90.930.12. 2 hits.
    HAMAPi MF_01365_B. Ribosomal_L6_B.
    InterProi IPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR019906. Ribosomal_L6_bac-type.
    [Graphical view ]
    PANTHERi PTHR11655. PTHR11655. 1 hit.
    Pfami PF00347. Ribosomal_L6. 2 hits.
    [Graphical view ]
    PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
    PRINTSi PR00059. RIBOSOMALL6.
    SUPFAMi SSF56053. SSF56053. 2 hits.
    TIGRFAMsi TIGR03654. L6_bact. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL6_THET2
    AccessioniPrimary (citable) accession number: Q72I19
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3