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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
Ordered Locus Names:TT_C1313
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002609691 – 18050S ribosomal protein L6Add BLAST180

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1313.

Structurei

Secondary structure

1180
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi16 – 19Combined sources4
Beta strandi21 – 23Combined sources3
Beta strandi25 – 27Combined sources3
Beta strandi32 – 34Combined sources3
Beta strandi39 – 41Combined sources3
Beta strandi42 – 44Combined sources3
Beta strandi47 – 50Combined sources4
Beta strandi51 – 53Combined sources3
Beta strandi55 – 57Combined sources3
Helixi59 – 80Combined sources22
Beta strandi83 – 85Combined sources3
Beta strandi88 – 93Combined sources6
Beta strandi95 – 99Combined sources5
Beta strandi102 – 111Combined sources10
Beta strandi113 – 115Combined sources3
Beta strandi121 – 127Combined sources7
Beta strandi130 – 136Combined sources7
Helixi138 – 151Combined sources14
Beta strandi156 – 159Combined sources4
Beta strandi161 – 163Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71F1-180[»]
4V4JX-ray3.83F1-180[»]
4V63X-ray3.21BH/DH1-180[»]
4V67X-ray3.00BH/DH1-180[»]
4V7PX-ray3.62BG/CG1-180[»]
4V83X-ray3.50BG/DG12-170[»]
4V84X-ray3.40BG/DG12-170[»]
4V9JX-ray3.86BH/DH12-178[»]
4V9KX-ray3.50BH/DH12-178[»]
4V9LX-ray3.50BH/DH12-178[»]
4V9MX-ray4.00BH/DH12-178[»]
4V9NX-ray3.40BH/DH12-170[»]
4V9QX-ray3.40AH/CH12-170[»]
4W29X-ray3.80BH/DH12-178[»]
4XEJX-ray3.80AL06/BL0612-170[»]
5J4DX-ray3.10I/NB1-180[»]
ProteinModelPortaliQ72I19.
SMRiQ72I19.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I19.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108R5J. Bacteria.
COG0097. LUCA.
KOiK02933.
OMAiLIANMVE.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B. 1 hit.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I19-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGRLPIP VPKGVSVEVA PGRVKVKGPK GELEVPVSPE MRVVVEEGVV
60 70 80 90 100
RVERPSDERR HKSLHGLTRT LIANAVKGVS EGYSKELLIK GIGYRARLVG
110 120 130 140 150
RALELTVGFS HPVVVEPPEG ITFEVPEPTR VRVSGIDKQK VGQVAANIRA
160 170 180
IRKPSAYHEK GIYYAGEPVR LKPGKAGAKK
Length:180
Mass (Da):19,532
Last modified:July 5, 2004 - v1
Checksum:i1913833C0C30E95D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81655.1.
RefSeqiWP_011173704.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81655; AAS81655; TT_C1313.
KEGGitth:TT_C1313.
PATRICi23953033. VBITheThe54392_1305.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81655.1.
RefSeqiWP_011173704.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71F1-180[»]
4V4JX-ray3.83F1-180[»]
4V63X-ray3.21BH/DH1-180[»]
4V67X-ray3.00BH/DH1-180[»]
4V7PX-ray3.62BG/CG1-180[»]
4V83X-ray3.50BG/DG12-170[»]
4V84X-ray3.40BG/DG12-170[»]
4V9JX-ray3.86BH/DH12-178[»]
4V9KX-ray3.50BH/DH12-178[»]
4V9LX-ray3.50BH/DH12-178[»]
4V9MX-ray4.00BH/DH12-178[»]
4V9NX-ray3.40BH/DH12-170[»]
4V9QX-ray3.40AH/CH12-170[»]
4W29X-ray3.80BH/DH12-178[»]
4XEJX-ray3.80AL06/BL0612-170[»]
5J4DX-ray3.10I/NB1-180[»]
ProteinModelPortaliQ72I19.
SMRiQ72I19.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1313.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81655; AAS81655; TT_C1313.
KEGGitth:TT_C1313.
PATRICi23953033. VBITheThe54392_1305.

Phylogenomic databases

eggNOGiENOG4108R5J. Bacteria.
COG0097. LUCA.
KOiK02933.
OMAiLIANMVE.

Miscellaneous databases

EvolutionaryTraceiQ72I19.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B. 1 hit.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL6_THET2
AccessioniPrimary (citable) accession number: Q72I19
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.