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Q72I16

- RL5_THET2

UniProt

Q72I16 - RL5_THET2

Protein

50S ribosomal protein L5

Gene

rplE

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 3 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1331-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L5UniRule annotation
    Gene namesi
    Name:rplEUniRule annotation
    Ordered Locus Names:TT_C1316
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 18218150S ribosomal protein L5PRO_0000125013Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.UniRule annotation

    Structurei

    Secondary structure

    1
    182
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi6 – 127
    Helixi15 – 228
    Turni28 – 303
    Beta strandi36 – 394
    Turni45 – 484
    Helixi50 – 6415
    Beta strandi69 – 713
    Turni78 – 814
    Beta strandi90 – 945
    Helixi96 – 10813
    Helixi110 – 1134
    Helixi122 – 1243
    Beta strandi127 – 13610
    Helixi138 – 1403
    Beta strandi141 – 1433
    Turni146 – 1483
    Beta strandi155 – 16511
    Helixi166 – 17510

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71E1-182[»]
    1VSPX-ray3.83E1-182[»]
    3D5BX-ray3.21G1-182[»]
    3D5DX-ray3.21G1-182[»]
    3F1FX-ray3.00G1-182[»]
    3F1HX-ray3.00G1-182[»]
    3MRZX-ray3.62F2-182[»]
    3MS1X-ray3.62F2-182[»]
    3PYOX-ray3.50F2-182[»]
    3PYRX-ray3.50F2-182[»]
    3PYTX-ray3.40F2-182[»]
    3PYVX-ray3.40F2-182[»]
    4KBUX-ray3.86G2-182[»]
    4KBWX-ray3.86G2-182[»]
    4KCZX-ray3.50G2-182[»]
    4KD2X-ray3.50G2-182[»]
    4KD9X-ray3.50G2-182[»]
    4KDBX-ray3.50G2-182[»]
    4KDHX-ray4.00G2-182[»]
    4KDKX-ray4.00G2-182[»]
    4KFIX-ray3.40G2-182[»]
    4KFLX-ray3.40G2-182[»]
    4L6JX-ray3.40G2-182[»]
    4L6LX-ray3.40G2-182[»]
    ProteinModelPortaliQ72I16.
    SMRiQ72I16. Positions 3-182.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72I16.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L5P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0094.
    KOiK02931.
    OMAiRISGMDI.
    OrthoDBiEOG6M9F1R.

    Family and domain databases

    Gene3Di3.30.1440.10. 1 hit.
    HAMAPiMF_01333_B. Ribosomal_L5_B.
    InterProiIPR002132. Ribosomal_L5.
    IPR020930. Ribosomal_L5_bac-type.
    IPR020929. Ribosomal_L5_CS.
    IPR022803. Ribosomal_L5_domain.
    [Graphical view]
    PANTHERiPTHR11994. PTHR11994. 1 hit.
    PfamiPF00281. Ribosomal_L5. 1 hit.
    PF00673. Ribosomal_L5_C. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002161. Ribosomal_L5. 1 hit.
    SUPFAMiSSF55282. SSF55282. 1 hit.
    PROSITEiPS00358. RIBOSOMAL_L5. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q72I16-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPLDLALKRK YYEEVRPELI RRFGYQNVWE VPRLEKVVIN QGLGEAKEDA    50
    RILEKAAQEL ALITGQKPAV TRAKKSISNF KLRKGMPIGL RVTLRRDRMW 100
    IFLEKLLNVA LPRIRDFRGL NPNSFDGRGN YNLGLREQLI FPEITYDMVD 150
    ALRGMDIAVV TTAETDEEAR ALLELLGFPF RK 182
    Length:182
    Mass (Da):21,044
    Last modified:January 23, 2007 - v3
    Checksum:iC3A8E0CFD884EEEA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81658.1.
    RefSeqiWP_011173706.1. NC_005835.1.
    YP_005285.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81658; AAS81658; TT_C1316.
    GeneIDi2775564.
    KEGGitth:TTC1316.
    PATRICi23953039. VBITheThe54392_1308.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81658.1 .
    RefSeqi WP_011173706.1. NC_005835.1.
    YP_005285.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 E 1-182 [» ]
    1VSP X-ray 3.83 E 1-182 [» ]
    3D5B X-ray 3.21 G 1-182 [» ]
    3D5D X-ray 3.21 G 1-182 [» ]
    3F1F X-ray 3.00 G 1-182 [» ]
    3F1H X-ray 3.00 G 1-182 [» ]
    3MRZ X-ray 3.62 F 2-182 [» ]
    3MS1 X-ray 3.62 F 2-182 [» ]
    3PYO X-ray 3.50 F 2-182 [» ]
    3PYR X-ray 3.50 F 2-182 [» ]
    3PYT X-ray 3.40 F 2-182 [» ]
    3PYV X-ray 3.40 F 2-182 [» ]
    4KBU X-ray 3.86 G 2-182 [» ]
    4KBW X-ray 3.86 G 2-182 [» ]
    4KCZ X-ray 3.50 G 2-182 [» ]
    4KD2 X-ray 3.50 G 2-182 [» ]
    4KD9 X-ray 3.50 G 2-182 [» ]
    4KDB X-ray 3.50 G 2-182 [» ]
    4KDH X-ray 4.00 G 2-182 [» ]
    4KDK X-ray 4.00 G 2-182 [» ]
    4KFI X-ray 3.40 G 2-182 [» ]
    4KFL X-ray 3.40 G 2-182 [» ]
    4L6J X-ray 3.40 G 2-182 [» ]
    4L6L X-ray 3.40 G 2-182 [» ]
    ProteinModelPortali Q72I16.
    SMRi Q72I16. Positions 3-182.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81658 ; AAS81658 ; TT_C1316 .
    GeneIDi 2775564.
    KEGGi tth:TTC1316.
    PATRICi 23953039. VBITheThe54392_1308.

    Phylogenomic databases

    eggNOGi COG0094.
    KOi K02931.
    OMAi RISGMDI.
    OrthoDBi EOG6M9F1R.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1331-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72I16.

    Family and domain databases

    Gene3Di 3.30.1440.10. 1 hit.
    HAMAPi MF_01333_B. Ribosomal_L5_B.
    InterProi IPR002132. Ribosomal_L5.
    IPR020930. Ribosomal_L5_bac-type.
    IPR020929. Ribosomal_L5_CS.
    IPR022803. Ribosomal_L5_domain.
    [Graphical view ]
    PANTHERi PTHR11994. PTHR11994. 1 hit.
    Pfami PF00281. Ribosomal_L5. 1 hit.
    PF00673. Ribosomal_L5_C. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002161. Ribosomal_L5. 1 hit.
    SUPFAMi SSF55282. SSF55282. 1 hit.
    PROSITEi PS00358. RIBOSOMAL_L5. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL5_THET2
    AccessioniPrimary (citable) accession number: Q72I16
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 72 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3