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Q72I16

- RL5_THET2

UniProt

Q72I16 - RL5_THET2

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Protein

50S ribosomal protein L5

Gene

rplE

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1331-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L5UniRule annotation
Gene namesi
Name:rplEUniRule annotation
Ordered Locus Names:TT_C1316
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 18218150S ribosomal protein L5PRO_0000125013Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.UniRule annotation

Structurei

Secondary structure

1
182
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi6 – 127
Helixi15 – 228
Turni28 – 303
Beta strandi36 – 394
Turni45 – 484
Helixi50 – 6415
Beta strandi69 – 713
Turni78 – 814
Beta strandi90 – 945
Helixi96 – 10813
Helixi110 – 1134
Helixi122 – 1243
Beta strandi127 – 13610
Helixi138 – 1403
Beta strandi141 – 1433
Turni146 – 1483
Beta strandi155 – 16511
Helixi166 – 17510

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71E1-182[»]
1VSPX-ray3.83E1-182[»]
3D5BX-ray3.21G1-182[»]
3D5DX-ray3.21G1-182[»]
3F1FX-ray3.00G1-182[»]
3F1HX-ray3.00G1-182[»]
3MRZX-ray3.62F2-182[»]
3MS1X-ray3.62F2-182[»]
3PYOX-ray3.50F2-182[»]
3PYRX-ray3.50F2-182[»]
3PYTX-ray3.40F2-182[»]
3PYVX-ray3.40F2-182[»]
4KBUX-ray3.86G2-182[»]
4KBWX-ray3.86G2-182[»]
4KCZX-ray3.50G2-182[»]
4KD2X-ray3.50G2-182[»]
4KD9X-ray3.50G2-182[»]
4KDBX-ray3.50G2-182[»]
4KDHX-ray4.00G2-182[»]
4KDKX-ray4.00G2-182[»]
4KFIX-ray3.40G2-182[»]
4KFLX-ray3.40G2-182[»]
4L6JX-ray3.40G2-182[»]
4L6LX-ray3.40G2-182[»]
ProteinModelPortaliQ72I16.
SMRiQ72I16. Positions 3-182.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I16.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L5P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0094.
KOiK02931.
OMAiRISGMDI.
OrthoDBiEOG6M9F1R.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01333_B. Ribosomal_L5_B.
InterProiIPR002132. Ribosomal_L5.
IPR020930. Ribosomal_L5_bac-type.
IPR020929. Ribosomal_L5_CS.
IPR022803. Ribosomal_L5_domain.
[Graphical view]
PANTHERiPTHR11994. PTHR11994. 1 hit.
PfamiPF00281. Ribosomal_L5. 1 hit.
PF00673. Ribosomal_L5_C. 1 hit.
[Graphical view]
PIRSFiPIRSF002161. Ribosomal_L5. 1 hit.
SUPFAMiSSF55282. SSF55282. 1 hit.
PROSITEiPS00358. RIBOSOMAL_L5. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q72I16-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPLDLALKRK YYEEVRPELI RRFGYQNVWE VPRLEKVVIN QGLGEAKEDA
60 70 80 90 100
RILEKAAQEL ALITGQKPAV TRAKKSISNF KLRKGMPIGL RVTLRRDRMW
110 120 130 140 150
IFLEKLLNVA LPRIRDFRGL NPNSFDGRGN YNLGLREQLI FPEITYDMVD
160 170 180
ALRGMDIAVV TTAETDEEAR ALLELLGFPF RK
Length:182
Mass (Da):21,044
Last modified:January 23, 2007 - v3
Checksum:iC3A8E0CFD884EEEA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81658.1.
RefSeqiWP_011173706.1. NC_005835.1.
YP_005285.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81658; AAS81658; TT_C1316.
GeneIDi2775564.
KEGGitth:TTC1316.
PATRICi23953039. VBITheThe54392_1308.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81658.1 .
RefSeqi WP_011173706.1. NC_005835.1.
YP_005285.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 E 1-182 [» ]
1VSP X-ray 3.83 E 1-182 [» ]
3D5B X-ray 3.21 G 1-182 [» ]
3D5D X-ray 3.21 G 1-182 [» ]
3F1F X-ray 3.00 G 1-182 [» ]
3F1H X-ray 3.00 G 1-182 [» ]
3MRZ X-ray 3.62 F 2-182 [» ]
3MS1 X-ray 3.62 F 2-182 [» ]
3PYO X-ray 3.50 F 2-182 [» ]
3PYR X-ray 3.50 F 2-182 [» ]
3PYT X-ray 3.40 F 2-182 [» ]
3PYV X-ray 3.40 F 2-182 [» ]
4KBU X-ray 3.86 G 2-182 [» ]
4KBW X-ray 3.86 G 2-182 [» ]
4KCZ X-ray 3.50 G 2-182 [» ]
4KD2 X-ray 3.50 G 2-182 [» ]
4KD9 X-ray 3.50 G 2-182 [» ]
4KDB X-ray 3.50 G 2-182 [» ]
4KDH X-ray 4.00 G 2-182 [» ]
4KDK X-ray 4.00 G 2-182 [» ]
4KFI X-ray 3.40 G 2-182 [» ]
4KFL X-ray 3.40 G 2-182 [» ]
4L6J X-ray 3.40 G 2-182 [» ]
4L6L X-ray 3.40 G 2-182 [» ]
ProteinModelPortali Q72I16.
SMRi Q72I16. Positions 3-182.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81658 ; AAS81658 ; TT_C1316 .
GeneIDi 2775564.
KEGGi tth:TTC1316.
PATRICi 23953039. VBITheThe54392_1308.

Phylogenomic databases

eggNOGi COG0094.
KOi K02931.
OMAi RISGMDI.
OrthoDBi EOG6M9F1R.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1331-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72I16.

Family and domain databases

Gene3Di 3.30.1440.10. 1 hit.
HAMAPi MF_01333_B. Ribosomal_L5_B.
InterProi IPR002132. Ribosomal_L5.
IPR020930. Ribosomal_L5_bac-type.
IPR020929. Ribosomal_L5_CS.
IPR022803. Ribosomal_L5_domain.
[Graphical view ]
PANTHERi PTHR11994. PTHR11994. 1 hit.
Pfami PF00281. Ribosomal_L5. 1 hit.
PF00673. Ribosomal_L5_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF002161. Ribosomal_L5. 1 hit.
SUPFAMi SSF55282. SSF55282. 1 hit.
PROSITEi PS00358. RIBOSOMAL_L5. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL5_THET2
AccessioniPrimary (citable) accession number: Q72I16
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: October 1, 2014
This is version 72 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3