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Q72I15

- RL24_THET2

UniProt

Q72I15 - RL24_THET2

Protein

50S ribosomal protein L24

Gene

rplX

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.UniRule annotation
    One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1332-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L24UniRule annotation
    Gene namesi
    Name:rplXUniRule annotation
    Ordered Locus Names:TT_C1317
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 11011050S ribosomal protein L24PRO_0000241679Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Structurei

    Secondary structure

    1
    110
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi10 – 156
    Turni19 – 224
    Beta strandi24 – 263
    Beta strandi29 – 313
    Helixi32 – 343
    Beta strandi36 – 383
    Beta strandi40 – 423
    Beta strandi51 – 566
    Helixi69 – 713
    Beta strandi72 – 743
    Beta strandi76 – 794
    Beta strandi84 – 863
    Beta strandi89 – 913
    Beta strandi93 – 953
    Beta strandi97 – 993

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71S1-110[»]
    1VSPX-ray3.83S1-110[»]
    3D5BX-ray3.21Y1-110[»]
    3D5DX-ray3.21Y1-110[»]
    3F1FX-ray3.00Y1-110[»]
    3F1HX-ray3.00Y1-110[»]
    3MRZX-ray3.62U2-110[»]
    3MS1X-ray3.62U2-110[»]
    3PYOX-ray3.50U2-101[»]
    3PYRX-ray3.50U2-101[»]
    3PYTX-ray3.40U2-101[»]
    3PYVX-ray3.40U2-101[»]
    4KBUX-ray3.86Y2-108[»]
    4KBWX-ray3.86Y2-108[»]
    4KCZX-ray3.50Y2-108[»]
    4KD2X-ray3.50Y2-108[»]
    4KD9X-ray3.50Y2-108[»]
    4KDBX-ray3.50Y2-108[»]
    4KDHX-ray4.00Y2-108[»]
    4KDKX-ray4.00Y2-108[»]
    4KFIX-ray3.40Y2-101[»]
    4KFLX-ray3.40Y2-101[»]
    4L6JX-ray3.40U2-101[»]
    4L6LX-ray3.40U2-101[»]
    ProteinModelPortaliQ72I15.
    SMRiQ72I15. Positions 1-110.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72I15.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L24P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0198.
    KOiK02895.
    OMAiEREFPIH.
    OrthoDBiEOG6FFSDM.

    Family and domain databases

    Gene3Di2.30.30.30. 1 hit.
    HAMAPiMF_01326_B. Ribosomal_L24_B.
    InterProiIPR005824. KOW.
    IPR014722. Rib_L2_dom2.
    IPR003256. Ribosomal_L24.
    IPR005825. Ribosomal_L24/26_CS.
    IPR008991. Translation_prot_SH3-like.
    [Graphical view]
    PANTHERiPTHR12903. PTHR12903. 1 hit.
    PfamiPF00467. KOW. 1 hit.
    [Graphical view]
    SMARTiSM00739. KOW. 1 hit.
    [Graphical view]
    SUPFAMiSSF50104. SSF50104. 1 hit.
    TIGRFAMsiTIGR01079. rplX_bact. 1 hit.
    PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q72I15-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRVKMHVKKG DTVLVASGKY KGRVGKVKEV LPKKYAVIVE GVNIVKKAVR    50
    VSPKYPQGGF IEKEAPLHAS KVRPICPACG KPTRVRKKFL ENGKKIRVCA 100
    KCGGALDTEE 110
    Length:110
    Mass (Da):12,057
    Last modified:July 5, 2004 - v1
    Checksum:iA9E773D9A86B819A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81659.1.
    RefSeqiYP_005286.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81659; AAS81659; TT_C1317.
    GeneIDi2775892.
    KEGGitth:TTC1317.
    PATRICi23953041. VBITheThe54392_1309.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81659.1 .
    RefSeqi YP_005286.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 S 1-110 [» ]
    1VSP X-ray 3.83 S 1-110 [» ]
    3D5B X-ray 3.21 Y 1-110 [» ]
    3D5D X-ray 3.21 Y 1-110 [» ]
    3F1F X-ray 3.00 Y 1-110 [» ]
    3F1H X-ray 3.00 Y 1-110 [» ]
    3MRZ X-ray 3.62 U 2-110 [» ]
    3MS1 X-ray 3.62 U 2-110 [» ]
    3PYO X-ray 3.50 U 2-101 [» ]
    3PYR X-ray 3.50 U 2-101 [» ]
    3PYT X-ray 3.40 U 2-101 [» ]
    3PYV X-ray 3.40 U 2-101 [» ]
    4KBU X-ray 3.86 Y 2-108 [» ]
    4KBW X-ray 3.86 Y 2-108 [» ]
    4KCZ X-ray 3.50 Y 2-108 [» ]
    4KD2 X-ray 3.50 Y 2-108 [» ]
    4KD9 X-ray 3.50 Y 2-108 [» ]
    4KDB X-ray 3.50 Y 2-108 [» ]
    4KDH X-ray 4.00 Y 2-108 [» ]
    4KDK X-ray 4.00 Y 2-108 [» ]
    4KFI X-ray 3.40 Y 2-101 [» ]
    4KFL X-ray 3.40 Y 2-101 [» ]
    4L6J X-ray 3.40 U 2-101 [» ]
    4L6L X-ray 3.40 U 2-101 [» ]
    ProteinModelPortali Q72I15.
    SMRi Q72I15. Positions 1-110.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81659 ; AAS81659 ; TT_C1317 .
    GeneIDi 2775892.
    KEGGi tth:TTC1317.
    PATRICi 23953041. VBITheThe54392_1309.

    Phylogenomic databases

    eggNOGi COG0198.
    KOi K02895.
    OMAi EREFPIH.
    OrthoDBi EOG6FFSDM.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1332-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72I15.

    Family and domain databases

    Gene3Di 2.30.30.30. 1 hit.
    HAMAPi MF_01326_B. Ribosomal_L24_B.
    InterProi IPR005824. KOW.
    IPR014722. Rib_L2_dom2.
    IPR003256. Ribosomal_L24.
    IPR005825. Ribosomal_L24/26_CS.
    IPR008991. Translation_prot_SH3-like.
    [Graphical view ]
    PANTHERi PTHR12903. PTHR12903. 1 hit.
    Pfami PF00467. KOW. 1 hit.
    [Graphical view ]
    SMARTi SM00739. KOW. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50104. SSF50104. 1 hit.
    TIGRFAMsi TIGR01079. rplX_bact. 1 hit.
    PROSITEi PS01108. RIBOSOMAL_L24. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL24_THET2
    AccessioniPrimary (citable) accession number: Q72I15
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 27, 2006
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3