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Protein

50S ribosomal protein L24

Gene

rplX

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.UniRule annotation
One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1332-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L24UniRule annotation
Gene namesi
Name:rplXUniRule annotation
Ordered Locus Names:TT_C1317
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11011050S ribosomal protein L24PRO_0000241679Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Structurei

Secondary structure

1
110
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi10 – 156Combined sources
Turni19 – 224Combined sources
Beta strandi24 – 263Combined sources
Beta strandi29 – 313Combined sources
Helixi32 – 343Combined sources
Beta strandi36 – 383Combined sources
Beta strandi40 – 423Combined sources
Beta strandi51 – 566Combined sources
Helixi69 – 713Combined sources
Beta strandi72 – 743Combined sources
Beta strandi76 – 794Combined sources
Beta strandi84 – 863Combined sources
Beta strandi89 – 913Combined sources
Beta strandi93 – 953Combined sources
Beta strandi97 – 993Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71S1-110[»]
4V4JX-ray3.83S1-110[»]
4V63X-ray3.21BY/DY1-110[»]
4V67X-ray3.00BY/DY1-110[»]
4V7PX-ray3.62BU/CU2-110[»]
4V83X-ray3.50BU/DU2-101[»]
4V84X-ray3.40BU/DU2-101[»]
4V9JX-ray3.86BY/DY2-108[»]
4V9KX-ray3.50BY/DY2-108[»]
4V9LX-ray3.50BY/DY2-108[»]
4V9MX-ray4.00BY/DY2-108[»]
4V9NX-ray3.40BY/DY2-101[»]
4V9QX-ray3.40AU/CU2-101[»]
4W29X-ray3.80BY/DY2-108[»]
4XEJX-ray3.80AL24/BL242-101[»]
ProteinModelPortaliQ72I15.
SMRiQ72I15. Positions 1-110.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I15.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0198.
KOiK02895.
OMAiKVMLYCN.
OrthoDBiEOG6FFSDM.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_B. Ribosomal_L24_B.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR003256. Ribosomal_L24.
IPR005825. Ribosomal_L24/26_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR12903. PTHR12903. 1 hit.
PfamiPF00467. KOW. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01079. rplX_bact. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I15-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVKMHVKKG DTVLVASGKY KGRVGKVKEV LPKKYAVIVE GVNIVKKAVR
60 70 80 90 100
VSPKYPQGGF IEKEAPLHAS KVRPICPACG KPTRVRKKFL ENGKKIRVCA
110
KCGGALDTEE
Length:110
Mass (Da):12,057
Last modified:July 5, 2004 - v1
Checksum:iA9E773D9A86B819A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81659.1.
RefSeqiWP_011173707.1. NC_005835.1.
YP_005286.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81659; AAS81659; TT_C1317.
KEGGitth:TTC1317.
PATRICi23953041. VBITheThe54392_1309.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81659.1.
RefSeqiWP_011173707.1. NC_005835.1.
YP_005286.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71S1-110[»]
4V4JX-ray3.83S1-110[»]
4V63X-ray3.21BY/DY1-110[»]
4V67X-ray3.00BY/DY1-110[»]
4V7PX-ray3.62BU/CU2-110[»]
4V83X-ray3.50BU/DU2-101[»]
4V84X-ray3.40BU/DU2-101[»]
4V9JX-ray3.86BY/DY2-108[»]
4V9KX-ray3.50BY/DY2-108[»]
4V9LX-ray3.50BY/DY2-108[»]
4V9MX-ray4.00BY/DY2-108[»]
4V9NX-ray3.40BY/DY2-101[»]
4V9QX-ray3.40AU/CU2-101[»]
4W29X-ray3.80BY/DY2-108[»]
4XEJX-ray3.80AL24/BL242-101[»]
ProteinModelPortaliQ72I15.
SMRiQ72I15. Positions 1-110.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81659; AAS81659; TT_C1317.
KEGGitth:TTC1317.
PATRICi23953041. VBITheThe54392_1309.

Phylogenomic databases

eggNOGiCOG0198.
KOiK02895.
OMAiKVMLYCN.
OrthoDBiEOG6FFSDM.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1332-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I15.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_B. Ribosomal_L24_B.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR003256. Ribosomal_L24.
IPR005825. Ribosomal_L24/26_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR12903. PTHR12903. 1 hit.
PfamiPF00467. KOW. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01079. rplX_bact. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL24_THET2
AccessioniPrimary (citable) accession number: Q72I15
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: July 5, 2004
Last modified: May 27, 2015
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.