50S ribosomal protein L29 - Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)

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Q72I12 (RL29_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 60. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L29

Gene names

Name:	rpmC
Ordered Locus Names:	TT_C1320

Organism

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	72 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L29P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

72

50S ribosomal protein L29 HAMAP-Rule MF_00374

PRO_0000130482

Secondary structure

1

.

.

.

.

.

.

.

.

72

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

Q72I12 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: C113B72000929584
Show »

72

8,650

        10         20         30         40         50         60 
MKLSEVRKQL EEARKLSPVE LEKLVREKKR ELMELRFQAS IGQLSQNHKI RDLKRQIARL 

        70 
LTVLNEKRRQ NA

References

[1]

"The genome sequence of the extreme thermophile Thermus thermophilus."
Henne A., Brueggemann H., Raasch C., Wiezer A., Hartsch T., Liesegang H., Johann A., Lienard T., Gohl O., Martinez-Arias R., Jacobi C., Starkuviene V., Schlenczeck S., Dencker S., Huber R., Klenk H.-P., Kramer W., Merkl R., Gottschalk G., Fritz H.-J.
Nat. Biotechnol. 22:547-553(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB27 / ATCC BAA-163 / DSM 7039.

+

Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE017221 Genomic DNA. Translation: AAS81662.1.

RefSeq

YP_005289.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1VSA	X-ray	3.71	W	1-72	[»]
1VSP	X-ray	3.83	W	1-72	[»]
3D5B	X-ray	3.21	2	1-72	[»]
3D5D	X-ray	3.21	2	1-72	[»]
3F1F	X-ray	3.00	2	1-72	[»]
3F1H	X-ray	3.00	2	1-72	[»]
3MRZ	X-ray	3.62	Y	1-72	[»]
3MS1	X-ray	3.62	Y	1-72	[»]
3PYO	X-ray	3.50	Y	1-62	[»]
3PYR	X-ray	3.50	Y	1-62	[»]
3PYT	X-ray	3.40	Y	1-62	[»]
3PYV	X-ray	3.40	Y	1-62	[»]

ProteinModelPortal

SMR

Q72I12. Positions 1-62.

ModBase

Protein-protein interaction databases

STRING

262724.TTC1320.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AAS81662; AAS81662; TT_C1320.

GeneID

KEGG

PATRIC

23953047. VBITheThe54392_1312.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

KO

OMA

ProtClustDB

Family and domain databases

Gene3D

1.10.287.310. 1 hit.

HAMAP

MF_00374. Ribosomal_L29.

InterPro

IPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]

Pfam

PF00831. Ribosomal_L29. 1 hit.
[Graphical view]

SUPFAM

SSF46561. Ribosomal_L29. 1 hit.

TIGRFAMs

TIGR00012. L29. 1 hit.

PROSITE

PS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

RL29_THET2

Accession

Primary (citable) accession number: Q72I12

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 30, 2005
Last sequence update:	July 5, 2004
Last modified:	May 1, 2013
This is version 60 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents