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Protein

50S ribosomal protein L29

Gene

rpmC

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L29UniRule annotation
Gene namesi
Name:rpmCUniRule annotation
Ordered Locus Names:TT_C1320
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001304821 – 7250S ribosomal protein L29Add BLAST72

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1320.

Structurei

Secondary structure

172
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi2 – 11Combined sources10
Turni12 – 15Combined sources4
Helixi17 – 40Combined sources24
Beta strandi42 – 44Combined sources3
Helixi49 – 61Combined sources13

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71W1-72[»]
4V4JX-ray3.83W1-72[»]
4V63X-ray3.21B2/D21-72[»]
4V67X-ray3.00B2/D21-72[»]
4V7PX-ray3.62BY/CY1-72[»]
4V83X-ray3.50BY/DY1-62[»]
4V84X-ray3.40BY/DY1-62[»]
4V9JX-ray3.86B2/D22-72[»]
4V9KX-ray3.50B2/D22-72[»]
4V9LX-ray3.50B2/D22-72[»]
4V9MX-ray4.00B2/D22-72[»]
4V9NX-ray3.40B2/D21-62[»]
4V9QX-ray3.40AY/CY1-62[»]
4W29X-ray3.80B2/D22-72[»]
4XEJX-ray3.80AL29/BL291-62[»]
5J4DX-ray3.10EC/Z1-72[»]
ProteinModelPortaliQ72I12.
SMRiQ72I12.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I12.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L29P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108CHD. Bacteria.
COG0255. LUCA.
KOiK02904.
OMAiGSLDQTH.

Family and domain databases

CDDicd00427. Ribosomal_L29_HIP. 1 hit.
Gene3Di1.10.287.310. 1 hit.
HAMAPiMF_00374. Ribosomal_L29. 1 hit.
InterProiIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamiPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLSEVRKQL EEARKLSPVE LEKLVREKKR ELMELRFQAS IGQLSQNHKI
60 70
RDLKRQIARL LTVLNEKRRQ NA
Length:72
Mass (Da):8,650
Last modified:July 5, 2004 - v1
Checksum:iC113B72000929584
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81662.1.
RefSeqiWP_008633416.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81662; AAS81662; TT_C1320.
KEGGitth:TT_C1320.
PATRICi23953047. VBITheThe54392_1312.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81662.1.
RefSeqiWP_008633416.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71W1-72[»]
4V4JX-ray3.83W1-72[»]
4V63X-ray3.21B2/D21-72[»]
4V67X-ray3.00B2/D21-72[»]
4V7PX-ray3.62BY/CY1-72[»]
4V83X-ray3.50BY/DY1-62[»]
4V84X-ray3.40BY/DY1-62[»]
4V9JX-ray3.86B2/D22-72[»]
4V9KX-ray3.50B2/D22-72[»]
4V9LX-ray3.50B2/D22-72[»]
4V9MX-ray4.00B2/D22-72[»]
4V9NX-ray3.40B2/D21-62[»]
4V9QX-ray3.40AY/CY1-62[»]
4W29X-ray3.80B2/D22-72[»]
4XEJX-ray3.80AL29/BL291-62[»]
5J4DX-ray3.10EC/Z1-72[»]
ProteinModelPortaliQ72I12.
SMRiQ72I12.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1320.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81662; AAS81662; TT_C1320.
KEGGitth:TT_C1320.
PATRICi23953047. VBITheThe54392_1312.

Phylogenomic databases

eggNOGiENOG4108CHD. Bacteria.
COG0255. LUCA.
KOiK02904.
OMAiGSLDQTH.

Miscellaneous databases

EvolutionaryTraceiQ72I12.

Family and domain databases

CDDicd00427. Ribosomal_L29_HIP. 1 hit.
Gene3Di1.10.287.310. 1 hit.
HAMAPiMF_00374. Ribosomal_L29. 1 hit.
InterProiIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamiPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL29_THET2
AccessioniPrimary (citable) accession number: Q72I12
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.