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Protein

50S ribosomal protein L29

Gene

rpmC

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1335-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L29UniRule annotation
Gene namesi
Name:rpmCUniRule annotation
Ordered Locus Names:TT_C1320
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 727250S ribosomal protein L29PRO_0000130482Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1320.

Structurei

Secondary structure

1
72
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi2 – 1110Combined sources
Turni12 – 154Combined sources
Helixi17 – 4024Combined sources
Beta strandi42 – 443Combined sources
Helixi49 – 6113Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71W1-72[»]
4V4JX-ray3.83W1-72[»]
4V63X-ray3.21B2/D21-72[»]
4V67X-ray3.00B2/D21-72[»]
4V7PX-ray3.62BY/CY1-72[»]
4V83X-ray3.50BY/DY1-62[»]
4V84X-ray3.40BY/DY1-62[»]
4V9JX-ray3.86B2/D22-72[»]
4V9KX-ray3.50B2/D22-72[»]
4V9LX-ray3.50B2/D22-72[»]
4V9MX-ray4.00B2/D22-72[»]
4V9NX-ray3.40B2/D21-62[»]
4V9QX-ray3.40AY/CY1-62[»]
4W29X-ray3.80B2/D22-72[»]
4XEJX-ray3.80AL29/BL291-62[»]
SMRiQ72I12. Positions 1-62.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I12.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L29P family.UniRule annotation

Phylogenomic databases

eggNOGiNOG251102.
KOiK02904.
OMAiGSLDQTH.
OrthoDBiEOG6VTK8Z.

Family and domain databases

Gene3Di1.10.287.310. 1 hit.
HAMAPiMF_00374. Ribosomal_L29.
InterProiIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamiPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLSEVRKQL EEARKLSPVE LEKLVREKKR ELMELRFQAS IGQLSQNHKI
60 70
RDLKRQIARL LTVLNEKRRQ NA
Length:72
Mass (Da):8,650
Last modified:July 5, 2004 - v1
Checksum:iC113B72000929584
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81662.1.
RefSeqiYP_005289.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81662; AAS81662; TT_C1320.
KEGGitth:TTC1320.
PATRICi23953047. VBITheThe54392_1312.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81662.1.
RefSeqiYP_005289.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71W1-72[»]
4V4JX-ray3.83W1-72[»]
4V63X-ray3.21B2/D21-72[»]
4V67X-ray3.00B2/D21-72[»]
4V7PX-ray3.62BY/CY1-72[»]
4V83X-ray3.50BY/DY1-62[»]
4V84X-ray3.40BY/DY1-62[»]
4V9JX-ray3.86B2/D22-72[»]
4V9KX-ray3.50B2/D22-72[»]
4V9LX-ray3.50B2/D22-72[»]
4V9MX-ray4.00B2/D22-72[»]
4V9NX-ray3.40B2/D21-62[»]
4V9QX-ray3.40AY/CY1-62[»]
4W29X-ray3.80B2/D22-72[»]
4XEJX-ray3.80AL29/BL291-62[»]
SMRiQ72I12. Positions 1-62.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1320.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81662; AAS81662; TT_C1320.
KEGGitth:TTC1320.
PATRICi23953047. VBITheThe54392_1312.

Phylogenomic databases

eggNOGiNOG251102.
KOiK02904.
OMAiGSLDQTH.
OrthoDBiEOG6VTK8Z.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1335-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I12.

Family and domain databases

Gene3Di1.10.287.310. 1 hit.
HAMAPiMF_00374. Ribosomal_L29.
InterProiIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamiPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL29_THET2
AccessioniPrimary (citable) accession number: Q72I12
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: July 5, 2004
Last modified: April 29, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.