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Protein

50S ribosomal protein L16

Gene

rplP

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1336-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L16UniRule annotation
Gene namesi
Name:rplPUniRule annotation
Ordered Locus Names:TT_C1321
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14114150S ribosomal protein L16PRO_0000062236Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1321.

Structurei

Secondary structure

1
141
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi19 – 235Combined sources
Beta strandi29 – 3810Combined sources
Beta strandi40 – 434Combined sources
Helixi44 – 5714Combined sources
Beta strandi58 – 603Combined sources
Beta strandi63 – 664Combined sources
Beta strandi72 – 754Combined sources
Beta strandi82 – 854Combined sources
Beta strandi93 – 975Combined sources
Beta strandi102 – 1098Combined sources
Helixi111 – 12212Combined sources
Beta strandi125 – 1273Combined sources
Beta strandi129 – 1324Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71K1-141[»]
4V4JX-ray3.83K1-141[»]
4V63X-ray3.21BQ/DQ1-141[»]
4V67X-ray3.00BQ/DQ1-141[»]
4V7PX-ray3.62BM/CM1-141[»]
4V83X-ray3.50BM/DM6-141[»]
4V84X-ray3.40BM/DM6-141[»]
4V9JX-ray3.86BQ/DQ1-141[»]
4V9KX-ray3.50BQ/DQ1-141[»]
4V9LX-ray3.50BQ/DQ1-141[»]
4V9MX-ray4.00BQ/DQ1-141[»]
4V9NX-ray3.40BQ/DQ6-139[»]
4V9QX-ray3.40AM/CM6-139[»]
4W29X-ray3.80BQ/DQ1-141[»]
4XEJX-ray3.80AL16/BL166-139[»]
ProteinModelPortaliQ72I11.
SMRiQ72I11. Positions 1-137.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I11.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L16P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108R70. Bacteria.
COG0197. LUCA.
KOiK02878.
OMAiKGAVEYW.
OrthoDBiEOG6WHNWS.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I11-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DFGLVALEPA WITAQQIEAA
60 70 80 90 100
RVAMVRHFRR GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG
110 120 130 140
RVMFEVAGVT EEQAMEALRI AGHKLPIKTK IVRRDAYDEA Q
Length:141
Mass (Da):15,947
Last modified:July 5, 2004 - v1
Checksum:i3F08CF3788DCBF38
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81663.1.
RefSeqiWP_011173709.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81663; AAS81663; TT_C1321.
KEGGitth:TTC1321.
PATRICi23953049. VBITheThe54392_1313.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81663.1.
RefSeqiWP_011173709.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71K1-141[»]
4V4JX-ray3.83K1-141[»]
4V63X-ray3.21BQ/DQ1-141[»]
4V67X-ray3.00BQ/DQ1-141[»]
4V7PX-ray3.62BM/CM1-141[»]
4V83X-ray3.50BM/DM6-141[»]
4V84X-ray3.40BM/DM6-141[»]
4V9JX-ray3.86BQ/DQ1-141[»]
4V9KX-ray3.50BQ/DQ1-141[»]
4V9LX-ray3.50BQ/DQ1-141[»]
4V9MX-ray4.00BQ/DQ1-141[»]
4V9NX-ray3.40BQ/DQ6-139[»]
4V9QX-ray3.40AM/CM6-139[»]
4W29X-ray3.80BQ/DQ1-141[»]
4XEJX-ray3.80AL16/BL166-139[»]
ProteinModelPortaliQ72I11.
SMRiQ72I11. Positions 1-137.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1321.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81663; AAS81663; TT_C1321.
KEGGitth:TTC1321.
PATRICi23953049. VBITheThe54392_1313.

Phylogenomic databases

eggNOGiENOG4108R70. Bacteria.
COG0197. LUCA.
KOiK02878.
OMAiKGAVEYW.
OrthoDBiEOG6WHNWS.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1336-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I11.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL16_THET2
AccessioniPrimary (citable) accession number: Q72I11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: July 5, 2004
Last modified: November 11, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.