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Protein

50S ribosomal protein L16

Gene

rplP

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-KW

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1336-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L16UniRule annotation
Gene namesi
Name:rplPUniRule annotation
Ordered Locus Names:TT_C1321
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14114150S ribosomal protein L16PRO_0000062236Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1321.

Structurei

Secondary structure

1
141
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi19 – 235Combined sources
Beta strandi29 – 3810Combined sources
Beta strandi40 – 434Combined sources
Helixi44 – 5714Combined sources
Beta strandi58 – 603Combined sources
Beta strandi63 – 664Combined sources
Beta strandi72 – 754Combined sources
Beta strandi82 – 854Combined sources
Beta strandi93 – 975Combined sources
Beta strandi102 – 1098Combined sources
Helixi111 – 12212Combined sources
Beta strandi125 – 1273Combined sources
Beta strandi129 – 1324Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71K1-141[»]
4V4JX-ray3.83K1-141[»]
4V63X-ray3.21BQ/DQ1-141[»]
4V67X-ray3.00BQ/DQ1-141[»]
4V7PX-ray3.62BM/CM1-141[»]
4V83X-ray3.50BM/DM6-141[»]
4V84X-ray3.40BM/DM6-141[»]
4V9JX-ray3.86BQ/DQ1-141[»]
4V9KX-ray3.50BQ/DQ1-141[»]
4V9LX-ray3.50BQ/DQ1-141[»]
4V9MX-ray4.00BQ/DQ1-141[»]
4V9NX-ray3.40BQ/DQ6-139[»]
4V9QX-ray3.40AM/CM6-139[»]
4W29X-ray3.80BQ/DQ1-141[»]
4XEJX-ray3.80AL16/BL166-139[»]
ProteinModelPortaliQ72I11.
SMRiQ72I11. Positions 1-137.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I11.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L16P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0197.
KOiK02878.
OMAiPVKTKFI.
OrthoDBiEOG6WHNWS.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I11-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DFGLVALEPA WITAQQIEAA
60 70 80 90 100
RVAMVRHFRR GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG
110 120 130 140
RVMFEVAGVT EEQAMEALRI AGHKLPIKTK IVRRDAYDEA Q
Length:141
Mass (Da):15,947
Last modified:July 5, 2004 - v1
Checksum:i3F08CF3788DCBF38
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81663.1.
RefSeqiYP_005290.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81663; AAS81663; TT_C1321.
KEGGitth:TTC1321.
PATRICi23953049. VBITheThe54392_1313.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81663.1.
RefSeqiYP_005290.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71K1-141[»]
4V4JX-ray3.83K1-141[»]
4V63X-ray3.21BQ/DQ1-141[»]
4V67X-ray3.00BQ/DQ1-141[»]
4V7PX-ray3.62BM/CM1-141[»]
4V83X-ray3.50BM/DM6-141[»]
4V84X-ray3.40BM/DM6-141[»]
4V9JX-ray3.86BQ/DQ1-141[»]
4V9KX-ray3.50BQ/DQ1-141[»]
4V9LX-ray3.50BQ/DQ1-141[»]
4V9MX-ray4.00BQ/DQ1-141[»]
4V9NX-ray3.40BQ/DQ6-139[»]
4V9QX-ray3.40AM/CM6-139[»]
4W29X-ray3.80BQ/DQ1-141[»]
4XEJX-ray3.80AL16/BL166-139[»]
ProteinModelPortaliQ72I11.
SMRiQ72I11. Positions 1-137.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1321.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81663; AAS81663; TT_C1321.
KEGGitth:TTC1321.
PATRICi23953049. VBITheThe54392_1313.

Phylogenomic databases

eggNOGiCOG0197.
KOiK02878.
OMAiPVKTKFI.
OrthoDBiEOG6WHNWS.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1336-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72I11.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL16_THET2
AccessioniPrimary (citable) accession number: Q72I11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: July 5, 2004
Last modified: April 29, 2015
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.