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Q72I11

- RL16_THET2

UniProt

Q72I11 - RL16_THET2

Protein

50S ribosomal protein L16

Gene

rplP

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 69 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1336-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L16UniRule annotation
    Gene namesi
    Name:rplPUniRule annotation
    Ordered Locus Names:TT_C1321
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 14114150S ribosomal protein L16PRO_0000062236Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi262724.TTC1321.

    Structurei

    Secondary structure

    1
    141
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi19 – 235
    Beta strandi29 – 3810
    Beta strandi40 – 434
    Helixi44 – 5714
    Beta strandi58 – 603
    Beta strandi63 – 664
    Beta strandi72 – 754
    Beta strandi82 – 854
    Beta strandi93 – 975
    Beta strandi102 – 1098
    Helixi111 – 12212
    Beta strandi125 – 1273
    Beta strandi129 – 1324

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71K1-141[»]
    1VSPX-ray3.83K1-141[»]
    3D5BX-ray3.21Q1-141[»]
    3D5DX-ray3.21Q1-141[»]
    3F1FX-ray3.00Q1-141[»]
    3F1HX-ray3.00Q1-141[»]
    3MRZX-ray3.62M1-141[»]
    3MS1X-ray3.62M1-141[»]
    3PYOX-ray3.50M6-141[»]
    3PYRX-ray3.50M6-141[»]
    3PYTX-ray3.40M6-141[»]
    3PYVX-ray3.40M6-141[»]
    4KBUX-ray3.86Q1-141[»]
    4KBWX-ray3.86Q1-141[»]
    4KCZX-ray3.50Q1-141[»]
    4KD2X-ray3.50Q1-141[»]
    4KD9X-ray3.50Q1-141[»]
    4KDBX-ray3.50Q1-141[»]
    4KDHX-ray4.00Q1-141[»]
    4KDKX-ray4.00Q1-141[»]
    4KFIX-ray3.40Q6-139[»]
    4KFLX-ray3.40Q6-139[»]
    4L6JX-ray3.40M6-139[»]
    4L6LX-ray3.40M6-139[»]
    ProteinModelPortaliQ72I11.
    SMRiQ72I11. Positions 1-137.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72I11.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L16P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0197.
    KOiK02878.
    OMAiWISARQI.
    OrthoDBiEOG6WHNWS.

    Family and domain databases

    Gene3Di3.90.1170.10. 1 hit.
    HAMAPiMF_01342. Ribosomal_L16.
    InterProiIPR016180. Ribosomal_L10e/L16.
    IPR000114. Ribosomal_L16.
    [Graphical view]
    PANTHERiPTHR12220. PTHR12220. 1 hit.
    PfamiPF00252. Ribosomal_L16. 1 hit.
    [Graphical view]
    PRINTSiPR00060. RIBOSOMALL16.
    SUPFAMiSSF54686. SSF54686. 1 hit.
    TIGRFAMsiTIGR01164. rplP_bact. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q72I11-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DFGLVALEPA WITAQQIEAA    50
    RVAMVRHFRR GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG 100
    RVMFEVAGVT EEQAMEALRI AGHKLPIKTK IVRRDAYDEA Q 141
    Length:141
    Mass (Da):15,947
    Last modified:July 5, 2004 - v1
    Checksum:i3F08CF3788DCBF38
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81663.1.
    RefSeqiWP_011173709.1. NC_005835.1.
    YP_005290.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81663; AAS81663; TT_C1321.
    GeneIDi2775155.
    KEGGitth:TTC1321.
    PATRICi23953049. VBITheThe54392_1313.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81663.1 .
    RefSeqi WP_011173709.1. NC_005835.1.
    YP_005290.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 K 1-141 [» ]
    1VSP X-ray 3.83 K 1-141 [» ]
    3D5B X-ray 3.21 Q 1-141 [» ]
    3D5D X-ray 3.21 Q 1-141 [» ]
    3F1F X-ray 3.00 Q 1-141 [» ]
    3F1H X-ray 3.00 Q 1-141 [» ]
    3MRZ X-ray 3.62 M 1-141 [» ]
    3MS1 X-ray 3.62 M 1-141 [» ]
    3PYO X-ray 3.50 M 6-141 [» ]
    3PYR X-ray 3.50 M 6-141 [» ]
    3PYT X-ray 3.40 M 6-141 [» ]
    3PYV X-ray 3.40 M 6-141 [» ]
    4KBU X-ray 3.86 Q 1-141 [» ]
    4KBW X-ray 3.86 Q 1-141 [» ]
    4KCZ X-ray 3.50 Q 1-141 [» ]
    4KD2 X-ray 3.50 Q 1-141 [» ]
    4KD9 X-ray 3.50 Q 1-141 [» ]
    4KDB X-ray 3.50 Q 1-141 [» ]
    4KDH X-ray 4.00 Q 1-141 [» ]
    4KDK X-ray 4.00 Q 1-141 [» ]
    4KFI X-ray 3.40 Q 6-139 [» ]
    4KFL X-ray 3.40 Q 6-139 [» ]
    4L6J X-ray 3.40 M 6-139 [» ]
    4L6L X-ray 3.40 M 6-139 [» ]
    ProteinModelPortali Q72I11.
    SMRi Q72I11. Positions 1-137.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1321.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81663 ; AAS81663 ; TT_C1321 .
    GeneIDi 2775155.
    KEGGi tth:TTC1321.
    PATRICi 23953049. VBITheThe54392_1313.

    Phylogenomic databases

    eggNOGi COG0197.
    KOi K02878.
    OMAi WISARQI.
    OrthoDBi EOG6WHNWS.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1336-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72I11.

    Family and domain databases

    Gene3Di 3.90.1170.10. 1 hit.
    HAMAPi MF_01342. Ribosomal_L16.
    InterProi IPR016180. Ribosomal_L10e/L16.
    IPR000114. Ribosomal_L16.
    [Graphical view ]
    PANTHERi PTHR12220. PTHR12220. 1 hit.
    Pfami PF00252. Ribosomal_L16. 1 hit.
    [Graphical view ]
    PRINTSi PR00060. RIBOSOMALL16.
    SUPFAMi SSF54686. SSF54686. 1 hit.
    TIGRFAMsi TIGR01164. rplP_bact. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL16_THET2
    AccessioniPrimary (citable) accession number: Q72I11
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 10, 2006
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 69 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3