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Q72I11 (RL16_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L16
Gene names
Name:rplP
Ordered Locus Names:TT_C1321
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length141 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs By similarity. HAMAP-Rule MF_01342

Subunit structure

Part of the 50S ribosomal subunit By similarity.

Sequence similarities

Belongs to the ribosomal protein L16P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
tRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

tRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14114150S ribosomal protein L16 HAMAP-Rule MF_01342
PRO_0000062236

Secondary structure

1 ....................... 141
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q72I11 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 3F08CF3788DCBF38

FASTA14115,947
        10         20         30         40         50         60 
MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DFGLVALEPA WITAQQIEAA RVAMVRHFRR 

        70         80         90        100        110        120 
GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG RVMFEVAGVT EEQAMEALRI 

       130        140 
AGHKLPIKTK IVRRDAYDEA Q

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017221 Genomic DNA. Translation: AAS81663.1.
RefSeqYP_005290.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71K1-141[»]
1VSPX-ray3.83K1-141[»]
3D5BX-ray3.21Q1-141[»]
3D5DX-ray3.21Q1-141[»]
3F1FX-ray3.00Q1-141[»]
3F1HX-ray3.00Q1-141[»]
3MRZX-ray3.62M1-141[»]
3MS1X-ray3.62M1-141[»]
3PYOX-ray3.50M6-141[»]
3PYRX-ray3.50M6-141[»]
3PYTX-ray3.40M6-141[»]
3PYVX-ray3.40M6-141[»]
ProteinModelPortalQ72I11.
SMRQ72I11. Positions 1-137.
ModBaseSearch...

Protein-protein interaction databases

STRING262724.TTC1321.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81663; AAS81663; TT_C1321.
GeneID2775155.
KEGGtth:TTC1321.
PATRIC23953049. VBITheThe54392_1313.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0197.
KOK02878.
OMAGAPEYWV.
ProtClustDBPRK09203.

Family and domain databases

HAMAPMF_01342. Ribosomal_L16.
InterProIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERPTHR12220. PTHR12220. 1 hit.
PfamPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSPR00060. RIBOSOMALL16.
SUPFAMSSF54686. Ribosomal_L10e/L16. 1 hit.
TIGRFAMsTIGR01164. rplP_bact. 1 hit.
PROSITEPS00586. RIBOSOMAL_L16_1. False negative.
PS00701. RIBOSOMAL_L16_2. False negative.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ72I11.

Entry information

Entry nameRL16_THET2
AccessionPrimary (citable) accession number: Q72I11
Entry history
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: July 5, 2004
Last modified: May 1, 2013
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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