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Q72I11

- RL16_THET2

UniProt

Q72I11 - RL16_THET2

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Protein

50S ribosomal protein L16

Gene

rplP

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-KW

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1336-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L16UniRule annotation
Gene namesi
Name:rplPUniRule annotation
Ordered Locus Names:TT_C1321
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14114150S ribosomal protein L16PRO_0000062236Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1321.

Structurei

Secondary structure

1
141
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi19 – 235Combined sources
Beta strandi29 – 3810Combined sources
Beta strandi40 – 434Combined sources
Helixi44 – 5714Combined sources
Beta strandi58 – 603Combined sources
Beta strandi63 – 664Combined sources
Beta strandi72 – 754Combined sources
Beta strandi82 – 854Combined sources
Beta strandi93 – 975Combined sources
Beta strandi102 – 1098Combined sources
Helixi111 – 12212Combined sources
Beta strandi125 – 1273Combined sources
Beta strandi129 – 1324Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71K1-141[»]
1VSPX-ray3.83K1-141[»]
3D5BX-ray3.21Q1-141[»]
3D5DX-ray3.21Q1-141[»]
3F1FX-ray3.00Q1-141[»]
3F1HX-ray3.00Q1-141[»]
3MRZX-ray3.62M1-141[»]
3MS1X-ray3.62M1-141[»]
3PYOX-ray3.50M6-141[»]
3PYRX-ray3.50M6-141[»]
3PYTX-ray3.40M6-141[»]
3PYVX-ray3.40M6-141[»]
4KBUX-ray3.86Q1-141[»]
4KBWX-ray3.86Q1-141[»]
4KCZX-ray3.50Q1-141[»]
4KD2X-ray3.50Q1-141[»]
4KD9X-ray3.50Q1-141[»]
4KDBX-ray3.50Q1-141[»]
4KDHX-ray4.00Q1-141[»]
4KDKX-ray4.00Q1-141[»]
4KFIX-ray3.40Q6-139[»]
4KFLX-ray3.40Q6-139[»]
4L6JX-ray3.40M6-139[»]
4L6LX-ray3.40M6-139[»]
4QS1X-ray3.80Q1-141[»]
4QS3X-ray3.80Q1-141[»]
ProteinModelPortaliQ72I11.
SMRiQ72I11. Positions 1-137.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I11.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L16P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0197.
KOiK02878.
OMAiWISARQI.
OrthoDBiEOG6WHNWS.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I11-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DFGLVALEPA WITAQQIEAA
60 70 80 90 100
RVAMVRHFRR GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG
110 120 130 140
RVMFEVAGVT EEQAMEALRI AGHKLPIKTK IVRRDAYDEA Q
Length:141
Mass (Da):15,947
Last modified:July 5, 2004 - v1
Checksum:i3F08CF3788DCBF38
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81663.1.
RefSeqiWP_011173709.1. NC_005835.1.
YP_005290.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81663; AAS81663; TT_C1321.
GeneIDi2775155.
KEGGitth:TTC1321.
PATRICi23953049. VBITheThe54392_1313.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81663.1 .
RefSeqi WP_011173709.1. NC_005835.1.
YP_005290.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 K 1-141 [» ]
1VSP X-ray 3.83 K 1-141 [» ]
3D5B X-ray 3.21 Q 1-141 [» ]
3D5D X-ray 3.21 Q 1-141 [» ]
3F1F X-ray 3.00 Q 1-141 [» ]
3F1H X-ray 3.00 Q 1-141 [» ]
3MRZ X-ray 3.62 M 1-141 [» ]
3MS1 X-ray 3.62 M 1-141 [» ]
3PYO X-ray 3.50 M 6-141 [» ]
3PYR X-ray 3.50 M 6-141 [» ]
3PYT X-ray 3.40 M 6-141 [» ]
3PYV X-ray 3.40 M 6-141 [» ]
4KBU X-ray 3.86 Q 1-141 [» ]
4KBW X-ray 3.86 Q 1-141 [» ]
4KCZ X-ray 3.50 Q 1-141 [» ]
4KD2 X-ray 3.50 Q 1-141 [» ]
4KD9 X-ray 3.50 Q 1-141 [» ]
4KDB X-ray 3.50 Q 1-141 [» ]
4KDH X-ray 4.00 Q 1-141 [» ]
4KDK X-ray 4.00 Q 1-141 [» ]
4KFI X-ray 3.40 Q 6-139 [» ]
4KFL X-ray 3.40 Q 6-139 [» ]
4L6J X-ray 3.40 M 6-139 [» ]
4L6L X-ray 3.40 M 6-139 [» ]
4QS1 X-ray 3.80 Q 1-141 [» ]
4QS3 X-ray 3.80 Q 1-141 [» ]
ProteinModelPortali Q72I11.
SMRi Q72I11. Positions 1-137.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC1321.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81663 ; AAS81663 ; TT_C1321 .
GeneIDi 2775155.
KEGGi tth:TTC1321.
PATRICi 23953049. VBITheThe54392_1313.

Phylogenomic databases

eggNOGi COG0197.
KOi K02878.
OMAi WISARQI.
OrthoDBi EOG6WHNWS.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1336-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72I11.

Family and domain databases

Gene3Di 3.90.1170.10. 1 hit.
HAMAPi MF_01342. Ribosomal_L16.
InterProi IPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view ]
PANTHERi PTHR12220. PTHR12220. 1 hit.
Pfami PF00252. Ribosomal_L16. 1 hit.
[Graphical view ]
PRINTSi PR00060. RIBOSOMALL16.
SUPFAMi SSF54686. SSF54686. 1 hit.
TIGRFAMsi TIGR01164. rplP_bact. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL16_THET2
AccessioniPrimary (citable) accession number: Q72I11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: July 5, 2004
Last modified: November 26, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3