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Q72I06 (RL23_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L23
Gene names
Name:rplW
Ordered Locus Names:TT_C1326
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length96 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity.

Sequence similarities

Belongs to the ribosomal protein L23P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionnucleotide binding

Inferred from electronic annotation. Source: InterPro

rRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 969650S ribosomal protein L23 HAMAP-Rule MF_01369
PRO_1000068182

Secondary structure

................. 96
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q72I06 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 28ABA3C2D83A102A

FASTA9610,737
        10         20         30         40         50         60 
MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK VVKVNTLHVR 

        70         80         90 
GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017221 Genomic DNA. Translation: AAS81668.1.
RefSeqYP_005295.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71R1-96[»]
1VSPX-ray3.83R1-96[»]
3D5BX-ray3.21X1-96[»]
3D5DX-ray3.21X1-96[»]
3F1FX-ray3.00X1-96[»]
3F1HX-ray3.00X1-96[»]
3MRZX-ray3.62T1-96[»]
3MS1X-ray3.62T1-96[»]
3PYOX-ray3.50T3-94[»]
3PYRX-ray3.50T3-94[»]
3PYTX-ray3.40T3-94[»]
3PYVX-ray3.40T3-94[»]
4KBUX-ray3.86X3-95[»]
4KBWX-ray3.86X3-95[»]
4KCZX-ray3.50X3-95[»]
4KD2X-ray3.50X3-95[»]
4KD9X-ray3.50X3-95[»]
4KDBX-ray3.50X3-95[»]
4KDHX-ray4.00X3-95[»]
4KDKX-ray4.00X3-95[»]
4KFIX-ray3.40X3-94[»]
4KFLX-ray3.40X3-94[»]
4L6JX-ray3.40T3-94[»]
4L6LX-ray3.40T3-94[»]
ProteinModelPortalQ72I06.
SMRQ72I06. Positions 1-96.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING262724.TTC1326.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81668; AAS81668; TT_C1326.
GeneID2775887.
KEGGtth:TTC1326.
PATRIC23953059. VBITheThe54392_1318.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0089.
KOK02892.
OMAMIRRENN.
OrthoDBEOG6HTP4P.
ProtClustDBPRK05738.

Enzyme and pathway databases

BioCycTTHE262724:GCAT-1341-MONOMER.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
HAMAPMF_01369_B. Ribosomal_L23_B.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMSSF54189. SSF54189. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ72I06.

Entry information

Entry nameRL23_THET2
AccessionPrimary (citable) accession number: Q72I06
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: July 5, 2004
Last modified: February 19, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references