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Protein

50S ribosomal protein L23

Gene

rplW

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:TT_C1326
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000681821 – 9650S ribosomal protein L23Add BLAST96

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1326.

Structurei

Secondary structure

196
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi7 – 11Combined sources5
Helixi15 – 19Combined sources5
Turni20 – 24Combined sources5
Beta strandi25 – 30Combined sources6
Helixi36 – 47Combined sources12
Beta strandi51 – 59Combined sources9
Beta strandi66 – 68Combined sources3
Beta strandi76 – 83Combined sources8
Helixi90 – 93Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71R1-96[»]
4V4JX-ray3.83R1-96[»]
4V63X-ray3.21BX/DX1-96[»]
4V67X-ray3.00BX/DX1-96[»]
4V7PX-ray3.62BT/CT1-96[»]
4V83X-ray3.50BT/DT3-94[»]
4V84X-ray3.40BT/DT3-94[»]
4V9JX-ray3.86BX/DX3-95[»]
4V9KX-ray3.50BX/DX3-95[»]
4V9LX-ray3.50BX/DX3-95[»]
4V9MX-ray4.00BX/DX3-95[»]
4V9NX-ray3.40BX/DX3-94[»]
4V9QX-ray3.40AT/CT3-94[»]
4W29X-ray3.80BX/DX3-95[»]
4XEJX-ray3.80AL23/BL233-94[»]
5J4DX-ray3.10U/ZB1-96[»]
ProteinModelPortaliQ72I06.
SMRiQ72I06.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I06.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG41080UE. Bacteria.
COG0089. LUCA.
KOiK02892.
OMAiNIMNIRP.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I06-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK
60 70 80 90
VVKVNTLHVR GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI
Length:96
Mass (Da):10,737
Last modified:July 5, 2004 - v1
Checksum:i28ABA3C2D83A102A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81668.1.
RefSeqiWP_008633421.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81668; AAS81668; TT_C1326.
KEGGitth:TT_C1326.
PATRICi23953059. VBITheThe54392_1318.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81668.1.
RefSeqiWP_008633421.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71R1-96[»]
4V4JX-ray3.83R1-96[»]
4V63X-ray3.21BX/DX1-96[»]
4V67X-ray3.00BX/DX1-96[»]
4V7PX-ray3.62BT/CT1-96[»]
4V83X-ray3.50BT/DT3-94[»]
4V84X-ray3.40BT/DT3-94[»]
4V9JX-ray3.86BX/DX3-95[»]
4V9KX-ray3.50BX/DX3-95[»]
4V9LX-ray3.50BX/DX3-95[»]
4V9MX-ray4.00BX/DX3-95[»]
4V9NX-ray3.40BX/DX3-94[»]
4V9QX-ray3.40AT/CT3-94[»]
4W29X-ray3.80BX/DX3-95[»]
4XEJX-ray3.80AL23/BL233-94[»]
5J4DX-ray3.10U/ZB1-96[»]
ProteinModelPortaliQ72I06.
SMRiQ72I06.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1326.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81668; AAS81668; TT_C1326.
KEGGitth:TT_C1326.
PATRICi23953059. VBITheThe54392_1318.

Phylogenomic databases

eggNOGiENOG41080UE. Bacteria.
COG0089. LUCA.
KOiK02892.
OMAiNIMNIRP.

Miscellaneous databases

EvolutionaryTraceiQ72I06.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL23_THET2
AccessioniPrimary (citable) accession number: Q72I06
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.