50S ribosomal protein L23 - Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)

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Q72I06 (RL23_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 70. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23

Gene names

Name:	rplW
Ordered Locus Names:	TT_C1326

Organism

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	96 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity.
Sequence similarities	Belongs to the ribosomal protein L23P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

96

50S ribosomal protein L23 HAMAP-Rule MF_01369

PRO_1000068182

Secondary structure

1

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96

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

Q72I06 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 28ABA3C2D83A102A
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96

10,737

        10         20         30         40         50         60 
MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK VVKVNTLHVR 

        70         80         90 
GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI

References

[1]

"The genome sequence of the extreme thermophile Thermus thermophilus."
Henne A., Brueggemann H., Raasch C., Wiezer A., Hartsch T., Liesegang H., Johann A., Lienard T., Gohl O., Martinez-Arias R., Jacobi C., Starkuviene V., Schlenczeck S., Dencker S., Huber R., Klenk H.-P., Kramer W., Merkl R., Gottschalk G., Fritz H.-J.
Nat. Biotechnol. 22:547-553(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB27 / ATCC BAA-163 / DSM 7039.

+

Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE017221 Genomic DNA. Translation: AAS81668.1.

RefSeq

YP_005295.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1VSA	X-ray	3.71	R	1-96	[»]
1VSP	X-ray	3.83	R	1-96	[»]
3D5B	X-ray	3.21	X	1-96	[»]
3D5D	X-ray	3.21	X	1-96	[»]
3F1F	X-ray	3.00	X	1-96	[»]
3F1H	X-ray	3.00	X	1-96	[»]
3MRZ	X-ray	3.62	T	1-96	[»]
3MS1	X-ray	3.62	T	1-96	[»]
3PYO	X-ray	3.50	T	3-94	[»]
3PYR	X-ray	3.50	T	3-94	[»]
3PYT	X-ray	3.40	T	3-94	[»]
3PYV	X-ray	3.40	T	3-94	[»]

ProteinModelPortal

SMR

Q72I06. Positions 1-96.

ModBase

Protein-protein interaction databases

STRING

262724.TTC1326.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AAS81668; AAS81668; TT_C1326.

GeneID

KEGG

PATRIC

23953059. VBITheThe54392_1318.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

KO

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

TTHE262724:GCAT-1341-MONOMER.

Family and domain databases

Gene3D

3.30.70.330. 1 hit.

HAMAP

MF_01369_B. Ribosomal_L23_B.

InterPro

IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]

Pfam

PF00276. Ribosomal_L23. 1 hit.
[Graphical view]

SUPFAM

SSF54189. L23_L15e_core. 1 hit.

PROSITE

PS00050. RIBOSOMAL_L23. False negative.
[Graphical view]

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

RL23_THET2

Accession

Primary (citable) accession number: Q72I06

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	July 5, 2004
Last modified:	May 29, 2013
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents