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Q72I06

- RL23_THET2

UniProt

Q72I06 - RL23_THET2

Protein

50S ribosomal protein L23

Gene

rplW

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1341-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L23UniRule annotation
    Gene namesi
    Name:rplWUniRule annotation
    Ordered Locus Names:TT_C1326
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 969650S ribosomal protein L23PRO_1000068182Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

    Protein-protein interaction databases

    STRINGi262724.TTC1326.

    Structurei

    Secondary structure

    1
    96
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi7 – 115
    Helixi15 – 195
    Turni20 – 245
    Beta strandi25 – 306
    Helixi36 – 4712
    Beta strandi51 – 599
    Beta strandi66 – 683
    Beta strandi76 – 838
    Helixi90 – 934

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71R1-96[»]
    1VSPX-ray3.83R1-96[»]
    3D5BX-ray3.21X1-96[»]
    3D5DX-ray3.21X1-96[»]
    3F1FX-ray3.00X1-96[»]
    3F1HX-ray3.00X1-96[»]
    3MRZX-ray3.62T1-96[»]
    3MS1X-ray3.62T1-96[»]
    3PYOX-ray3.50T3-94[»]
    3PYRX-ray3.50T3-94[»]
    3PYTX-ray3.40T3-94[»]
    3PYVX-ray3.40T3-94[»]
    4KBUX-ray3.86X3-95[»]
    4KBWX-ray3.86X3-95[»]
    4KCZX-ray3.50X3-95[»]
    4KD2X-ray3.50X3-95[»]
    4KD9X-ray3.50X3-95[»]
    4KDBX-ray3.50X3-95[»]
    4KDHX-ray4.00X3-95[»]
    4KDKX-ray4.00X3-95[»]
    4KFIX-ray3.40X3-94[»]
    4KFLX-ray3.40X3-94[»]
    4L6JX-ray3.40T3-94[»]
    4L6LX-ray3.40T3-94[»]
    ProteinModelPortaliQ72I06.
    SMRiQ72I06. Positions 1-96.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72I06.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L23P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0089.
    KOiK02892.
    OMAiMRRPEEI.
    OrthoDBiEOG6HTP4P.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    HAMAPiMF_01369_B. Ribosomal_L23_B.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR013025. Ribosomal_L25/23.
    [Graphical view]
    PfamiPF00276. Ribosomal_L23. 1 hit.
    [Graphical view]
    SUPFAMiSSF54189. SSF54189. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q72I06-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK   50
    VVKVNTLHVR GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI 96
    Length:96
    Mass (Da):10,737
    Last modified:July 5, 2004 - v1
    Checksum:i28ABA3C2D83A102A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81668.1.
    RefSeqiYP_005295.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81668; AAS81668; TT_C1326.
    GeneIDi2775887.
    KEGGitth:TTC1326.
    PATRICi23953059. VBITheThe54392_1318.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81668.1 .
    RefSeqi YP_005295.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 R 1-96 [» ]
    1VSP X-ray 3.83 R 1-96 [» ]
    3D5B X-ray 3.21 X 1-96 [» ]
    3D5D X-ray 3.21 X 1-96 [» ]
    3F1F X-ray 3.00 X 1-96 [» ]
    3F1H X-ray 3.00 X 1-96 [» ]
    3MRZ X-ray 3.62 T 1-96 [» ]
    3MS1 X-ray 3.62 T 1-96 [» ]
    3PYO X-ray 3.50 T 3-94 [» ]
    3PYR X-ray 3.50 T 3-94 [» ]
    3PYT X-ray 3.40 T 3-94 [» ]
    3PYV X-ray 3.40 T 3-94 [» ]
    4KBU X-ray 3.86 X 3-95 [» ]
    4KBW X-ray 3.86 X 3-95 [» ]
    4KCZ X-ray 3.50 X 3-95 [» ]
    4KD2 X-ray 3.50 X 3-95 [» ]
    4KD9 X-ray 3.50 X 3-95 [» ]
    4KDB X-ray 3.50 X 3-95 [» ]
    4KDH X-ray 4.00 X 3-95 [» ]
    4KDK X-ray 4.00 X 3-95 [» ]
    4KFI X-ray 3.40 X 3-94 [» ]
    4KFL X-ray 3.40 X 3-94 [» ]
    4L6J X-ray 3.40 T 3-94 [» ]
    4L6L X-ray 3.40 T 3-94 [» ]
    ProteinModelPortali Q72I06.
    SMRi Q72I06. Positions 1-96.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1326.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81668 ; AAS81668 ; TT_C1326 .
    GeneIDi 2775887.
    KEGGi tth:TTC1326.
    PATRICi 23953059. VBITheThe54392_1318.

    Phylogenomic databases

    eggNOGi COG0089.
    KOi K02892.
    OMAi MRRPEEI.
    OrthoDBi EOG6HTP4P.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1341-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72I06.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    HAMAPi MF_01369_B. Ribosomal_L23_B.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR013025. Ribosomal_L25/23.
    [Graphical view ]
    Pfami PF00276. Ribosomal_L23. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54189. SSF54189. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL23_THET2
    AccessioniPrimary (citable) accession number: Q72I06
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 5, 2008
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 75 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3