Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q72I06

- RL23_THET2

UniProt

Q72I06 - RL23_THET2

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

50S ribosomal protein L23

Gene

rplW

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1341-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:TT_C1326
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 969650S ribosomal protein L23PRO_1000068182Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1326.

Structurei

Secondary structure

1
96
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 115Combined sources
Helixi15 – 195Combined sources
Turni20 – 245Combined sources
Beta strandi25 – 306Combined sources
Helixi36 – 4712Combined sources
Beta strandi51 – 599Combined sources
Beta strandi66 – 683Combined sources
Beta strandi76 – 838Combined sources
Helixi90 – 934Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71R1-96[»]
1VSPX-ray3.83R1-96[»]
3D5BX-ray3.21X1-96[»]
3D5DX-ray3.21X1-96[»]
3F1FX-ray3.00X1-96[»]
3F1HX-ray3.00X1-96[»]
3MRZX-ray3.62T1-96[»]
3MS1X-ray3.62T1-96[»]
3PYOX-ray3.50T3-94[»]
3PYRX-ray3.50T3-94[»]
3PYTX-ray3.40T3-94[»]
3PYVX-ray3.40T3-94[»]
4KBUX-ray3.86X3-95[»]
4KBWX-ray3.86X3-95[»]
4KCZX-ray3.50X3-95[»]
4KD2X-ray3.50X3-95[»]
4KD9X-ray3.50X3-95[»]
4KDBX-ray3.50X3-95[»]
4KDHX-ray4.00X3-95[»]
4KDKX-ray4.00X3-95[»]
4KFIX-ray3.40X3-94[»]
4KFLX-ray3.40X3-94[»]
4L6JX-ray3.40T3-94[»]
4L6LX-ray3.40T3-94[»]
4QS1X-ray3.80X3-95[»]
4QS3X-ray3.80X3-95[»]
ProteinModelPortaliQ72I06.
SMRiQ72I06. Positions 1-96.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I06.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0089.
KOiK02892.
OMAiMRRPEEI.
OrthoDBiEOG6HTP4P.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I06-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK
60 70 80 90
VVKVNTLHVR GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI
Length:96
Mass (Da):10,737
Last modified:July 5, 2004 - v1
Checksum:i28ABA3C2D83A102A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81668.1.
RefSeqiYP_005295.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81668; AAS81668; TT_C1326.
GeneIDi2775887.
KEGGitth:TTC1326.
PATRICi23953059. VBITheThe54392_1318.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81668.1 .
RefSeqi YP_005295.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 R 1-96 [» ]
1VSP X-ray 3.83 R 1-96 [» ]
3D5B X-ray 3.21 X 1-96 [» ]
3D5D X-ray 3.21 X 1-96 [» ]
3F1F X-ray 3.00 X 1-96 [» ]
3F1H X-ray 3.00 X 1-96 [» ]
3MRZ X-ray 3.62 T 1-96 [» ]
3MS1 X-ray 3.62 T 1-96 [» ]
3PYO X-ray 3.50 T 3-94 [» ]
3PYR X-ray 3.50 T 3-94 [» ]
3PYT X-ray 3.40 T 3-94 [» ]
3PYV X-ray 3.40 T 3-94 [» ]
4KBU X-ray 3.86 X 3-95 [» ]
4KBW X-ray 3.86 X 3-95 [» ]
4KCZ X-ray 3.50 X 3-95 [» ]
4KD2 X-ray 3.50 X 3-95 [» ]
4KD9 X-ray 3.50 X 3-95 [» ]
4KDB X-ray 3.50 X 3-95 [» ]
4KDH X-ray 4.00 X 3-95 [» ]
4KDK X-ray 4.00 X 3-95 [» ]
4KFI X-ray 3.40 X 3-94 [» ]
4KFL X-ray 3.40 X 3-94 [» ]
4L6J X-ray 3.40 T 3-94 [» ]
4L6L X-ray 3.40 T 3-94 [» ]
4QS1 X-ray 3.80 X 3-95 [» ]
4QS3 X-ray 3.80 X 3-95 [» ]
ProteinModelPortali Q72I06.
SMRi Q72I06. Positions 1-96.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC1326.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81668 ; AAS81668 ; TT_C1326 .
GeneIDi 2775887.
KEGGi tth:TTC1326.
PATRICi 23953059. VBITheThe54392_1318.

Phylogenomic databases

eggNOGi COG0089.
KOi K02892.
OMAi MRRPEEI.
OrthoDBi EOG6HTP4P.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1341-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72I06.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_01369_B. Ribosomal_L23_B.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL23_THET2
AccessioniPrimary (citable) accession number: Q72I06
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: July 5, 2004
Last modified: November 26, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3