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Q72I05

- RL4_THET2

UniProt

Q72I05 - RL4_THET2

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Protein

50S ribosomal protein L4

Gene

rplD

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.UniRule annotation
Forms part of the polypeptide exit tunnel.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1342-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L4UniRule annotation
Gene namesi
Name:rplDUniRule annotation
Ordered Locus Names:TT_C1327
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20520550S ribosomal protein L4PRO_0000242455Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Structurei

Secondary structure

1
205
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 63Combined sources
Beta strandi13 – 153Combined sources
Helixi25 – 3814Combined sources
Beta strandi48 – 514Combined sources
Beta strandi52 – 543Combined sources
Beta strandi62 – 654Combined sources
Beta strandi73 – 753Combined sources
Beta strandi78 – 814Combined sources
Beta strandi83 – 853Combined sources
Helixi98 – 11518Combined sources
Beta strandi118 – 1214Combined sources
Turni125 – 1295Combined sources
Helixi131 – 1399Combined sources
Turni140 – 1423Combined sources
Beta strandi145 – 1473Combined sources
Beta strandi149 – 1524Combined sources
Helixi156 – 1649Combined sources
Beta strandi168 – 1714Combined sources
Helixi173 – 1753Combined sources
Helixi178 – 1814Combined sources
Beta strandi184 – 1907Combined sources
Helixi191 – 20010Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71D1-205[»]
1VSPX-ray3.83D1-205[»]
3D5BX-ray3.21F1-205[»]
3D5DX-ray3.21F1-205[»]
3MRZX-ray3.62E1-205[»]
3MS1X-ray3.62E1-205[»]
3PYOX-ray3.50E1-202[»]
3PYRX-ray3.50E1-202[»]
3PYTX-ray3.40E1-202[»]
3PYVX-ray3.40E1-202[»]
4KBUX-ray3.86F1-203[»]
4KBWX-ray3.86F1-203[»]
4KCZX-ray3.50F1-203[»]
4KD2X-ray3.50F1-203[»]
4KD9X-ray3.50F1-203[»]
4KDBX-ray3.50F1-203[»]
4KDHX-ray4.00F1-203[»]
4KDKX-ray4.00F1-203[»]
4KFIX-ray3.40F1-202[»]
4KFLX-ray3.40F1-202[»]
4L6JX-ray3.40F1-202[»]
4L6LX-ray3.40F1-202[»]
4QS1X-ray3.80F1-203[»]
4QS3X-ray3.80F1-203[»]
ProteinModelPortaliQ72I05.
SMRiQ72I05. Positions 4-197.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I05.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L4P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0088.
KOiK02926.
OMAiRSIMANQ.
OrthoDBiEOG6M0T9G.

Family and domain databases

Gene3Di3.40.1370.10. 1 hit.
HAMAPiMF_01328_B. Ribosomal_L4_B.
InterProiIPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view]
PANTHERiPTHR10746. PTHR10746. 1 hit.
PfamiPF00573. Ribosomal_L4. 1 hit.
[Graphical view]
SUPFAMiSSF52166. SSF52166. 1 hit.
TIGRFAMsiTIGR03953. rplD_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72I05-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYQIPVLSPS GRRELAADLP AEINPHLLWE VVRWQLAKRR RGTASTKTRG
60 70 80 90 100
EVAYSGRKIW PQKHTGRARH GDIGAPIFVG GGVVFGPKPR DYSYTLPKKV
110 120 130 140 150
RKKGLAMAVA DRAREGKLLL VEAFAGVNGK TKEFLAWAKE AGLDGSESVL
160 170 180 190 200
LVTGNELVRR AARNLPWVVT LAPEGLNVYD IVRTERLVMD LDAWEVFQNR

IGGEA
Length:205
Mass (Da):22,708
Last modified:July 5, 2004 - v1
Checksum:iFC50A700F8CBC324
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81669.1.
RefSeqiYP_005296.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81669; AAS81669; TT_C1327.
GeneIDi2776371.
KEGGitth:TTC1327.
PATRICi23953061. VBITheThe54392_1319.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81669.1 .
RefSeqi YP_005296.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 D 1-205 [» ]
1VSP X-ray 3.83 D 1-205 [» ]
3D5B X-ray 3.21 F 1-205 [» ]
3D5D X-ray 3.21 F 1-205 [» ]
3MRZ X-ray 3.62 E 1-205 [» ]
3MS1 X-ray 3.62 E 1-205 [» ]
3PYO X-ray 3.50 E 1-202 [» ]
3PYR X-ray 3.50 E 1-202 [» ]
3PYT X-ray 3.40 E 1-202 [» ]
3PYV X-ray 3.40 E 1-202 [» ]
4KBU X-ray 3.86 F 1-203 [» ]
4KBW X-ray 3.86 F 1-203 [» ]
4KCZ X-ray 3.50 F 1-203 [» ]
4KD2 X-ray 3.50 F 1-203 [» ]
4KD9 X-ray 3.50 F 1-203 [» ]
4KDB X-ray 3.50 F 1-203 [» ]
4KDH X-ray 4.00 F 1-203 [» ]
4KDK X-ray 4.00 F 1-203 [» ]
4KFI X-ray 3.40 F 1-202 [» ]
4KFL X-ray 3.40 F 1-202 [» ]
4L6J X-ray 3.40 F 1-202 [» ]
4L6L X-ray 3.40 F 1-202 [» ]
4QS1 X-ray 3.80 F 1-203 [» ]
4QS3 X-ray 3.80 F 1-203 [» ]
ProteinModelPortali Q72I05.
SMRi Q72I05. Positions 4-197.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81669 ; AAS81669 ; TT_C1327 .
GeneIDi 2776371.
KEGGi tth:TTC1327.
PATRICi 23953061. VBITheThe54392_1319.

Phylogenomic databases

eggNOGi COG0088.
KOi K02926.
OMAi RSIMANQ.
OrthoDBi EOG6M0T9G.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1342-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72I05.

Family and domain databases

Gene3Di 3.40.1370.10. 1 hit.
HAMAPi MF_01328_B. Ribosomal_L4_B.
InterProi IPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view ]
PANTHERi PTHR10746. PTHR10746. 1 hit.
Pfami PF00573. Ribosomal_L4. 1 hit.
[Graphical view ]
SUPFAMi SSF52166. SSF52166. 1 hit.
TIGRFAMsi TIGR03953. rplD_bact. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL4_THET2
AccessioniPrimary (citable) accession number: Q72I05
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: July 5, 2004
Last modified: November 26, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3