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Q72I05 (RL4_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L4
Gene names
Name:rplD
Ordered Locus Names:TT_C1327
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length205 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome By similarity. HAMAP-Rule MF_01328

Forms part of the polypeptide exit tunnel By similarity. HAMAP-Rule MF_01328

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L4P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 20520550S ribosomal protein L4 HAMAP-Rule MF_01328
PRO_0000242455

Secondary structure

.......................................... 205
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q72I05 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: FC50A700F8CBC324

FASTA20522,708
        10         20         30         40         50         60 
MYQIPVLSPS GRRELAADLP AEINPHLLWE VVRWQLAKRR RGTASTKTRG EVAYSGRKIW 

        70         80         90        100        110        120 
PQKHTGRARH GDIGAPIFVG GGVVFGPKPR DYSYTLPKKV RKKGLAMAVA DRAREGKLLL 

       130        140        150        160        170        180 
VEAFAGVNGK TKEFLAWAKE AGLDGSESVL LVTGNELVRR AARNLPWVVT LAPEGLNVYD 

       190        200 
IVRTERLVMD LDAWEVFQNR IGGEA 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017221 Genomic DNA. Translation: AAS81669.1.
RefSeqYP_005296.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71D1-205[»]
1VSPX-ray3.83D1-205[»]
3D5BX-ray3.21F1-205[»]
3D5DX-ray3.21F1-205[»]
3MRZX-ray3.62E1-205[»]
3MS1X-ray3.62E1-205[»]
3PYOX-ray3.50E1-202[»]
3PYRX-ray3.50E1-202[»]
3PYTX-ray3.40E1-202[»]
3PYVX-ray3.40E1-202[»]
4KBUX-ray3.86F2-203[»]
4KBWX-ray3.86F2-203[»]
4KCZX-ray3.50F2-203[»]
4KD2X-ray3.50F2-203[»]
4KD9X-ray3.50F2-203[»]
4KDBX-ray3.50F2-203[»]
4KDHX-ray4.00F2-203[»]
4KDKX-ray4.00F2-203[»]
4KFIX-ray3.40F1-202[»]
4KFLX-ray3.40F1-202[»]
4L6JX-ray3.40F1-202[»]
4L6LX-ray3.40F1-202[»]
ProteinModelPortalQ72I05.
SMRQ72I05. Positions 4-197.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81669; AAS81669; TT_C1327.
GeneID2776371.
KEGGtth:TTC1327.
PATRIC23953061. VBITheThe54392_1319.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0088.
KOK02926.
OMATWKSLRN.
OrthoDBEOG6M0T9G.
ProtClustDBPRK05319.

Enzyme and pathway databases

BioCycTTHE262724:GCAT-1342-MONOMER.

Family and domain databases

Gene3D3.40.1370.10. 1 hit.
HAMAPMF_01328_B. Ribosomal_L4_B.
InterProIPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view]
PANTHERPTHR10746. PTHR10746. 1 hit.
PfamPF00573. Ribosomal_L4. 1 hit.
[Graphical view]
SUPFAMSSF52166. SSF52166. 1 hit.
TIGRFAMsTIGR03953. rplD_bact. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ72I05.

Entry information

Entry nameRL4_THET2
AccessionPrimary (citable) accession number: Q72I05
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: July 5, 2004
Last modified: February 19, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references