Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q72I04

- RL3_THET2

UniProt

Q72I04 - RL3_THET2

Protein

50S ribosomal protein L3

Gene

rplC

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 70 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1343-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L3UniRule annotation
    Gene namesi
    Name:rplCUniRule annotation
    Ordered Locus Names:TT_C1328
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20620650S ribosomal protein L3PRO_0000241428Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.UniRule annotation

    Structurei

    Secondary structure

    1
    206
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi3 – 1614
    Beta strandi19 – 279
    Beta strandi31 – 377
    Turni39 – 413
    Beta strandi42 – 443
    Beta strandi46 – 538
    Turni56 – 627
    Helixi63 – 686
    Turni69 – 713
    Beta strandi75 – 828
    Beta strandi88 – 914
    Helixi93 – 953
    Beta strandi98 – 1003
    Beta strandi101 – 1077
    Beta strandi110 – 1134
    Helixi116 – 1194
    Beta strandi127 – 1304
    Turni133 – 1364
    Turni145 – 1473
    Beta strandi159 – 17618
    Turni177 – 1804
    Beta strandi181 – 1844
    Beta strandi194 – 2007

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71C1-206[»]
    1VSPX-ray3.83C1-206[»]
    3D5BX-ray3.21E1-206[»]
    3D5DX-ray3.21E1-206[»]
    3F1FX-ray3.00E1-206[»]
    3F1HX-ray3.00E1-206[»]
    3MRZX-ray3.62D1-206[»]
    3MS1X-ray3.62D1-206[»]
    3PYOX-ray3.50D1-204[»]
    3PYRX-ray3.50D1-204[»]
    3PYTX-ray3.40D1-204[»]
    3PYVX-ray3.40D1-204[»]
    4KBUX-ray3.86E1-205[»]
    4KBWX-ray3.86E1-205[»]
    4KCZX-ray3.50E1-205[»]
    4KD2X-ray3.50E1-205[»]
    4KD9X-ray3.50E1-205[»]
    4KDBX-ray3.50E1-205[»]
    4KDHX-ray4.00E1-205[»]
    4KDKX-ray4.00E1-205[»]
    4KFIX-ray3.40E1-204[»]
    4KFLX-ray3.40E1-204[»]
    4L6JX-ray3.40E1-204[»]
    4L6LX-ray3.40E1-204[»]
    ProteinModelPortaliQ72I04.
    SMRiQ72I04. Positions 1-206.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72I04.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L3P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0087.
    KOiK02906.
    OMAiAYQIGIG.
    OrthoDBiEOG6WDSMH.

    Family and domain databases

    HAMAPiMF_01325_B. Ribosomal_L3_B.
    InterProiIPR000597. Ribosomal_L3.
    IPR019927. Ribosomal_L3_bac/org-type.
    IPR019926. Ribosomal_L3_CS.
    IPR009000. Transl_B-barrel.
    [Graphical view]
    PANTHERiPTHR11229. PTHR11229. 1 hit.
    PfamiPF00297. Ribosomal_L3. 1 hit.
    [Graphical view]
    SUPFAMiSSF50447. SSF50447. 1 hit.
    TIGRFAMsiTIGR03625. L3_bact. 1 hit.
    PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q72I04-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKGILGVKVG MTRIFRDDRA VPVTVILAGP CPVVQRRTPE KDGYTAVQLG    50
    FLPQNPKRVN RPLKGHFAKA GVEPVRILRE IRDFNPEGDT VTVEIFKPGE 100
    RVDVTGTSKG RGFAGVMKRW NFAGGPDSHG AHKIHRHPGS IGNRKTPGRV 150
    YKGKKMAGHY GAERVTVMNL EVVDVIPEEN LLLVKGAVPG PNGGLVIVRE 200
    TKKAAK 206
    Length:206
    Mass (Da):22,408
    Last modified:July 5, 2004 - v1
    Checksum:iA920741478CB6028
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81670.1.
    RefSeqiYP_005297.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81670; AAS81670; TT_C1328.
    GeneIDi2775727.
    KEGGitth:TTC1328.
    PATRICi23953063. VBITheThe54392_1320.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81670.1 .
    RefSeqi YP_005297.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 C 1-206 [» ]
    1VSP X-ray 3.83 C 1-206 [» ]
    3D5B X-ray 3.21 E 1-206 [» ]
    3D5D X-ray 3.21 E 1-206 [» ]
    3F1F X-ray 3.00 E 1-206 [» ]
    3F1H X-ray 3.00 E 1-206 [» ]
    3MRZ X-ray 3.62 D 1-206 [» ]
    3MS1 X-ray 3.62 D 1-206 [» ]
    3PYO X-ray 3.50 D 1-204 [» ]
    3PYR X-ray 3.50 D 1-204 [» ]
    3PYT X-ray 3.40 D 1-204 [» ]
    3PYV X-ray 3.40 D 1-204 [» ]
    4KBU X-ray 3.86 E 1-205 [» ]
    4KBW X-ray 3.86 E 1-205 [» ]
    4KCZ X-ray 3.50 E 1-205 [» ]
    4KD2 X-ray 3.50 E 1-205 [» ]
    4KD9 X-ray 3.50 E 1-205 [» ]
    4KDB X-ray 3.50 E 1-205 [» ]
    4KDH X-ray 4.00 E 1-205 [» ]
    4KDK X-ray 4.00 E 1-205 [» ]
    4KFI X-ray 3.40 E 1-204 [» ]
    4KFL X-ray 3.40 E 1-204 [» ]
    4L6J X-ray 3.40 E 1-204 [» ]
    4L6L X-ray 3.40 E 1-204 [» ]
    ProteinModelPortali Q72I04.
    SMRi Q72I04. Positions 1-206.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81670 ; AAS81670 ; TT_C1328 .
    GeneIDi 2775727.
    KEGGi tth:TTC1328.
    PATRICi 23953063. VBITheThe54392_1320.

    Phylogenomic databases

    eggNOGi COG0087.
    KOi K02906.
    OMAi AYQIGIG.
    OrthoDBi EOG6WDSMH.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1343-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72I04.

    Family and domain databases

    HAMAPi MF_01325_B. Ribosomal_L3_B.
    InterProi IPR000597. Ribosomal_L3.
    IPR019927. Ribosomal_L3_bac/org-type.
    IPR019926. Ribosomal_L3_CS.
    IPR009000. Transl_B-barrel.
    [Graphical view ]
    PANTHERi PTHR11229. PTHR11229. 1 hit.
    Pfami PF00297. Ribosomal_L3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50447. SSF50447. 1 hit.
    TIGRFAMsi TIGR03625. L3_bact. 1 hit.
    PROSITEi PS00474. RIBOSOMAL_L3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL3_THET2
    AccessioniPrimary (citable) accession number: Q72I04
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 27, 2006
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3