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Q72I04 (RL3_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L3
Gene names
Name:rplC
Ordered Locus Names:TT_C1328
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit By similarity. HAMAP-Rule MF_01325

Subunit structure

Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19 By similarity.

Sequence similarities

Belongs to the ribosomal protein L3P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 20620650S ribosomal protein L3 HAMAP-Rule MF_01325
PRO_0000241428

Secondary structure

......................................... 206
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q72I04 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: A920741478CB6028

FASTA20622,408
        10         20         30         40         50         60 
MKGILGVKVG MTRIFRDDRA VPVTVILAGP CPVVQRRTPE KDGYTAVQLG FLPQNPKRVN 

        70         80         90        100        110        120 
RPLKGHFAKA GVEPVRILRE IRDFNPEGDT VTVEIFKPGE RVDVTGTSKG RGFAGVMKRW 

       130        140        150        160        170        180 
NFAGGPDSHG AHKIHRHPGS IGNRKTPGRV YKGKKMAGHY GAERVTVMNL EVVDVIPEEN 

       190        200 
LLLVKGAVPG PNGGLVIVRE TKKAAK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017221 Genomic DNA. Translation: AAS81670.1.
RefSeqYP_005297.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71C1-206[»]
1VSPX-ray3.83C1-206[»]
3D5BX-ray3.21E1-206[»]
3D5DX-ray3.21E1-206[»]
3F1FX-ray3.00E1-206[»]
3F1HX-ray3.00E1-206[»]
3MRZX-ray3.62D1-206[»]
3MS1X-ray3.62D1-206[»]
3PYOX-ray3.50D1-204[»]
3PYRX-ray3.50D1-204[»]
3PYTX-ray3.40D1-204[»]
3PYVX-ray3.40D1-204[»]
4KBUX-ray3.86E1-205[»]
4KBWX-ray3.86E1-205[»]
4KCZX-ray3.50E1-205[»]
4KD2X-ray3.50E1-205[»]
4KD9X-ray3.50E1-205[»]
4KDBX-ray3.50E1-205[»]
4KDHX-ray4.00E1-205[»]
4KDKX-ray4.00E1-205[»]
4KFIX-ray3.40E1-204[»]
4KFLX-ray3.40E1-204[»]
4L6JX-ray3.40E1-204[»]
4L6LX-ray3.40E1-204[»]
ProteinModelPortalQ72I04.
SMRQ72I04. Positions 1-206.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81670; AAS81670; TT_C1328.
GeneID2775727.
KEGGtth:TTC1328.
PATRIC23953063. VBITheThe54392_1320.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0087.
KOK02906.
OMAKGMRMAG.
OrthoDBEOG6WDSMH.
ProtClustDBPRK00001.

Enzyme and pathway databases

BioCycTTHE262724:GCAT-1343-MONOMER.

Family and domain databases

HAMAPMF_01325_B. Ribosomal_L3_B.
InterProIPR000597. Ribosomal_L3.
IPR019927. Ribosomal_L3_bac/org-type.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERPTHR11229. PTHR11229. 1 hit.
PfamPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMSSF50447. SSF50447. 1 hit.
TIGRFAMsTIGR03625. L3_bact. 1 hit.
PROSITEPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ72I04.

Entry information

Entry nameRL3_THET2
AccessionPrimary (citable) accession number: Q72I04
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: July 5, 2004
Last modified: February 19, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references