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Q72I04

- RL3_THET2

UniProt

Q72I04 - RL3_THET2

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Protein

50S ribosomal protein L3

Gene

rplC

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1343-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L3UniRule annotation
Gene namesi
Name:rplCUniRule annotation
Ordered Locus Names:TT_C1328
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20620650S ribosomal protein L3PRO_0000241428Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.UniRule annotation

Structurei

Secondary structure

1
206
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 1614
Beta strandi19 – 279
Beta strandi31 – 377
Turni39 – 413
Beta strandi42 – 443
Beta strandi46 – 538
Turni56 – 627
Helixi63 – 686
Turni69 – 713
Beta strandi75 – 828
Beta strandi88 – 914
Helixi93 – 953
Beta strandi98 – 1003
Beta strandi101 – 1077
Beta strandi110 – 1134
Helixi116 – 1194
Beta strandi127 – 1304
Turni133 – 1364
Turni145 – 1473
Beta strandi159 – 17618
Turni177 – 1804
Beta strandi181 – 1844
Beta strandi194 – 2007

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71C1-206[»]
1VSPX-ray3.83C1-206[»]
3D5BX-ray3.21E1-206[»]
3D5DX-ray3.21E1-206[»]
3F1FX-ray3.00E1-206[»]
3F1HX-ray3.00E1-206[»]
3MRZX-ray3.62D1-206[»]
3MS1X-ray3.62D1-206[»]
3PYOX-ray3.50D1-204[»]
3PYRX-ray3.50D1-204[»]
3PYTX-ray3.40D1-204[»]
3PYVX-ray3.40D1-204[»]
4KBUX-ray3.86E1-205[»]
4KBWX-ray3.86E1-205[»]
4KCZX-ray3.50E1-205[»]
4KD2X-ray3.50E1-205[»]
4KD9X-ray3.50E1-205[»]
4KDBX-ray3.50E1-205[»]
4KDHX-ray4.00E1-205[»]
4KDKX-ray4.00E1-205[»]
4KFIX-ray3.40E1-204[»]
4KFLX-ray3.40E1-204[»]
4L6JX-ray3.40E1-204[»]
4L6LX-ray3.40E1-204[»]
ProteinModelPortaliQ72I04.
SMRiQ72I04. Positions 1-206.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72I04.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L3P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0087.
KOiK02906.
OMAiAYQIGIG.
OrthoDBiEOG6WDSMH.

Family and domain databases

HAMAPiMF_01325_B. Ribosomal_L3_B.
InterProiIPR000597. Ribosomal_L3.
IPR019927. Ribosomal_L3_bac/org-type.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR11229. PTHR11229. 1 hit.
PfamiPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR03625. L3_bact. 1 hit.
PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72I04 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKGILGVKVG MTRIFRDDRA VPVTVILAGP CPVVQRRTPE KDGYTAVQLG
60 70 80 90 100
FLPQNPKRVN RPLKGHFAKA GVEPVRILRE IRDFNPEGDT VTVEIFKPGE
110 120 130 140 150
RVDVTGTSKG RGFAGVMKRW NFAGGPDSHG AHKIHRHPGS IGNRKTPGRV
160 170 180 190 200
YKGKKMAGHY GAERVTVMNL EVVDVIPEEN LLLVKGAVPG PNGGLVIVRE

TKKAAK
Length:206
Mass (Da):22,408
Last modified:July 5, 2004 - v1
Checksum:iA920741478CB6028
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81670.1.
RefSeqiYP_005297.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81670; AAS81670; TT_C1328.
GeneIDi2775727.
KEGGitth:TTC1328.
PATRICi23953063. VBITheThe54392_1320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81670.1 .
RefSeqi YP_005297.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 C 1-206 [» ]
1VSP X-ray 3.83 C 1-206 [» ]
3D5B X-ray 3.21 E 1-206 [» ]
3D5D X-ray 3.21 E 1-206 [» ]
3F1F X-ray 3.00 E 1-206 [» ]
3F1H X-ray 3.00 E 1-206 [» ]
3MRZ X-ray 3.62 D 1-206 [» ]
3MS1 X-ray 3.62 D 1-206 [» ]
3PYO X-ray 3.50 D 1-204 [» ]
3PYR X-ray 3.50 D 1-204 [» ]
3PYT X-ray 3.40 D 1-204 [» ]
3PYV X-ray 3.40 D 1-204 [» ]
4KBU X-ray 3.86 E 1-205 [» ]
4KBW X-ray 3.86 E 1-205 [» ]
4KCZ X-ray 3.50 E 1-205 [» ]
4KD2 X-ray 3.50 E 1-205 [» ]
4KD9 X-ray 3.50 E 1-205 [» ]
4KDB X-ray 3.50 E 1-205 [» ]
4KDH X-ray 4.00 E 1-205 [» ]
4KDK X-ray 4.00 E 1-205 [» ]
4KFI X-ray 3.40 E 1-204 [» ]
4KFL X-ray 3.40 E 1-204 [» ]
4L6J X-ray 3.40 E 1-204 [» ]
4L6L X-ray 3.40 E 1-204 [» ]
ProteinModelPortali Q72I04.
SMRi Q72I04. Positions 1-206.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81670 ; AAS81670 ; TT_C1328 .
GeneIDi 2775727.
KEGGi tth:TTC1328.
PATRICi 23953063. VBITheThe54392_1320.

Phylogenomic databases

eggNOGi COG0087.
KOi K02906.
OMAi AYQIGIG.
OrthoDBi EOG6WDSMH.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1343-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72I04.

Family and domain databases

HAMAPi MF_01325_B. Ribosomal_L3_B.
InterProi IPR000597. Ribosomal_L3.
IPR019927. Ribosomal_L3_bac/org-type.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view ]
PANTHERi PTHR11229. PTHR11229. 1 hit.
Pfami PF00297. Ribosomal_L3. 1 hit.
[Graphical view ]
SUPFAMi SSF50447. SSF50447. 1 hit.
TIGRFAMsi TIGR03625. L3_bact. 1 hit.
PROSITEi PS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL3_THET2
AccessioniPrimary (citable) accession number: Q72I04
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: July 5, 2004
Last modified: October 1, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3