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Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1441-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27UniRule annotation
Gene namesi
Name:rpmAUniRule annotation
Ordered Locus Names:TT_C1423
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 858450S ribosomal protein L27PRO_0000181193Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1423.

Structurei

Secondary structure

1
85
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi22 – 254Combined sources
Beta strandi27 – 348Combined sources
Beta strandi36 – 394Combined sources
Beta strandi41 – 466Combined sources
Beta strandi51 – 533Combined sources
Turni55 – 573Combined sources
Beta strandi59 – 7113Combined sources
Turni73 – 753Combined sources
Beta strandi77 – 826Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71U1-85[»]
4V4JX-ray3.83U1-85[»]
4V63X-ray3.21B0/D01-85[»]
4V67X-ray3.00B0/D01-85[»]
4V7PX-ray3.62BW/CW2-85[»]
4V83X-ray3.50BW/DW10-85[»]
4V84X-ray3.40BW/DW10-85[»]
4V9JX-ray3.86B0/D02-85[»]
4V9KX-ray3.50B0/D02-85[»]
4V9LX-ray3.50B0/D02-85[»]
4V9MX-ray4.00B0/D02-85[»]
4V9NX-ray3.40B0/D010-85[»]
4V9QX-ray3.40AW/CW10-85[»]
4W29X-ray3.80B0/D02-85[»]
4XEJX-ray3.80AL27/BL2710-85[»]
ProteinModelPortaliQ72HR3.
SMRiQ72HR3. Positions 10-85.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72HR3.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L27P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0211.
KOiK02899.
OMAiKDHTLHA.
OrthoDBiEOG6N94H6.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q72HR3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHKKGLGST KNGRDSQAKR LGVKRYEGQV VRAGNILVRQ RGTRFKPGKN
60 70 80
VGMGRDFTLF ALVDGVVEFQ DRGRLGRYVH VRPLA
Length:85
Mass (Da):9,480
Last modified:January 23, 2007 - v3
Checksum:i7F0477004B83A515
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81765.1.
RefSeqiWP_008633580.1. NC_005835.1.
YP_005392.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81765; AAS81765; TT_C1423.
KEGGitth:TTC1423.
PATRICi23953263. VBITheThe54392_1417.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81765.1.
RefSeqiWP_008633580.1. NC_005835.1.
YP_005392.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71U1-85[»]
4V4JX-ray3.83U1-85[»]
4V63X-ray3.21B0/D01-85[»]
4V67X-ray3.00B0/D01-85[»]
4V7PX-ray3.62BW/CW2-85[»]
4V83X-ray3.50BW/DW10-85[»]
4V84X-ray3.40BW/DW10-85[»]
4V9JX-ray3.86B0/D02-85[»]
4V9KX-ray3.50B0/D02-85[»]
4V9LX-ray3.50B0/D02-85[»]
4V9MX-ray4.00B0/D02-85[»]
4V9NX-ray3.40B0/D010-85[»]
4V9QX-ray3.40AW/CW10-85[»]
4W29X-ray3.80B0/D02-85[»]
4XEJX-ray3.80AL27/BL2710-85[»]
ProteinModelPortaliQ72HR3.
SMRiQ72HR3. Positions 10-85.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1423.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81765; AAS81765; TT_C1423.
KEGGitth:TTC1423.
PATRICi23953263. VBITheThe54392_1417.

Phylogenomic databases

eggNOGiCOG0211.
KOiK02899.
OMAiKDHTLHA.
OrthoDBiEOG6N94H6.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1441-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72HR3.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL27_THET2
AccessioniPrimary (citable) accession number: Q72HR3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: January 23, 2007
Last modified: May 27, 2015
This is version 79 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.