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Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1441-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27UniRule annotation
Gene namesi
Name:rpmAUniRule annotation
Ordered Locus Names:TT_C1423
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 858450S ribosomal protein L27PRO_0000181193Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1423.

Structurei

Secondary structure

1
85
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi22 – 254Combined sources
Beta strandi27 – 348Combined sources
Beta strandi36 – 394Combined sources
Beta strandi41 – 466Combined sources
Beta strandi51 – 533Combined sources
Turni55 – 573Combined sources
Beta strandi59 – 7113Combined sources
Turni73 – 753Combined sources
Beta strandi77 – 826Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71U1-85[»]
4V4JX-ray3.83U1-85[»]
4V63X-ray3.21B0/D01-85[»]
4V67X-ray3.00B0/D01-85[»]
4V7PX-ray3.62BW/CW2-85[»]
4V83X-ray3.50BW/DW10-85[»]
4V84X-ray3.40BW/DW10-85[»]
4V9JX-ray3.86B0/D02-85[»]
4V9KX-ray3.50B0/D02-85[»]
4V9LX-ray3.50B0/D02-85[»]
4V9MX-ray4.00B0/D02-85[»]
4V9NX-ray3.40B0/D010-85[»]
4V9QX-ray3.40AW/CW10-85[»]
4W29X-ray3.80B0/D02-85[»]
4XEJX-ray3.80AL27/BL2710-85[»]
5J4DX-ray3.10CC/X1-85[»]
ProteinModelPortaliQ72HR3.
SMRiQ72HR3. Positions 10-85.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72HR3.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L27P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
KOiK02899.
OMAiNGRNNKK.
OrthoDBiEOG6N94H6.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q72HR3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHKKGLGST KNGRDSQAKR LGVKRYEGQV VRAGNILVRQ RGTRFKPGKN
60 70 80
VGMGRDFTLF ALVDGVVEFQ DRGRLGRYVH VRPLA
Length:85
Mass (Da):9,480
Last modified:January 23, 2007 - v3
Checksum:i7F0477004B83A515
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81765.1.
RefSeqiWP_008633580.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81765; AAS81765; TT_C1423.
KEGGitth:TTC1423.
PATRICi23953263. VBITheThe54392_1417.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81765.1.
RefSeqiWP_008633580.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71U1-85[»]
4V4JX-ray3.83U1-85[»]
4V63X-ray3.21B0/D01-85[»]
4V67X-ray3.00B0/D01-85[»]
4V7PX-ray3.62BW/CW2-85[»]
4V83X-ray3.50BW/DW10-85[»]
4V84X-ray3.40BW/DW10-85[»]
4V9JX-ray3.86B0/D02-85[»]
4V9KX-ray3.50B0/D02-85[»]
4V9LX-ray3.50B0/D02-85[»]
4V9MX-ray4.00B0/D02-85[»]
4V9NX-ray3.40B0/D010-85[»]
4V9QX-ray3.40AW/CW10-85[»]
4W29X-ray3.80B0/D02-85[»]
4XEJX-ray3.80AL27/BL2710-85[»]
5J4DX-ray3.10CC/X1-85[»]
ProteinModelPortaliQ72HR3.
SMRiQ72HR3. Positions 10-85.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1423.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81765; AAS81765; TT_C1423.
KEGGitth:TTC1423.
PATRICi23953263. VBITheThe54392_1417.

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
KOiK02899.
OMAiNGRNNKK.
OrthoDBiEOG6N94H6.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1441-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72HR3.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL27_THET2
AccessioniPrimary (citable) accession number: Q72HR3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: January 23, 2007
Last modified: July 6, 2016
This is version 84 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.