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Protein

50S ribosomal protein L21

Gene

rplU

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

This protein binds to 23S rRNA in the presence of protein L20.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1442-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L21UniRule annotation
Gene namesi
Name:rplUUniRule annotation
Ordered Locus Names:TT_C1424
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10110150S ribosomal protein L21PRO_0000269415Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L20.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1424.

Structurei

Secondary structure

1
101
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 74Combined sources
Beta strandi10 – 134Combined sources
Beta strandi19 – 235Combined sources
Beta strandi32 – 343Combined sources
Beta strandi42 – 443Combined sources
Beta strandi48 – 514Combined sources
Beta strandi53 – 553Combined sources
Beta strandi58 – 658Combined sources
Beta strandi70 – 767Combined sources
Turni77 – 804Combined sources
Beta strandi81 – 877Combined sources
Beta strandi91 – 966Combined sources
Beta strandi98 – 1003Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71P1-101[»]
4V4JX-ray3.83P1-101[»]
4V63X-ray3.21BV/DV1-101[»]
4V67X-ray3.00BV/DV1-101[»]
4V7PX-ray3.62BR/CR1-101[»]
4V83X-ray3.50BR/DR1-101[»]
4V84X-ray3.40BR/DR1-101[»]
4V9JX-ray3.86BV/DV1-101[»]
4V9KX-ray3.50BV/DV1-101[»]
4V9LX-ray3.50BV/DV1-101[»]
4V9MX-ray4.00BV/DV1-101[»]
4V9NX-ray3.40BV/DV1-101[»]
4V9QX-ray3.40AR/CR1-101[»]
4W29X-ray3.80BV/DV1-101[»]
ProteinModelPortaliQ72HR2.
SMRiQ72HR2. Positions 1-101.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72HR2.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L21P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0261.
KOiK02888.
OMAiQGHRQQY.
OrthoDBiEOG6TJ84X.

Family and domain databases

HAMAPiMF_01363. Ribosomal_L21.
InterProiIPR028909. L21p-like.
IPR001787. Ribosomal_L21.
[Graphical view]
PfamiPF00829. Ribosomal_L21p. 1 hit.
[Graphical view]
SUPFAMiSSF141091. SSF141091. 1 hit.
TIGRFAMsiTIGR00061. L21. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72HR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFAIVKTGGK QYRVEPGLKL RVEKLDAEPG ATVELPVLLL GGEKTVVGTP
60 70 80 90 100
VVEGASVVAE VLGHGRGKKI LVSKFKAKVQ YRRKKGHRQP YTELLIKEIR

G
Length:101
Mass (Da):11,047
Last modified:July 5, 2004 - v1
Checksum:i3117549029950A0C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81766.1.
RefSeqiYP_005393.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81766; AAS81766; TT_C1424.
GeneIDi2774973.
KEGGitth:TTC1424.
PATRICi23953265. VBITheThe54392_1418.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81766.1.
RefSeqiYP_005393.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71P1-101[»]
4V4JX-ray3.83P1-101[»]
4V63X-ray3.21BV/DV1-101[»]
4V67X-ray3.00BV/DV1-101[»]
4V7PX-ray3.62BR/CR1-101[»]
4V83X-ray3.50BR/DR1-101[»]
4V84X-ray3.40BR/DR1-101[»]
4V9JX-ray3.86BV/DV1-101[»]
4V9KX-ray3.50BV/DV1-101[»]
4V9LX-ray3.50BV/DV1-101[»]
4V9MX-ray4.00BV/DV1-101[»]
4V9NX-ray3.40BV/DV1-101[»]
4V9QX-ray3.40AR/CR1-101[»]
4W29X-ray3.80BV/DV1-101[»]
ProteinModelPortaliQ72HR2.
SMRiQ72HR2. Positions 1-101.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1424.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81766; AAS81766; TT_C1424.
GeneIDi2774973.
KEGGitth:TTC1424.
PATRICi23953265. VBITheThe54392_1418.

Phylogenomic databases

eggNOGiCOG0261.
KOiK02888.
OMAiQGHRQQY.
OrthoDBiEOG6TJ84X.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1442-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72HR2.

Family and domain databases

HAMAPiMF_01363. Ribosomal_L21.
InterProiIPR028909. L21p-like.
IPR001787. Ribosomal_L21.
[Graphical view]
PfamiPF00829. Ribosomal_L21p. 1 hit.
[Graphical view]
SUPFAMiSSF141091. SSF141091. 1 hit.
TIGRFAMsiTIGR00061. L21. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL21_THET2
AccessioniPrimary (citable) accession number: Q72HR2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: July 5, 2004
Last modified: March 4, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.