Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q72HR2

- RL21_THET2

UniProt

Q72HR2 - RL21_THET2

Protein

50S ribosomal protein L21

Gene

rplU

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    This protein binds to 23S rRNA in the presence of protein L20.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1442-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L21UniRule annotation
    Gene namesi
    Name:rplUUniRule annotation
    Ordered Locus Names:TT_C1424
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 10110150S ribosomal protein L21PRO_0000269415Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Contacts protein L20.UniRule annotation

    Protein-protein interaction databases

    STRINGi262724.TTC1424.

    Structurei

    Secondary structure

    1
    101
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi4 – 74
    Beta strandi10 – 134
    Beta strandi19 – 235
    Beta strandi32 – 343
    Beta strandi42 – 443
    Beta strandi48 – 514
    Beta strandi53 – 553
    Beta strandi58 – 658
    Beta strandi70 – 767
    Turni77 – 804
    Beta strandi81 – 877
    Beta strandi91 – 966
    Beta strandi98 – 1003

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71P1-101[»]
    1VSPX-ray3.83P1-101[»]
    3D5BX-ray3.21V1-101[»]
    3D5DX-ray3.21V1-101[»]
    3F1FX-ray3.00V1-101[»]
    3F1HX-ray3.00V1-101[»]
    3MRZX-ray3.62R1-101[»]
    3MS1X-ray3.62R1-101[»]
    3PYOX-ray3.50R1-101[»]
    3PYRX-ray3.50R1-101[»]
    3PYTX-ray3.40R1-101[»]
    3PYVX-ray3.40R1-101[»]
    4KBUX-ray3.86V1-101[»]
    4KBWX-ray3.86V1-101[»]
    4KCZX-ray3.50V1-101[»]
    4KD2X-ray3.50V1-101[»]
    4KD9X-ray3.50V1-101[»]
    4KDBX-ray3.50V1-101[»]
    4KDHX-ray4.00V1-101[»]
    4KDKX-ray4.00V1-101[»]
    4KFIX-ray3.40V1-101[»]
    4KFLX-ray3.40V1-101[»]
    4L6JX-ray3.40R1-101[»]
    4L6LX-ray3.40R1-101[»]
    ProteinModelPortaliQ72HR2.
    SMRiQ72HR2. Positions 1-101.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72HR2.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L21P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0261.
    KOiK02888.
    OMAiYVIVEIN.
    OrthoDBiEOG6TJ84X.

    Family and domain databases

    HAMAPiMF_01363. Ribosomal_L21.
    InterProiIPR028909. L21p-like.
    IPR001787. Ribosomal_L21.
    [Graphical view]
    PfamiPF00829. Ribosomal_L21p. 1 hit.
    [Graphical view]
    SUPFAMiSSF141091. SSF141091. 1 hit.
    TIGRFAMsiTIGR00061. L21. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q72HR2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFAIVKTGGK QYRVEPGLKL RVEKLDAEPG ATVELPVLLL GGEKTVVGTP    50
    VVEGASVVAE VLGHGRGKKI LVSKFKAKVQ YRRKKGHRQP YTELLIKEIR 100
    G 101
    Length:101
    Mass (Da):11,047
    Last modified:July 5, 2004 - v1
    Checksum:i3117549029950A0C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81766.1.
    RefSeqiYP_005393.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81766; AAS81766; TT_C1424.
    GeneIDi2774973.
    KEGGitth:TTC1424.
    PATRICi23953265. VBITheThe54392_1418.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81766.1 .
    RefSeqi YP_005393.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 P 1-101 [» ]
    1VSP X-ray 3.83 P 1-101 [» ]
    3D5B X-ray 3.21 V 1-101 [» ]
    3D5D X-ray 3.21 V 1-101 [» ]
    3F1F X-ray 3.00 V 1-101 [» ]
    3F1H X-ray 3.00 V 1-101 [» ]
    3MRZ X-ray 3.62 R 1-101 [» ]
    3MS1 X-ray 3.62 R 1-101 [» ]
    3PYO X-ray 3.50 R 1-101 [» ]
    3PYR X-ray 3.50 R 1-101 [» ]
    3PYT X-ray 3.40 R 1-101 [» ]
    3PYV X-ray 3.40 R 1-101 [» ]
    4KBU X-ray 3.86 V 1-101 [» ]
    4KBW X-ray 3.86 V 1-101 [» ]
    4KCZ X-ray 3.50 V 1-101 [» ]
    4KD2 X-ray 3.50 V 1-101 [» ]
    4KD9 X-ray 3.50 V 1-101 [» ]
    4KDB X-ray 3.50 V 1-101 [» ]
    4KDH X-ray 4.00 V 1-101 [» ]
    4KDK X-ray 4.00 V 1-101 [» ]
    4KFI X-ray 3.40 V 1-101 [» ]
    4KFL X-ray 3.40 V 1-101 [» ]
    4L6J X-ray 3.40 R 1-101 [» ]
    4L6L X-ray 3.40 R 1-101 [» ]
    ProteinModelPortali Q72HR2.
    SMRi Q72HR2. Positions 1-101.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1424.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81766 ; AAS81766 ; TT_C1424 .
    GeneIDi 2774973.
    KEGGi tth:TTC1424.
    PATRICi 23953265. VBITheThe54392_1418.

    Phylogenomic databases

    eggNOGi COG0261.
    KOi K02888.
    OMAi YVIVEIN.
    OrthoDBi EOG6TJ84X.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1442-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72HR2.

    Family and domain databases

    HAMAPi MF_01363. Ribosomal_L21.
    InterProi IPR028909. L21p-like.
    IPR001787. Ribosomal_L21.
    [Graphical view ]
    Pfami PF00829. Ribosomal_L21p. 1 hit.
    [Graphical view ]
    SUPFAMi SSF141091. SSF141091. 1 hit.
    TIGRFAMsi TIGR00061. L21. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL21_THET2
    AccessioniPrimary (citable) accession number: Q72HR2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 12, 2006
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3