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Q72HR2

- RL21_THET2

UniProt

Q72HR2 - RL21_THET2

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Protein

50S ribosomal protein L21

Gene

rplU

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

This protein binds to 23S rRNA in the presence of protein L20.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1442-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L21UniRule annotation
Gene namesi
Name:rplUUniRule annotation
Ordered Locus Names:TT_C1424
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10110150S ribosomal protein L21PRO_0000269415Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L20.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1424.

Structurei

Secondary structure

1
101
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 74
Beta strandi10 – 134
Beta strandi19 – 235
Beta strandi32 – 343
Beta strandi42 – 443
Beta strandi48 – 514
Beta strandi53 – 553
Beta strandi58 – 658
Beta strandi70 – 767
Turni77 – 804
Beta strandi81 – 877
Beta strandi91 – 966
Beta strandi98 – 1003

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71P1-101[»]
1VSPX-ray3.83P1-101[»]
3D5BX-ray3.21V1-101[»]
3D5DX-ray3.21V1-101[»]
3F1FX-ray3.00V1-101[»]
3F1HX-ray3.00V1-101[»]
3MRZX-ray3.62R1-101[»]
3MS1X-ray3.62R1-101[»]
3PYOX-ray3.50R1-101[»]
3PYRX-ray3.50R1-101[»]
3PYTX-ray3.40R1-101[»]
3PYVX-ray3.40R1-101[»]
4KBUX-ray3.86V1-101[»]
4KBWX-ray3.86V1-101[»]
4KCZX-ray3.50V1-101[»]
4KD2X-ray3.50V1-101[»]
4KD9X-ray3.50V1-101[»]
4KDBX-ray3.50V1-101[»]
4KDHX-ray4.00V1-101[»]
4KDKX-ray4.00V1-101[»]
4KFIX-ray3.40V1-101[»]
4KFLX-ray3.40V1-101[»]
4L6JX-ray3.40R1-101[»]
4L6LX-ray3.40R1-101[»]
ProteinModelPortaliQ72HR2.
SMRiQ72HR2. Positions 1-101.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72HR2.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L21P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0261.
KOiK02888.
OMAiYVIVEIN.
OrthoDBiEOG6TJ84X.

Family and domain databases

HAMAPiMF_01363. Ribosomal_L21.
InterProiIPR028909. L21p-like.
IPR001787. Ribosomal_L21.
[Graphical view]
PfamiPF00829. Ribosomal_L21p. 1 hit.
[Graphical view]
SUPFAMiSSF141091. SSF141091. 1 hit.
TIGRFAMsiTIGR00061. L21. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72HR2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFAIVKTGGK QYRVEPGLKL RVEKLDAEPG ATVELPVLLL GGEKTVVGTP
60 70 80 90 100
VVEGASVVAE VLGHGRGKKI LVSKFKAKVQ YRRKKGHRQP YTELLIKEIR

G
Length:101
Mass (Da):11,047
Last modified:July 5, 2004 - v1
Checksum:i3117549029950A0C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81766.1.
RefSeqiYP_005393.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81766; AAS81766; TT_C1424.
GeneIDi2774973.
KEGGitth:TTC1424.
PATRICi23953265. VBITheThe54392_1418.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81766.1 .
RefSeqi YP_005393.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 P 1-101 [» ]
1VSP X-ray 3.83 P 1-101 [» ]
3D5B X-ray 3.21 V 1-101 [» ]
3D5D X-ray 3.21 V 1-101 [» ]
3F1F X-ray 3.00 V 1-101 [» ]
3F1H X-ray 3.00 V 1-101 [» ]
3MRZ X-ray 3.62 R 1-101 [» ]
3MS1 X-ray 3.62 R 1-101 [» ]
3PYO X-ray 3.50 R 1-101 [» ]
3PYR X-ray 3.50 R 1-101 [» ]
3PYT X-ray 3.40 R 1-101 [» ]
3PYV X-ray 3.40 R 1-101 [» ]
4KBU X-ray 3.86 V 1-101 [» ]
4KBW X-ray 3.86 V 1-101 [» ]
4KCZ X-ray 3.50 V 1-101 [» ]
4KD2 X-ray 3.50 V 1-101 [» ]
4KD9 X-ray 3.50 V 1-101 [» ]
4KDB X-ray 3.50 V 1-101 [» ]
4KDH X-ray 4.00 V 1-101 [» ]
4KDK X-ray 4.00 V 1-101 [» ]
4KFI X-ray 3.40 V 1-101 [» ]
4KFL X-ray 3.40 V 1-101 [» ]
4L6J X-ray 3.40 R 1-101 [» ]
4L6L X-ray 3.40 R 1-101 [» ]
ProteinModelPortali Q72HR2.
SMRi Q72HR2. Positions 1-101.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC1424.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81766 ; AAS81766 ; TT_C1424 .
GeneIDi 2774973.
KEGGi tth:TTC1424.
PATRICi 23953265. VBITheThe54392_1418.

Phylogenomic databases

eggNOGi COG0261.
KOi K02888.
OMAi YVIVEIN.
OrthoDBi EOG6TJ84X.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1442-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72HR2.

Family and domain databases

HAMAPi MF_01363. Ribosomal_L21.
InterProi IPR028909. L21p-like.
IPR001787. Ribosomal_L21.
[Graphical view ]
Pfami PF00829. Ribosomal_L21p. 1 hit.
[Graphical view ]
SUPFAMi SSF141091. SSF141091. 1 hit.
TIGRFAMsi TIGR00061. L21. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL21_THET2
AccessioniPrimary (citable) accession number: Q72HR2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: July 5, 2004
Last modified: October 1, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3