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Protein

50S ribosomal protein L9

Gene

rplI

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L9UniRule annotation
Gene namesi
Name:rplIUniRule annotation
Ordered Locus Names:TT_C1743
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002366101 – 14850S ribosomal protein L9Add BLAST148

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1743.

Structurei

Secondary structure

1148
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 5Combined sources4
Turni10 – 12Combined sources3
Beta strandi18 – 20Combined sources3
Helixi23 – 27Combined sources5
Turni28 – 34Combined sources7
Beta strandi35 – 38Combined sources4
Helixi41 – 59Combined sources19
Helixi61 – 64Combined sources4
Helixi67 – 71Combined sources5
Beta strandi72 – 74Combined sources3
Beta strandi77 – 79Combined sources3
Beta strandi83 – 90Combined sources8
Helixi95 – 103Combined sources9
Turni111 – 113Combined sources3
Beta strandi130 – 133Combined sources4
Beta strandi136 – 138Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71G1-148[»]
4V4JX-ray3.83G1-148[»]
4V5EX-ray3.45DI1-148[»]
4V63X-ray3.21BI/DI1-148[»]
4V67X-ray3.00BI/DI1-148[»]
4V7PX-ray3.62BH/CH1-148[»]
4V83X-ray3.50BH/DH1-145[»]
4V84X-ray3.40BH/DH1-145[»]
4V9NX-ray3.40BI/DI1-145[»]
4V9QX-ray3.40AI/CI1-145[»]
4XEJX-ray3.80AL09/BL091-145[»]
5J4DX-ray3.10J/OB1-148[»]
ProteinModelPortaliQ72GV5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72GV5.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L9P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K9Q. Bacteria.
COG0359. LUCA.
KOiK02939.
OMAiVDVAPGY.

Family and domain databases

Gene3Di3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPiMF_00503. Ribosomal_L9. 1 hit.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsiTIGR00158. L9. 1 hit.
PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72GV5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR
60 70 80 90 100
IRAQAKRLAE RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA
110 120 130 140
LSRQHGITID PKRLALEKPI KELGEYVLTY KPHPEVPIQL KVSVVAQE
Length:148
Mass (Da):16,411
Last modified:July 5, 2004 - v1
Checksum:iB81EF336C0506A2F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82085.1.
RefSeqiWP_011174101.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82085; AAS82085; TT_C1743.
KEGGitth:TT_C1743.
PATRICi23953953. VBITheThe54392_1742.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82085.1.
RefSeqiWP_011174101.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71G1-148[»]
4V4JX-ray3.83G1-148[»]
4V5EX-ray3.45DI1-148[»]
4V63X-ray3.21BI/DI1-148[»]
4V67X-ray3.00BI/DI1-148[»]
4V7PX-ray3.62BH/CH1-148[»]
4V83X-ray3.50BH/DH1-145[»]
4V84X-ray3.40BH/DH1-145[»]
4V9NX-ray3.40BI/DI1-145[»]
4V9QX-ray3.40AI/CI1-145[»]
4XEJX-ray3.80AL09/BL091-145[»]
5J4DX-ray3.10J/OB1-148[»]
ProteinModelPortaliQ72GV5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1743.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS82085; AAS82085; TT_C1743.
KEGGitth:TT_C1743.
PATRICi23953953. VBITheThe54392_1742.

Phylogenomic databases

eggNOGiENOG4105K9Q. Bacteria.
COG0359. LUCA.
KOiK02939.
OMAiVDVAPGY.

Miscellaneous databases

EvolutionaryTraceiQ72GV5.

Family and domain databases

Gene3Di3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPiMF_00503. Ribosomal_L9. 1 hit.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsiTIGR00158. L9. 1 hit.
PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL9_THET2
AccessioniPrimary (citable) accession number: Q72GV5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.