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Q72GV5

- RL9_THET2

UniProt

Q72GV5 - RL9_THET2

Protein

50S ribosomal protein L9

Gene

rplI

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 67 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    Binds to the 23S rRNA.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1781-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L9UniRule annotation
    Gene namesi
    Name:rplIUniRule annotation
    Ordered Locus Names:TT_C1743
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 14814850S ribosomal protein L9PRO_0000236610Add
    BLAST

    Structurei

    Secondary structure

    1
    148
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi2 – 54
    Turni10 – 123
    Beta strandi18 – 203
    Helixi23 – 275
    Turni28 – 347
    Beta strandi35 – 384
    Helixi41 – 5919
    Helixi61 – 644
    Helixi67 – 715
    Beta strandi72 – 743
    Beta strandi77 – 793
    Beta strandi83 – 908
    Helixi95 – 1039
    Turni111 – 1133
    Beta strandi130 – 1334
    Beta strandi136 – 1383

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71G1-148[»]
    1VSPX-ray3.83G1-148[»]
    3D5BX-ray3.21I1-148[»]
    3D5DX-ray3.21I1-148[»]
    3MRZX-ray3.62H1-148[»]
    3MS1X-ray3.62H1-148[»]
    3PYOX-ray3.50H1-145[»]
    3PYRX-ray3.50H1-145[»]
    3PYTX-ray3.40H1-145[»]
    3PYVX-ray3.40H1-145[»]
    4KFIX-ray3.40I1-145[»]
    4KFLX-ray3.40I1-145[»]
    4L6JX-ray3.40I1-145[»]
    4L6LX-ray3.40I1-145[»]
    ProteinModelPortaliQ72GV5.
    SMRiQ72GV5. Positions 1-148.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72GV5.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L9P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0359.
    KOiK02939.
    OMAiSNKHNID.
    OrthoDBiEOG6D8BH0.

    Family and domain databases

    Gene3Di3.10.430.100. 1 hit.
    3.40.5.10. 1 hit.
    HAMAPiMF_00503. Ribosomal_L9.
    InterProiIPR000244. Ribosomal_L9.
    IPR009027. Ribosomal_L9/RNase_H1_N.
    IPR020594. Ribosomal_L9_bac/chp.
    IPR020069. Ribosomal_L9_C.
    IPR020070. Ribosomal_L9_N.
    [Graphical view]
    PANTHERiPTHR21368. PTHR21368. 1 hit.
    PfamiPF03948. Ribosomal_L9_C. 1 hit.
    PF01281. Ribosomal_L9_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF55653. SSF55653. 1 hit.
    SSF55658. SSF55658. 1 hit.
    TIGRFAMsiTIGR00158. L9. 1 hit.
    PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q72GV5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR    50
    IRAQAKRLAE RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA 100
    LSRQHGITID PKRLALEKPI KELGEYVLTY KPHPEVPIQL KVSVVAQE 148
    Length:148
    Mass (Da):16,411
    Last modified:July 5, 2004 - v1
    Checksum:iB81EF336C0506A2F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS82085.1.
    RefSeqiWP_011174101.1. NC_005835.1.
    YP_005712.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS82085; AAS82085; TT_C1743.
    GeneIDi2775355.
    KEGGitth:TTC1743.
    PATRICi23953953. VBITheThe54392_1742.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS82085.1 .
    RefSeqi WP_011174101.1. NC_005835.1.
    YP_005712.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 G 1-148 [» ]
    1VSP X-ray 3.83 G 1-148 [» ]
    3D5B X-ray 3.21 I 1-148 [» ]
    3D5D X-ray 3.21 I 1-148 [» ]
    3MRZ X-ray 3.62 H 1-148 [» ]
    3MS1 X-ray 3.62 H 1-148 [» ]
    3PYO X-ray 3.50 H 1-145 [» ]
    3PYR X-ray 3.50 H 1-145 [» ]
    3PYT X-ray 3.40 H 1-145 [» ]
    3PYV X-ray 3.40 H 1-145 [» ]
    4KFI X-ray 3.40 I 1-145 [» ]
    4KFL X-ray 3.40 I 1-145 [» ]
    4L6J X-ray 3.40 I 1-145 [» ]
    4L6L X-ray 3.40 I 1-145 [» ]
    ProteinModelPortali Q72GV5.
    SMRi Q72GV5. Positions 1-148.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS82085 ; AAS82085 ; TT_C1743 .
    GeneIDi 2775355.
    KEGGi tth:TTC1743.
    PATRICi 23953953. VBITheThe54392_1742.

    Phylogenomic databases

    eggNOGi COG0359.
    KOi K02939.
    OMAi SNKHNID.
    OrthoDBi EOG6D8BH0.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1781-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72GV5.

    Family and domain databases

    Gene3Di 3.10.430.100. 1 hit.
    3.40.5.10. 1 hit.
    HAMAPi MF_00503. Ribosomal_L9.
    InterProi IPR000244. Ribosomal_L9.
    IPR009027. Ribosomal_L9/RNase_H1_N.
    IPR020594. Ribosomal_L9_bac/chp.
    IPR020069. Ribosomal_L9_C.
    IPR020070. Ribosomal_L9_N.
    [Graphical view ]
    PANTHERi PTHR21368. PTHR21368. 1 hit.
    Pfami PF03948. Ribosomal_L9_C. 1 hit.
    PF01281. Ribosomal_L9_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55653. SSF55653. 1 hit.
    SSF55658. SSF55658. 1 hit.
    TIGRFAMsi TIGR00158. L9. 1 hit.
    PROSITEi PS00651. RIBOSOMAL_L9. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL9_THET2
    AccessioniPrimary (citable) accession number: Q72GV5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2006
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 67 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3