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Protein

50S ribosomal protein L9

Gene

rplI

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1781-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L9UniRule annotation
Gene namesi
Name:rplIUniRule annotation
Ordered Locus Names:TT_C1743
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14814850S ribosomal protein L9PRO_0000236610Add
BLAST

Structurei

Secondary structure

1
148
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 54Combined sources
Turni10 – 123Combined sources
Beta strandi18 – 203Combined sources
Helixi23 – 275Combined sources
Turni28 – 347Combined sources
Beta strandi35 – 384Combined sources
Helixi41 – 5919Combined sources
Helixi61 – 644Combined sources
Helixi67 – 715Combined sources
Beta strandi72 – 743Combined sources
Beta strandi77 – 793Combined sources
Beta strandi83 – 908Combined sources
Helixi95 – 1039Combined sources
Turni111 – 1133Combined sources
Beta strandi130 – 1334Combined sources
Beta strandi136 – 1383Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4L6JX-ray3.40I1-145[»]
4L6LX-ray3.40I1-145[»]
4V4IX-ray3.71G1-148[»]
4V4JX-ray3.83G1-148[»]
4V63X-ray3.21I1-148[»]
4V7PX-ray3.62H1-148[»]
4V83X-ray3.50H1-145[»]
4V84X-ray3.40H1-145[»]
4V9NX-ray3.40I1-145[»]
ProteinModelPortaliQ72GV5.
SMRiQ72GV5. Positions 1-148.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72GV5.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L9P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0359.
KOiK02939.
OMAiVDVAPGY.
OrthoDBiEOG6D8BH0.

Family and domain databases

Gene3Di3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPiMF_00503. Ribosomal_L9.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsiTIGR00158. L9. 1 hit.
PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q72GV5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR
60 70 80 90 100
IRAQAKRLAE RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA
110 120 130 140
LSRQHGITID PKRLALEKPI KELGEYVLTY KPHPEVPIQL KVSVVAQE
Length:148
Mass (Da):16,411
Last modified:July 5, 2004 - v1
Checksum:iB81EF336C0506A2F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82085.1.
RefSeqiWP_011174101.1. NC_005835.1.
YP_005712.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82085; AAS82085; TT_C1743.
GeneIDi2775355.
KEGGitth:TTC1743.
PATRICi23953953. VBITheThe54392_1742.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82085.1.
RefSeqiWP_011174101.1. NC_005835.1.
YP_005712.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4L6JX-ray3.40I1-145[»]
4L6LX-ray3.40I1-145[»]
4V4IX-ray3.71G1-148[»]
4V4JX-ray3.83G1-148[»]
4V63X-ray3.21I1-148[»]
4V7PX-ray3.62H1-148[»]
4V83X-ray3.50H1-145[»]
4V84X-ray3.40H1-145[»]
4V9NX-ray3.40I1-145[»]
ProteinModelPortaliQ72GV5.
SMRiQ72GV5. Positions 1-148.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS82085; AAS82085; TT_C1743.
GeneIDi2775355.
KEGGitth:TTC1743.
PATRICi23953953. VBITheThe54392_1742.

Phylogenomic databases

eggNOGiCOG0359.
KOiK02939.
OMAiVDVAPGY.
OrthoDBiEOG6D8BH0.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1781-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72GV5.

Family and domain databases

Gene3Di3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPiMF_00503. Ribosomal_L9.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsiTIGR00158. L9. 1 hit.
PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL9_THET2
AccessioniPrimary (citable) accession number: Q72GV5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: July 5, 2004
Last modified: February 4, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.