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Protein

50S ribosomal protein L28

Gene

rpmB

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-2008-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L28UniRule annotation
Gene namesi
Name:rpmBUniRule annotation
Ordered Locus Names:TT_C1964
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 989850S ribosomal protein L28PRO_1000121704Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1964.

Structurei

Secondary structure

1
98
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni6 – 83Combined sources
Turni10 – 134Combined sources
Beta strandi15 – 184Combined sources
Beta strandi19 – 213Combined sources
Beta strandi29 – 313Combined sources
Beta strandi32 – 343Combined sources
Beta strandi39 – 413Combined sources
Beta strandi46 – 505Combined sources
Beta strandi53 – 564Combined sources
Beta strandi59 – 646Combined sources
Helixi67 – 7812Combined sources
Helixi87 – 937Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71V1-98[»]
4V4JX-ray3.83V1-98[»]
4V63X-ray3.21B1/D11-98[»]
4V67X-ray3.00B1/D11-98[»]
4V7PX-ray3.62BX/CX1-98[»]
4V83X-ray3.50BX/DX8-95[»]
4V84X-ray3.40BX/DX8-95[»]
4V9JX-ray3.86B1/D13-95[»]
4V9KX-ray3.50B1/D13-95[»]
4V9LX-ray3.50B1/D13-95[»]
4V9MX-ray4.00B1/D13-95[»]
4V9NX-ray3.40B1/D18-95[»]
4V9QX-ray3.40AX/CX8-95[»]
4W29X-ray3.80B1/D13-95[»]
4XEJX-ray3.80AL28/BL288-95[»]
ProteinModelPortaliQ72G84.
SMRiQ72G84. Positions 8-95.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72G84.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L28P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0227.
KOiK02902.
OMAiVANSHAH.
OrthoDBiEOG6W727M.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28.
InterProiIPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72G84-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR
60 70 80 90
VRVAGQEITF RVAASHIPKV YELVERAKGL RLEGLSPKEI KKELLKLL
Length:98
Mass (Da):11,006
Last modified:July 5, 2004 - v1
Checksum:i0FD34D311DB6C379
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82306.1.
RefSeqiWP_011174314.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82306; AAS82306; TT_C1964.
KEGGitth:TTC1964.
PATRICi23954397. VBITheThe54392_1958.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82306.1.
RefSeqiWP_011174314.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71V1-98[»]
4V4JX-ray3.83V1-98[»]
4V63X-ray3.21B1/D11-98[»]
4V67X-ray3.00B1/D11-98[»]
4V7PX-ray3.62BX/CX1-98[»]
4V83X-ray3.50BX/DX8-95[»]
4V84X-ray3.40BX/DX8-95[»]
4V9JX-ray3.86B1/D13-95[»]
4V9KX-ray3.50B1/D13-95[»]
4V9LX-ray3.50B1/D13-95[»]
4V9MX-ray4.00B1/D13-95[»]
4V9NX-ray3.40B1/D18-95[»]
4V9QX-ray3.40AX/CX8-95[»]
4W29X-ray3.80B1/D13-95[»]
4XEJX-ray3.80AL28/BL288-95[»]
ProteinModelPortaliQ72G84.
SMRiQ72G84. Positions 8-95.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1964.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS82306; AAS82306; TT_C1964.
KEGGitth:TTC1964.
PATRICi23954397. VBITheThe54392_1958.

Phylogenomic databases

eggNOGiCOG0227.
KOiK02902.
OMAiVANSHAH.
OrthoDBiEOG6W727M.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-2008-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72G84.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28.
InterProiIPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL28_THET2
AccessioniPrimary (citable) accession number: Q72G84
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: July 5, 2004
Last modified: July 22, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.