50S ribosomal protein L28 - Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)

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Q72G84 (RL28_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 46. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L28

Gene names

Name:	rpmB
Ordered Locus Names:	TT_C1964

Organism

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	98 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L28P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

98

50S ribosomal protein L28 HAMAP-Rule MF_00373

PRO_1000121704

Secondary structure

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98

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

Q72G84 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 0FD34D311DB6C379
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98

11,006

        10         20         30         40         50         60 
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR VRVAGQEITF 

        70         80         90 
RVAASHIPKV YELVERAKGL RLEGLSPKEI KKELLKLL

References

[1]

"The genome sequence of the extreme thermophile Thermus thermophilus."
Henne A., Brueggemann H., Raasch C., Wiezer A., Hartsch T., Liesegang H., Johann A., Lienard T., Gohl O., Martinez-Arias R., Jacobi C., Starkuviene V., Schlenczeck S., Dencker S., Huber R., Klenk H.-P., Kramer W., Merkl R., Gottschalk G., Fritz H.-J.
Nat. Biotechnol. 22:547-553(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB27 / ATCC BAA-163 / DSM 7039.

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Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE017221 Genomic DNA. Translation: AAS82306.1.

RefSeq

YP_005933.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1VSA	X-ray	3.71	V	1-98	[»]
1VSP	X-ray	3.83	V	1-98	[»]
3D5B	X-ray	3.21	1	1-98	[»]
3D5D	X-ray	3.21	1	1-98	[»]
3F1F	X-ray	3.00	1	1-98	[»]
3F1H	X-ray	3.00	1	1-98	[»]
3MRZ	X-ray	3.62	X	1-98	[»]
3MS1	X-ray	3.62	X	1-98	[»]
3PYO	X-ray	3.50	X	8-95	[»]
3PYR	X-ray	3.50	X	8-95	[»]
3PYT	X-ray	3.40	X	8-95	[»]
3PYV	X-ray	3.40	X	8-95	[»]

ProteinModelPortal

SMR

Q72G84. Positions 8-95.

ModBase

Protein-protein interaction databases

STRING

262724.TTC1964.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AAS82306; AAS82306; TT_C1964.

GeneID

KEGG

PATRIC

23954397. VBITheThe54392_1958.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

KO

OMA

ProtClustDB

Family and domain databases

HAMAP

MF_00373. Ribosomal_L28.

InterPro

IPR001383. Ribosomal_L28.
[Graphical view]

Pfam

PF00830. Ribosomal_L28. 1 hit.
[Graphical view]

TIGRFAMs

TIGR00009. L28. 1 hit.

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

RL28_THET2

Accession

Primary (citable) accession number: Q72G84

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	July 5, 2004
Last modified:	May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents