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Q72G84

- RL28_THET2

UniProt

Q72G84 - RL28_THET2

Protein

50S ribosomal protein L28

Gene

rpmB

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-2008-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L28UniRule annotation
    Gene namesi
    Name:rpmBUniRule annotation
    Ordered Locus Names:TT_C1964
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 989850S ribosomal protein L28PRO_1000121704Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi262724.TTC1964.

    Structurei

    Secondary structure

    1
    98
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Turni6 – 83
    Turni10 – 134
    Beta strandi15 – 184
    Beta strandi19 – 213
    Beta strandi29 – 313
    Beta strandi32 – 343
    Beta strandi39 – 413
    Beta strandi46 – 505
    Beta strandi53 – 564
    Beta strandi59 – 646
    Helixi67 – 7812
    Helixi87 – 937

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VSAX-ray3.71V1-98[»]
    1VSPX-ray3.83V1-98[»]
    3D5BX-ray3.2111-98[»]
    3D5DX-ray3.2111-98[»]
    3F1FX-ray3.0011-98[»]
    3F1HX-ray3.0011-98[»]
    3MRZX-ray3.62X1-98[»]
    3MS1X-ray3.62X1-98[»]
    3PYOX-ray3.50X8-95[»]
    3PYRX-ray3.50X8-95[»]
    3PYTX-ray3.40X8-95[»]
    3PYVX-ray3.40X8-95[»]
    4KBUX-ray3.8613-95[»]
    4KBWX-ray3.8613-95[»]
    4KCZX-ray3.5013-95[»]
    4KD2X-ray3.5013-95[»]
    4KD9X-ray3.5013-95[»]
    4KDBX-ray3.5013-95[»]
    4KDHX-ray4.0013-95[»]
    4KDKX-ray4.0013-95[»]
    4KFIX-ray3.4018-95[»]
    4KFLX-ray3.4018-95[»]
    4L6JX-ray3.40X8-95[»]
    4L6LX-ray3.40X8-95[»]
    ProteinModelPortaliQ72G84.
    SMRiQ72G84. Positions 8-95.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ72G84.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L28P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0227.
    KOiK02902.
    OMAiWINHIEV.
    OrthoDBiEOG6W727M.

    Family and domain databases

    HAMAPiMF_00373. Ribosomal_L28.
    InterProiIPR001383. Ribosomal_L28.
    [Graphical view]
    PfamiPF00830. Ribosomal_L28. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00009. L28. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q72G84-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR   50
    VRVAGQEITF RVAASHIPKV YELVERAKGL RLEGLSPKEI KKELLKLL 98
    Length:98
    Mass (Da):11,006
    Last modified:July 5, 2004 - v1
    Checksum:i0FD34D311DB6C379
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS82306.1.
    RefSeqiWP_011174314.1. NC_005835.1.
    YP_005933.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS82306; AAS82306; TT_C1964.
    GeneIDi2775268.
    KEGGitth:TTC1964.
    PATRICi23954397. VBITheThe54392_1958.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS82306.1 .
    RefSeqi WP_011174314.1. NC_005835.1.
    YP_005933.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VSA X-ray 3.71 V 1-98 [» ]
    1VSP X-ray 3.83 V 1-98 [» ]
    3D5B X-ray 3.21 1 1-98 [» ]
    3D5D X-ray 3.21 1 1-98 [» ]
    3F1F X-ray 3.00 1 1-98 [» ]
    3F1H X-ray 3.00 1 1-98 [» ]
    3MRZ X-ray 3.62 X 1-98 [» ]
    3MS1 X-ray 3.62 X 1-98 [» ]
    3PYO X-ray 3.50 X 8-95 [» ]
    3PYR X-ray 3.50 X 8-95 [» ]
    3PYT X-ray 3.40 X 8-95 [» ]
    3PYV X-ray 3.40 X 8-95 [» ]
    4KBU X-ray 3.86 1 3-95 [» ]
    4KBW X-ray 3.86 1 3-95 [» ]
    4KCZ X-ray 3.50 1 3-95 [» ]
    4KD2 X-ray 3.50 1 3-95 [» ]
    4KD9 X-ray 3.50 1 3-95 [» ]
    4KDB X-ray 3.50 1 3-95 [» ]
    4KDH X-ray 4.00 1 3-95 [» ]
    4KDK X-ray 4.00 1 3-95 [» ]
    4KFI X-ray 3.40 1 8-95 [» ]
    4KFL X-ray 3.40 1 8-95 [» ]
    4L6J X-ray 3.40 X 8-95 [» ]
    4L6L X-ray 3.40 X 8-95 [» ]
    ProteinModelPortali Q72G84.
    SMRi Q72G84. Positions 8-95.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1964.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS82306 ; AAS82306 ; TT_C1964 .
    GeneIDi 2775268.
    KEGGi tth:TTC1964.
    PATRICi 23954397. VBITheThe54392_1958.

    Phylogenomic databases

    eggNOGi COG0227.
    KOi K02902.
    OMAi WINHIEV.
    OrthoDBi EOG6W727M.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-2008-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q72G84.

    Family and domain databases

    HAMAPi MF_00373. Ribosomal_L28.
    InterProi IPR001383. Ribosomal_L28.
    [Graphical view ]
    Pfami PF00830. Ribosomal_L28. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00009. L28. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRL28_THET2
    AccessioniPrimary (citable) accession number: Q72G84
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3