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Q72G84

- RL28_THET2

UniProt

Q72G84 - RL28_THET2

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Protein

50S ribosomal protein L28

Gene
rpmB, TT_C1964
Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-2008-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L28
Gene namesi
Name:rpmB
Ordered Locus Names:TT_C1964
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 989850S ribosomal protein L28UniRule annotationPRO_1000121704Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1964.

Structurei

Secondary structure

1
98
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni6 – 83
Turni10 – 134
Beta strandi15 – 184
Beta strandi19 – 213
Beta strandi29 – 313
Beta strandi32 – 343
Beta strandi39 – 413
Beta strandi46 – 505
Beta strandi53 – 564
Beta strandi59 – 646
Helixi67 – 7812
Helixi87 – 937

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71V1-98[»]
1VSPX-ray3.83V1-98[»]
3D5BX-ray3.2111-98[»]
3D5DX-ray3.2111-98[»]
3F1FX-ray3.0011-98[»]
3F1HX-ray3.0011-98[»]
3MRZX-ray3.62X1-98[»]
3MS1X-ray3.62X1-98[»]
3PYOX-ray3.50X8-95[»]
3PYRX-ray3.50X8-95[»]
3PYTX-ray3.40X8-95[»]
3PYVX-ray3.40X8-95[»]
4KBUX-ray3.8613-95[»]
4KBWX-ray3.8613-95[»]
4KCZX-ray3.5013-95[»]
4KD2X-ray3.5013-95[»]
4KD9X-ray3.5013-95[»]
4KDBX-ray3.5013-95[»]
4KDHX-ray4.0013-95[»]
4KDKX-ray4.0013-95[»]
4KFIX-ray3.4018-95[»]
4KFLX-ray3.4018-95[»]
4L6JX-ray3.40X8-95[»]
4L6LX-ray3.40X8-95[»]
ProteinModelPortaliQ72G84.
SMRiQ72G84. Positions 8-95.

Miscellaneous databases

EvolutionaryTraceiQ72G84.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0227.
KOiK02902.
OMAiWINHIEV.
OrthoDBiEOG6W727M.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28.
InterProiIPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72G84-1 [UniParc]FASTAAdd to Basket

« Hide

MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR   50
VRVAGQEITF RVAASHIPKV YELVERAKGL RLEGLSPKEI KKELLKLL 98
Length:98
Mass (Da):11,006
Last modified:July 5, 2004 - v1
Checksum:i0FD34D311DB6C379
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS82306.1.
RefSeqiWP_011174314.1. NC_005835.1.
YP_005933.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82306; AAS82306; TT_C1964.
GeneIDi2775268.
KEGGitth:TTC1964.
PATRICi23954397. VBITheThe54392_1958.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS82306.1 .
RefSeqi WP_011174314.1. NC_005835.1.
YP_005933.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 V 1-98 [» ]
1VSP X-ray 3.83 V 1-98 [» ]
3D5B X-ray 3.21 1 1-98 [» ]
3D5D X-ray 3.21 1 1-98 [» ]
3F1F X-ray 3.00 1 1-98 [» ]
3F1H X-ray 3.00 1 1-98 [» ]
3MRZ X-ray 3.62 X 1-98 [» ]
3MS1 X-ray 3.62 X 1-98 [» ]
3PYO X-ray 3.50 X 8-95 [» ]
3PYR X-ray 3.50 X 8-95 [» ]
3PYT X-ray 3.40 X 8-95 [» ]
3PYV X-ray 3.40 X 8-95 [» ]
4KBU X-ray 3.86 1 3-95 [» ]
4KBW X-ray 3.86 1 3-95 [» ]
4KCZ X-ray 3.50 1 3-95 [» ]
4KD2 X-ray 3.50 1 3-95 [» ]
4KD9 X-ray 3.50 1 3-95 [» ]
4KDB X-ray 3.50 1 3-95 [» ]
4KDH X-ray 4.00 1 3-95 [» ]
4KDK X-ray 4.00 1 3-95 [» ]
4KFI X-ray 3.40 1 8-95 [» ]
4KFL X-ray 3.40 1 8-95 [» ]
4L6J X-ray 3.40 X 8-95 [» ]
4L6L X-ray 3.40 X 8-95 [» ]
ProteinModelPortali Q72G84.
SMRi Q72G84. Positions 8-95.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC1964.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS82306 ; AAS82306 ; TT_C1964 .
GeneIDi 2775268.
KEGGi tth:TTC1964.
PATRICi 23954397. VBITheThe54392_1958.

Phylogenomic databases

eggNOGi COG0227.
KOi K02902.
OMAi WINHIEV.
OrthoDBi EOG6W727M.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-2008-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q72G84.

Family and domain databases

HAMAPi MF_00373. Ribosomal_L28.
InterProi IPR001383. Ribosomal_L28.
[Graphical view ]
Pfami PF00830. Ribosomal_L28. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00009. L28. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL28_THET2
AccessioniPrimary (citable) accession number: Q72G84
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: July 5, 2004
Last modified: September 3, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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