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Protein

50S ribosomal protein L28

Gene

rpmB

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-2008-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L28UniRule annotation
Gene namesi
Name:rpmBUniRule annotation
Ordered Locus Names:TT_C1964
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 989850S ribosomal protein L28PRO_1000121704Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1964.

Structurei

Secondary structure

1
98
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni6 – 83Combined sources
Turni10 – 134Combined sources
Beta strandi15 – 184Combined sources
Beta strandi19 – 213Combined sources
Beta strandi29 – 313Combined sources
Beta strandi32 – 343Combined sources
Beta strandi39 – 413Combined sources
Beta strandi46 – 505Combined sources
Beta strandi53 – 564Combined sources
Beta strandi59 – 646Combined sources
Helixi67 – 7812Combined sources
Helixi87 – 937Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71V1-98[»]
4V4JX-ray3.83V1-98[»]
4V63X-ray3.21B1/D11-98[»]
4V67X-ray3.00B1/D11-98[»]
4V7PX-ray3.62BX/CX1-98[»]
4V83X-ray3.50BX/DX8-95[»]
4V84X-ray3.40BX/DX8-95[»]
4V9JX-ray3.86B1/D13-95[»]
4V9KX-ray3.50B1/D13-95[»]
4V9LX-ray3.50B1/D13-95[»]
4V9MX-ray4.00B1/D13-95[»]
4V9NX-ray3.40B1/D18-95[»]
4V9QX-ray3.40AX/CX8-95[»]
4W29X-ray3.80B1/D13-95[»]
4XEJX-ray3.80AL28/BL288-95[»]
5J4DX-ray3.10DC/Y1-98[»]
ProteinModelPortaliQ72G84.
SMRiQ72G84. Positions 8-95.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ72G84.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L28P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4106633. Bacteria.
COG0227. LUCA.
KOiK02902.
OMAiICEISGK.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28. 1 hit.
InterProiIPR026569. Ribo_L28/L24.
IPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.

Sequencei

Sequence statusi: Complete.

Q72G84-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR
60 70 80 90
VRVAGQEITF RVAASHIPKV YELVERAKGL RLEGLSPKEI KKELLKLL
Length:98
Mass (Da):11,006
Last modified:July 5, 2004 - v1
Checksum:i0FD34D311DB6C379
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82306.1.
RefSeqiWP_011174314.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82306; AAS82306; TT_C1964.
KEGGitth:TTC1964.
PATRICi23954397. VBITheThe54392_1958.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82306.1.
RefSeqiWP_011174314.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71V1-98[»]
4V4JX-ray3.83V1-98[»]
4V63X-ray3.21B1/D11-98[»]
4V67X-ray3.00B1/D11-98[»]
4V7PX-ray3.62BX/CX1-98[»]
4V83X-ray3.50BX/DX8-95[»]
4V84X-ray3.40BX/DX8-95[»]
4V9JX-ray3.86B1/D13-95[»]
4V9KX-ray3.50B1/D13-95[»]
4V9LX-ray3.50B1/D13-95[»]
4V9MX-ray4.00B1/D13-95[»]
4V9NX-ray3.40B1/D18-95[»]
4V9QX-ray3.40AX/CX8-95[»]
4W29X-ray3.80B1/D13-95[»]
4XEJX-ray3.80AL28/BL288-95[»]
5J4DX-ray3.10DC/Y1-98[»]
ProteinModelPortaliQ72G84.
SMRiQ72G84. Positions 8-95.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1964.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS82306; AAS82306; TT_C1964.
KEGGitth:TTC1964.
PATRICi23954397. VBITheThe54392_1958.

Phylogenomic databases

eggNOGiENOG4106633. Bacteria.
COG0227. LUCA.
KOiK02902.
OMAiICEISGK.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-2008-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ72G84.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28. 1 hit.
InterProiIPR026569. Ribo_L28/L24.
IPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL28_THET2
AccessioniPrimary (citable) accession number: Q72G84
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: July 5, 2004
Last modified: September 7, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.