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Reviewed, UniProtKB/Swiss-Prot Q72AU2 (SYGA_DESVH)

Last modified February 9, 2010. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Glycyl-tRNA synthetase alpha subunit
    EC=6.1.1.14
Alternative name(s):
    Glycine--tRNA ligase alpha subunit
      Short name=GlyRS
Gene names
Name: glyQ
Ordered Locus Names: DVU_1898
OrganismDesulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) [Complete proteome] [HAMAP]
Taxonomic identifier882 [NCBI]
Taxonomic lineageBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio

Protein attributes

Sequence length289 AA.
Sequence statusComplete.
Protein existenceInferred from homology.

General annotation (Comments)

Catalytic activity

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). HAMAP MF_00254

Subunit structure

Tetramer of two alpha and two beta subunits By similarity. HAMAP MF_00254

Subcellular location

Cytoplasm HAMAP MF_00254.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processglycyl-tRNA aminoacylation

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionATP binding

Inferred from electronic annotation. Source: HAMAP

glycine-tRNA ligase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 289289Glycyl-tRNA synthetase alpha subunit HAMAP MF_00254
PRO_1000047416

Sequences

Sequence LengthMass (Da)Tools
Q72AU2-1 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 499DA7F4AFF0D20D

FASTA28933,236
        10         20         30         40         50         60 
MHFQNVILTL QNYWASRGCV ITQPIDVECG AGTFNPSTFL RVIGPEPWNV AYVEPSRRPT 

        70         80         90        100        110        120 
DGRYGENPNR LQHYFQFQVI LKPSPDNVQE LYLGSLRALG IDPAAHDIRF VEDDWESPTL 

       130        140        150        160        170        180 
GAWGLGWEVW LNGMEVTQFT YFQQVGGIDL APTSVEITYG LERLCMYLQG KESVYDLDWN 

       190        200        210        220        230        240 
EHVTYGDIYH QNEVEQSKYN FERSDAAMLL HAFNAYETEC RRLTEEGLLW PAYDYCLKCS 

       250        260        270        280 
HTFNLLDARG AISITERTGY IGRVRYLASG VARLYAAQRE QLGYPMLRK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017285 Genomic DNA. Translation: AAS96374.1.
RefSeqYP_011115.1.

3D structure databases

HSSPHSSP built from PDB template 1J5W based on UniProtKB Q9WY59.
SMRQ72AU2. Positions 1-275.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ72AU2.

Genome annotation databases

GeneID2794709.
GenomeReviewsGene locus DVU_1898 in contig AE017285_GR.
KEGGdvu:DVU1898.
TIGRDVU_1898.

Phylogenomic databases

eggNOGCOG0752.
HOGENOMHBG285316.
OMACRRPTDG.
PhylomeDBQ72AU2.

Enzyme and pathway databases

BioCycDVUL882:DVU_1898-MONOMER.

Family and domain databases

HAMAPMF_00254. Gly_tRNA_synth_alpha.
[Tree]
InterProIPR006194. Gly-tRNA-synth_II_heterodimer.
IPR002310. Gly-tRNA_synth_IIc_asu.
[Graphical view]
PfamPF02091. tRNA-synt_2e. 1 hit.
[Graphical view]
PRINTSPR01044. TRNASYNTHGA.
TIGRFAMsTIGR00388. glyQ. 1 hit.
PROSITEPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYGA_DESVH
AccessionPrimary (citable) accession number: Q72AU2
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 5, 2004
Last modified: February 9, 2010
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents