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Protein
Submitted name:

Putative receptor binding protein

Gene

rbp

Organism
Lactococcus lactis phage p2
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative receptor binding proteinImported
Submitted name:
Receptor binding proteinImported
Gene namesi
Name:rbpImported
OrganismiLactococcus lactis phage p2Imported
Taxonomic identifieri100641 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageCaudoviralesSiphoviridae
Proteomesi
  • UP000002348 Componenti: Genome

Interactioni

Protein-protein interaction databases

DIPiDIP-59525N.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZRUX-ray1.73A/B/C1-264[»]
2BSDX-ray2.30A/B/C1-264[»]
2BSEX-ray2.70A/B/C1-264[»]
2WZPX-ray2.60A/B/C/G/H/I2-264[»]
2X53X-ray3.90A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R2-264[»]
3DA0X-ray1.65A/B/C163-264[»]
4V5IX-ray5.46AA/AB/AC/AD/AE/AF/AG/AH/AI/AJ/AK/AL/AM/AN/AO/AP/AQ/AR/BA/BB/BC/BD/BE/BF/BG/BH/BI/BJ/BK/BL2-264[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 264264Caudo_bapla_RBPInterPro annotationAdd
BLAST

Family and domain databases

InterProiIPR008982. Adenovirus_pIV-rel_att.
IPR015027. Caudo_bapla_RBP.
[Graphical view]
PfamiPF08931. Caudo_bapla_RBP. 1 hit.
[Graphical view]
SUPFAMiSSF49835. SSF49835. 1 hit.

Sequencei

Sequence statusi: Complete.

Q71AW2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIKNFTFFS PNSTEFPVGS NNDGKLYMML TGMDYRTIRR KDWSSPLNTA
60 70 80 90 100
LNVQYTNTSI IAGGRYFELL NETVALKGDS VNYIHANIDL TQTANPVSLS
110 120 130 140 150
AETANNSNGV DINNGSGVLK VCFDIVTTSG TGVTSTKPIV QTSTLDSISV
160 170 180 190 200
NDMTVSGSID VPVQTLTVEA GNGLQLQLTK KNNDLVIVRF FGSVSNIQKG
210 220 230 240 250
WNMSGTWVDR PFRPAAVQSL VGHFAGRDTS FHIDINPNGS ITWWGANIDK
260
TPIATRGNGS YFIK
Length:264
Mass (Da):28,645
Last modified:July 5, 2004 - v1
Checksum:i6D2F7356D7C34853
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF539441 Genomic DNA. Translation: AAQ10938.1.
GQ979703 Genomic DNA. Translation: AAT81478.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF539441 Genomic DNA. Translation: AAQ10938.1.
GQ979703 Genomic DNA. Translation: AAT81478.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZRUX-ray1.73A/B/C1-264[»]
2BSDX-ray2.30A/B/C1-264[»]
2BSEX-ray2.70A/B/C1-264[»]
2WZPX-ray2.60A/B/C/G/H/I2-264[»]
2X53X-ray3.90A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R2-264[»]
3DA0X-ray1.65A/B/C163-264[»]
4V5IX-ray5.46AA/AB/AC/AD/AE/AF/AG/AH/AI/AJ/AK/AL/AM/AN/AO/AP/AQ/AR/BA/BB/BC/BD/BE/BF/BG/BH/BI/BJ/BK/BL2-264[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-59525N.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR008982. Adenovirus_pIV-rel_att.
IPR015027. Caudo_bapla_RBP.
[Graphical view]
PfamiPF08931. Caudo_bapla_RBP. 1 hit.
[Graphical view]
SUPFAMiSSF49835. SSF49835. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Bouchard J.D., Moineau S.
    Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: P2Imported.
  2. "Identification of the receptor-binding protein in 936-species lactococcal bacteriophages."
    Dupont K., Vogensen F.K., Neve H., Bresciani J., Josephsen J.
    Appl. Environ. Microbiol. 70:5818-5824(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Lactococcal phage genes involved in sensitivity to AbiK and their relation to single-strand annealing proteins."
    Bouchard J.D., Moineau S.
    J. Bacteriol. 186:3649-3652(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: P2Imported.
  4. "Detection of lactococcal 936-species bacteriophages in whey by magnetic capture hybridization PCR targeting a variable region of receptor-binding protein genes."
    Dupont K., Vogensen F.K., Josephsen J.
    J. Appl. Microbiol. 98:1001-1009(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  5. "Receptor-binding protein of Lactococcus lactis phages: identification and characterization of the saccharide receptor-binding site."
    Tremblay D.M., Tegoni M., Spinelli S., Campanacci V., Blangy S., Huyghe C., Desmyter A., Labrie S., Moineau S., Cambillau C.
    J. Bacteriol. 188:2400-2410(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.73 ANGSTROMS).
    Strain: P2Imported.
  6. "Lactococcal bacteriophage p2 receptor-binding protein structure suggests a common ancestor gene with bacterial and mammalian viruses."
    Spinelli S., Desmyter A., Verrips C.T., de Haard H.J., Moineau S., Cambillau C.
    Nat. Struct. Mol. Biol. 13:85-89(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).
  7. "Identification and characterization of the phage gene sav, involved in sensitivity to the lactococcal abortive infection mechanism AbiV."
    Haaber J., Rousseau G.M., Hammer K., Moineau S.
    Appl. Environ. Microbiol. 75:2484-2494(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: P2Imported.
  8. "Crystal structure of a chimeric receptor binding protein constructed from two lactococcal phages."
    Siponen M., Spinelli S., Blangy S., Moineau S., Cambillau C., Campanacci V.
    J. Bacteriol. 191:3220-3225(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 163-264.
  9. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: P2Imported.
  10. Tremblay D.M., Deveau H., Moineau S.
    Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: P2Imported.
  11. Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 2-264.
  12. "Complete genomic sequence of Lactococcus lactis phage p2."
    Tremblay D.M., Deveau H., Moineau S.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: P2Imported.

Entry informationi

Entry nameiQ71AW2_9CAUD
AccessioniPrimary (citable) accession number: Q71AW2
Secondary accession number(s): Q1RNF7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: April 13, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.