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Q709C8

- VP13C_HUMAN

UniProt

Q709C8 - VP13C_HUMAN

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Protein

Vacuolar protein sorting-associated protein 13C

Gene

VPS13C

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Vacuolar protein sorting-associated protein 13C
Gene namesi
Name:VPS13CImported
Synonyms:KIAA1421Imported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 15

Organism-specific databases

HGNCiHGNC:23594. VPS13C.

Subcellular locationi

GO - Cellular componenti

  1. extracellular vesicular exosome Source: UniProt
Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134990089.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 37533753Vacuolar protein sorting-associated protein 13CPRO_0000262949Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei614 – 6141Phosphothreonine1 Publication
Modified residuei619 – 6191Phosphoserine1 Publication
Modified residuei624 – 6241Phosphothreonine1 Publication
Modified residuei737 – 7371Phosphoserine1 Publication
Modified residuei1979 – 19791PhosphoserineBy similarity
Cross-linki2357 – 2357Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)1 Publication
Modified residuei3538 – 35381N6-acetyllysine1 Publication

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

MaxQBiQ709C8.
PaxDbiQ709C8.
PRIDEiQ709C8.

PTM databases

PhosphoSiteiQ709C8.

Expressioni

Tissue specificityi

Widely expressed.1 Publication

Gene expression databases

BgeeiQ709C8.
CleanExiHS_VPS13C.
ExpressionAtlasiQ709C8. baseline and differential.
GenevestigatoriQ709C8.

Organism-specific databases

HPAiHPA043356.
HPA043507.

Interactioni

Protein-protein interaction databases

BioGridi120186. 5 interactions.
IntActiQ709C8. 2 interactions.
STRINGi9606.ENSP00000261517.

Structurei

3D structure databases

ProteinModelPortaliQ709C8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi145 – 17935Lys-richSequence AnalysisAdd
BLAST

Sequence similaritiesi

Belongs to the VPS13 family.Sequence Analysis

Phylogenomic databases

eggNOGiCOG5043.
GeneTreeiENSGT00410000025397.
HOVERGENiHBG079736.
InParanoidiQ709C8.
OMAiTHIIETR.
OrthoDBiEOG7S4X52.
PhylomeDBiQ709C8.
TreeFamiTF300316.

Family and domain databases

InterProiIPR015412. Autophagy-rel_C.
IPR026847. VPS13.
IPR026854. VPS13A_N.
IPR009543. VPSAP_dom.
[Graphical view]
PANTHERiPTHR16166. PTHR16166. 1 hit.
PfamiPF09333. ATG_C. 1 hit.
PF12624. Chorein_N. 1 hit.
PF06650. DUF1162. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. Align

Isoform 11 Publication (identifier: Q709C8-1) [UniParc]FASTAAdd to Basket

Also known as: 2A1 Publication

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVLESVVADL LNRFLGDYVE NLNKSQLKLG IWGGNVALDN LQIKENALSE
60 70 80 90 100
LDVPFKVKAG QIDKLTLKIP WKNLYGEAVV ATLEGLYLLV VPGASIKYDA
110 120 130 140 150
VKEEKSLQDV KQKELSRIEE ALQKAAEKGT HSGEFIYGLE NFVYKDIKPG
160 170 180 190 200
RKRKKHKKHF KKPFKGLDRS KDKPKEAKKD TFVEKLATQV IKNVQVKITD
210 220 230 240 250
IHIKYEDDVT DPKRPLSFGV TLGELSLLTA NEHWTPCILN EADKIIYKLI
260 270 280 290 300
RLDSLSAYWN VNCSMSYQRS REQILDQLKN EILTSGNIPP NYQYIFQPIS
310 320 330 340 350
ASAKLYMNPY AESELKTPKL DCNIEIQNIA IELTKPQYLS MIDLLESVDY
360 370 380 390 400
MVRNAPYRKY KPYLPLHTNG RRWWKYAIDS VLEVHIRRYT QMWSWSNIKK
410 420 430 440 450
HRQLLKSYKI AYKNKLTQSK VSEEIQKEIQ DLEKTLDVFN IILARQQAQV
460 470 480 490 500
EVIRSGQKLR KKSADTGEKR GGWFSGLWGK KESKKKDEES LIPETIDDLM
510 520 530 540 550
TPEEKDKLFT AIGYSESTHN LTLPKQYVAH IMTLKLVSTS VTIRENKNIP
560 570 580 590 600
EILKIQIIGL GTQVSQRPGA QALKVEAKLE HWYITGLRQQ DIVPSLVASI
610 620 630 640 650
GDTTSSLLKI KFETNPEDSP ADQTLIVQSQ PVEVIYDAKT VNAVVEFFQS
660 670 680 690 700
NKGLDLEQIT SATLMKLEEI KERTATGLTH IIETRKVLDL RINLKPSYLV
710 720 730 740 750
VPQTGFHHEK SDLLILDFGT FQLNSKDQGL QKTTNSSLEE IMDKAYDKFD
760 770 780 790 800
VEIKNVQLLF ARAEETWKKC RFQHPSTMHI LQPMDIHVEL AKAMVEKDIR
810 820 830 840 850
MARFKVSGGL PLMHVRISDQ KMKDVLYLMN SIPLPQKSSA QSPERQVSSI
860 870 880 890 900
PIISGGTKGL LGTSLLLDTV ESESDDEYFD AEDGEPQTCK SMKGSELKKA
910 920 930 940 950
AEVPNEELIN LLLKFEIKEV ILEFTKQQKE EDTILVFNVT QLGTEATMRT
960 970 980 990 1000
FDLTVVSYLK KISLDYHEIE GSKRKPLHLI SSSDKPGLDL LKVEYIKADK
1010 1020 1030 1040 1050
NGPSFQTAFG KTEQTVKVAF SSLNLLLQTQ ALVASINYLT TIIPSDDQSI
1060 1070 1080 1090 1100
SVAKEVQIST EKQQKNSTLP KAIVSSRDSD IIDFRLFAKL NAFCVIVCNE
1110 1120 1130 1140 1150
KNNIAEIKIQ GLDSSLSLQS RKQSLFARLE NIIVTDVDPK TVHKKAVSIM
1160 1170 1180 1190 1200
GNEVFRFNLD LYPDATEGDL YTDMSKVDGV LSLNVGCIQI VYLHKFLMSL
1210 1220 1230 1240 1250
LNFLNNFQTA KESLSAATAQ AAERAATSVK DLAQRSFRVS INIDLKAPVI
1260 1270 1280 1290 1300
VIPQSSISTN AVVVDLGLIR VHNQFSLVSD EDYLNPPVID RMDVQLTKLT
1310 1320 1330 1340 1350
LYRTVIQPGI YHPDIQLLHP INLEFLVNRN LAASWYHKVP VVEIKGHLDS
1360 1370 1380 1390 1400
MNVSLNQEDL NLLFRILTEN LCEGTEDLDK VKPRVQETGE IKEPLEISIS
1410 1420 1430 1440 1450
QDVHDSKNTL TTGVEEIRSV DIINMLLNFE IKEVVVTLMK KSEKKGRPLH
1460 1470 1480 1490 1500
ELNVLQLGME AKVKTYDMTA KAYLKKISMQ CFDFTDSKGE PLHIINSSNV
1510 1520 1530 1540 1550
TDEPLLKMLL TKADSDGPEF KTIHDSTKQR LKVSFASLDL VLHLEALLSF
1560 1570 1580 1590 1600
MDFLSSAAPF SEPSSSEKES ELKPLVGESR SIAVKAVSSN ISQKDVFDLK
1610 1620 1630 1640 1650
ITAELNAFNV FVCDQKCNIA DIKIHGMDAS ISVKPKQTDV FARLKDIIVM
1660 1670 1680 1690 1700
NVDLQSIHKK AVSILGDEVF RFQLTLYPDA TEGEAYADMS KVDGKLSFKV
1710 1720 1730 1740 1750
GCIQIVYVHK FFMSLLNFLN NFQTAKEALS TATVQAAERA ASSMKDLAQK
1760 1770 1780 1790 1800
SFRLLMDINL KAPVIIIPQS SVSPNAVIAD LGLIRVENKF SLVPMEHYSL
1810 1820 1830 1840 1850
PPVIDKMNIE LTQLKLSRTI LQASLPQNDI EILKPVNMLL SIQRNLAAAW
1860 1870 1880 1890 1900
YVQIPGMEIK GKLKPMQVAL SEDDLTVLMK ILLENLGEAS SQPSPTQSVQ
1910 1920 1930 1940 1950
ETVRVRKVDV SSVPDHLKEQ EDWTDSKLSM NQIVSLQFDF HFESLSIILY
1960 1970 1980 1990 2000
NNDINQESGV AFHNDSFQLG ELRLHLMASS GKMFKDGSMN VSVKLKTCTL
2010 2020 2030 2040 2050
DDLREGIERA TSRMIDRKND QDNNSSMIDI SYKQDKNGSQ IDAVLDKLYV
2060 2070 2080 2090 2100
CASVEFLMTV ADFFIKAVPQ SPENVAKETQ ILPRQTATGK VKIEKDDSVR
2110 2120 2130 2140 2150
PNMTLKAMIT DPEVVFVASL TKADAPALTA SFQCNLSLST SKLEQMMEAS
2160 2170 2180 2190 2200
VRDLKVLACP FLREKRGKNI TTVLQPCSLF MEKCTWASGK QNINIMVKEF
2210 2220 2230 2240 2250
IIKISPIILN TVLTIMAALS PKTKEDGSKD TSKEMENLWG IKSINDYNTW
2260 2270 2280 2290 2300
FLGVDTATEI TESFKGIEHS LIEENCGVVV ESIQVTLECG LGHRTVPLLL
2310 2320 2330 2340 2350
AESKFSGNIK NWTSLMAAVA DVTLQVHYYN EIHAVWEPLI ERVEGKRQWN
2360 2370 2380 2390 2400
LRLDVKKNPV QDKSLLPGDD FIPEPQMAIH ISSGNTMNIT ISKSCLNVFN
2410 2420 2430 2440 2450
NLAKGFSEGT ASTFDYSLKD RAPFTVKNAV GVPIKVKPNC NLRVMGFPEK
2460 2470 2480 2490 2500
SDIFDVDAGQ NLELEYASMV PSSQGNLSIL SRQESSFFTL TIVPHGYTEV
2510 2520 2530 2540 2550
ANIPVARPGR RLYNVRNPNA SHSDSVLVQI DATEGNKVIT LRSPLQIKNH
2560 2570 2580 2590 2600
FSIAFIIYKF VKNVKLLERI GIARPEEEFH VPLDSYRCQL FIQPAGILEH
2610 2620 2630 2640 2650
QYKESTTYIS WKEELHRSRE VRCMLQCPSV EVSFLPLIVN TVALPDELSY
2660 2670 2680 2690 2700
ICTHGEDWDV AYIIHLYPSL TLRNLLPYSL RYLLEGTAET HELAEGSTAD
2710 2720 2730 2740 2750
VLHSRISGEI MELVLVKYQG KNWNGHFRIR DTLPEFFPVC FSSDSTEVTT
2760 2770 2780 2790 2800
VDLSVHVRRI GSRMVLSVFS PYWLINKTTR VLQYRSEDIH VKHPADFRDI
2810 2820 2830 2840 2850
ILFSFKKKNI FTKNKVQLKI STSAWSSSFS LDTVGSYGCV KCPANNMEYL
2860 2870 2880 2890 2900
VGVSIKMSSF NLSRIVTLTP FCTIANKSSL ELEVGEIASD GSMPTNKWNY
2910 2920 2930 2940 2950
IASSECLPFW PESLSGKLCV RVVGCEGSSK PFFYNRQDNG TLLSLEDLNG
2960 2970 2980 2990 3000
GILVDVNTAE HSTVITFSDY HEGSAPALIM NHTPWDILTY KQSGSPEEMV
3010 3020 3030 3040 3050
LLPRQARLFA WADPTGTRKL TWTYAANVGE HDLLKDGCGQ FPYDANIQIH
3060 3070 3080 3090 3100
WVSFLDGRQR VLLFTDDVAL VSKALQAEEM EQADYEITLS LHSLGLSLVN
3110 3120 3130 3140 3150
NESKQEVSYI GITSSGVVWE VKPKQKWKPF SQKQIILLEQ SYQKHQISRD
3160 3170 3180 3190 3200
HGWIKLDNNF EVNFDKDPME MRLPIRSPIK RDFLSGIQIE FKQSSHQRSL
3210 3220 3230 3240 3250
RARLYWLQVD NQLPGAMFPV VFHPVAPPKS IALDSEPKPF IDVSVITRFN
3260 3270 3280 3290 3300
EYSKVLQFKY FMVLIQEMAL KIDQGFLGAI IALFTPTTDP EAERRRTKLI
3310 3320 3330 3340 3350
QQDIDALNAE LMETSMTDMS ILSFFEHFHI SPVKLHLSLS LGSGGEESDK
3360 3370 3380 3390 3400
EKQEMFAVHS VNLLLKSIGA TLTDVDDLIF KLAYYEIRYQ FYKRDQLIWS
3410 3420 3430 3440 3450
VVRHYSEQFL KQMYVLVLGL DVLGNPFGLI RGLSEGVEAL FYEPFQGAVQ
3460 3470 3480 3490 3500
GPEEFAEGLV IGVRSLFGHT VGGAAGVVSR ITGSVGKGLA AITMDKEYQQ
3510 3520 3530 3540 3550
KRREELSRQP RDFGDSLARG GKGFLRGVVG GVTGIITKPV EGAKKEGAAG
3560 3570 3580 3590 3600
FFKGIGKGLV GAVARPTGGI VDMASSTFQG IQRAAESTEE VSSLRPPRLI
3610 3620 3630 3640 3650
HEDGIIRPYD RQESEGSDLL ENHIKKLEGE TYRYHCAIPG SKKTILMVTN
3660 3670 3680 3690 3700
RRVLCIKEVE ILGLMCVDWQ CPFEDFVFPP SVSENVLKIS VKEQGLFHKK
3710 3720 3730 3740 3750
DSANQGCVRK VYLKDTATAE RACNAIEDAQ STRQQQKLMK QSSVRLLRPQ

LPS
Length:3,753
Mass (Da):422,390
Last modified:July 5, 2004 - v1
Checksum:i8B51A6778A89F639
GO
Isoform 21 Publication (identifier: Q709C8-2) [UniParc]FASTAAdd to Basket

Also known as: 2B1 Publication

The sequence of this isoform differs from the canonical sequence as follows:
     3622-3627: NHIKKL → QELEIQE
     3628-3753: Missing.

Show »
Length:3,628
Mass (Da):408,198
Checksum:i23C6AE1C69EEB060
GO
Isoform 31 Publication (identifier: Q709C8-3) [UniParc]FASTAAdd to Basket

Also known as: 1A1 Publication

The sequence of this isoform differs from the canonical sequence as follows:
     129-171: Missing.

Show »
Length:3,710
Mass (Da):417,276
Checksum:i80E0633970F14F4B
GO
Isoform 41 Publication (identifier: Q709C8-4) [UniParc]FASTAAdd to Basket

Also known as: 1B1 Publication

The sequence of this isoform differs from the canonical sequence as follows:
     129-171: Missing.
     3622-3627: NHIKKL → QELEIQE
     3628-3753: Missing.

Show »
Length:3,585
Mass (Da):403,084
Checksum:i433756079CA119A0
GO

Sequence cautioni

The sequence BAA90972.1 differs from that shown. Reason: Erroneous initiation.
The sequence BAA92659.1 differs from that shown. Reason: Erroneous initiation.

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti153 – 1531R → H.
Corresponds to variant rs12595158 [ dbSNP | Ensembl ].
VAR_029548
Natural varianti974 – 9741R → K.1 Publication
Corresponds to variant rs3784634 [ dbSNP | Ensembl ].
VAR_029549
Natural varianti1132 – 11321I → V.
Corresponds to variant rs3784635 [ dbSNP | Ensembl ].
VAR_029550
Natural varianti1302 – 13021Y → C.
Corresponds to variant rs2303405 [ dbSNP | Ensembl ].
VAR_029551
Natural varianti1485 – 14851T → A.
Corresponds to variant rs8026956 [ dbSNP | Ensembl ].
VAR_029552
Natural varianti1495 – 14951I → V.
Corresponds to variant rs11629598 [ dbSNP | Ensembl ].
VAR_029553
Natural varianti1592 – 15921S → Y.
Corresponds to variant rs11629838 [ dbSNP | Ensembl ].
VAR_029554
Natural varianti2322 – 23221V → M.
Corresponds to variant rs12907567 [ dbSNP | Ensembl ].
VAR_029555
Natural varianti2808 – 28081K → R.
Corresponds to variant rs34060567 [ dbSNP | Ensembl ].
VAR_053808
Natural varianti2913 – 29131S → N.
Corresponds to variant rs10851704 [ dbSNP | Ensembl ].
VAR_029556

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei129 – 17143Missing in isoform 3 and isoform 4. 1 PublicationVSP_052243Add
BLAST
Alternative sequencei3622 – 36276NHIKKL → QELEIQE in isoform 2 and isoform 4. 1 PublicationVSP_052244
Alternative sequencei3628 – 3753126Missing in isoform 2 and isoform 4. 1 PublicationVSP_052245Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ608770 mRNA. Translation: CAE75582.1.
AJ608771 mRNA. Translation: CAE75583.1.
AJ626860 mRNA. Translation: CAF25187.1.
AJ626861 mRNA. Translation: CAF25188.1.
AB037842 mRNA. Translation: BAA92659.1. Different initiation.
AK000143 mRNA. Translation: BAA90972.1. Different initiation.
BC069387 mRNA. Translation: AAH69387.1.
CCDSiCCDS10180.1. [Q709C8-3]
CCDS32257.1. [Q709C8-1]
CCDS45272.1. [Q709C8-2]
CCDS58367.1. [Q709C8-4]
RefSeqiNP_001018098.1. NM_001018088.2. [Q709C8-2]
NP_060154.3. NM_017684.4. [Q709C8-3]
NP_060550.2. NM_018080.3. [Q709C8-4]
NP_065872.1. NM_020821.2. [Q709C8-1]
UniGeneiHs.511668.

Genome annotation databases

EnsembliENST00000249837; ENSP00000249837; ENSG00000129003. [Q709C8-3]
ENST00000261517; ENSP00000261517; ENSG00000129003. [Q709C8-1]
ENST00000395896; ENSP00000379233; ENSG00000129003. [Q709C8-2]
ENST00000395898; ENSP00000379235; ENSG00000129003. [Q709C8-4]
GeneIDi54832.
KEGGihsa:54832.
UCSCiuc002agz.3. human. [Q709C8-1]
uc002aha.3. human. [Q709C8-3]
uc002ahb.2. human. [Q709C8-2]
uc002ahc.2. human. [Q709C8-4]

Polymorphism databases

DMDMi74712594.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ608770 mRNA. Translation: CAE75582.1 .
AJ608771 mRNA. Translation: CAE75583.1 .
AJ626860 mRNA. Translation: CAF25187.1 .
AJ626861 mRNA. Translation: CAF25188.1 .
AB037842 mRNA. Translation: BAA92659.1 . Different initiation.
AK000143 mRNA. Translation: BAA90972.1 . Different initiation.
BC069387 mRNA. Translation: AAH69387.1 .
CCDSi CCDS10180.1. [Q709C8-3 ]
CCDS32257.1. [Q709C8-1 ]
CCDS45272.1. [Q709C8-2 ]
CCDS58367.1. [Q709C8-4 ]
RefSeqi NP_001018098.1. NM_001018088.2. [Q709C8-2 ]
NP_060154.3. NM_017684.4. [Q709C8-3 ]
NP_060550.2. NM_018080.3. [Q709C8-4 ]
NP_065872.1. NM_020821.2. [Q709C8-1 ]
UniGenei Hs.511668.

3D structure databases

ProteinModelPortali Q709C8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 120186. 5 interactions.
IntActi Q709C8. 2 interactions.
STRINGi 9606.ENSP00000261517.

PTM databases

PhosphoSitei Q709C8.

Polymorphism databases

DMDMi 74712594.

Proteomic databases

MaxQBi Q709C8.
PaxDbi Q709C8.
PRIDEi Q709C8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000249837 ; ENSP00000249837 ; ENSG00000129003 . [Q709C8-3 ]
ENST00000261517 ; ENSP00000261517 ; ENSG00000129003 . [Q709C8-1 ]
ENST00000395896 ; ENSP00000379233 ; ENSG00000129003 . [Q709C8-2 ]
ENST00000395898 ; ENSP00000379235 ; ENSG00000129003 . [Q709C8-4 ]
GeneIDi 54832.
KEGGi hsa:54832.
UCSCi uc002agz.3. human. [Q709C8-1 ]
uc002aha.3. human. [Q709C8-3 ]
uc002ahb.2. human. [Q709C8-2 ]
uc002ahc.2. human. [Q709C8-4 ]

Organism-specific databases

CTDi 54832.
GeneCardsi GC15M062144.
HGNCi HGNC:23594. VPS13C.
HPAi HPA043356.
HPA043507.
MIMi 608879. gene.
neXtProti NX_Q709C8.
PharmGKBi PA134990089.
HUGEi Search...
GenAtlasi Search...

Phylogenomic databases

eggNOGi COG5043.
GeneTreei ENSGT00410000025397.
HOVERGENi HBG079736.
InParanoidi Q709C8.
OMAi THIIETR.
OrthoDBi EOG7S4X52.
PhylomeDBi Q709C8.
TreeFami TF300316.

Miscellaneous databases

ChiTaRSi VPS13C. human.
GenomeRNAii 54832.
NextBioi 57616.
PROi Q709C8.
SOURCEi Search...

Gene expression databases

Bgeei Q709C8.
CleanExi HS_VPS13C.
ExpressionAtlasi Q709C8. baseline and differential.
Genevestigatori Q709C8.

Family and domain databases

InterProi IPR015412. Autophagy-rel_C.
IPR026847. VPS13.
IPR026854. VPS13A_N.
IPR009543. VPSAP_dom.
[Graphical view ]
PANTHERi PTHR16166. PTHR16166. 1 hit.
Pfami PF09333. ATG_C. 1 hit.
PF12624. Chorein_N. 1 hit.
PF06650. DUF1162. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2; 3 AND 4), TISSUE SPECIFICITY.
    Tissue: Lymphoblast1 Publication.
  2. "Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro."
    Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O.
    DNA Res. 7:65-73(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-1439 (ISOFORMS 1/2), VARIANT LYS-974.
    Tissue: BrainImported.
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 3305-3753 (ISOFORMS 1/3).
    Tissue: ColonImported.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 3305-3753 (ISOFORMS 1/3).
  5. "Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry."
    Denis N.J., Vasilescu J., Lambert J.-P., Smith J.C., Figeys D.
    Proteomics 7:868-874(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: UBIQUITINATION [LARGE SCALE ANALYSIS] AT LYS-2357.
    Tissue: Mammary cancer.
  6. "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
    Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
    Anal. Chem. 81:4493-4501(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  7. "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
    Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
    Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-614; SER-619; THR-624 AND SER-737, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Leukemic T-cell.
  8. "Lysine acetylation targets protein complexes and co-regulates major cellular functions."
    Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M.
    Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-3538, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  9. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  10. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiVP13C_HUMAN
AccessioniPrimary (citable) accession number: Q709C8
Secondary accession number(s): Q6ISR4
, Q702P2, Q702P3, Q709C9, Q9NXN8, Q9P2C6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 5, 2004
Last modified: October 29, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 15
    Human chromosome 15: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3