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Protein

Putative Myb family transcription factor At1g14600

Gene

At1g14600

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Putative transcription factor.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi51 – 76H-T-H motifPROSITE-ProRule annotationAdd BLAST26

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA binding transcription factor activity Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Putative Myb family transcription factor At1g14600
Gene namesi
Ordered Locus Names:At1g14600
ORF Names:T5E21.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G14600
TAIRilocus:2204518 AT1G14600

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001971501 – 255Putative Myb family transcription factor At1g14600Add BLAST255

Proteomic databases

PaxDbiQ700D9

Expressioni

Gene expression databases

ExpressionAtlasiQ700D9 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliQ700D9
SMRiQ700D9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 80HTH myb-typePROSITE-ProRule annotationAdd BLAST61

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi95 – 99Poly-Arg5
Compositional biasi136 – 141Poly-Asp6
Compositional biasi184 – 192Poly-Glu9
Compositional biasi211 – 228Ser-richAdd BLAST18

Phylogenomic databases

eggNOGiENOG410IZ6D Eukaryota
ENOG410YDJI LUCA
HOGENOMiHOG000239342
InParanoidiQ700D9
OMAiIFRDCFA
OrthoDBiEOG09360O9N

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR006447 Myb_dom_plants
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 1 hit

Sequencei

Sequence statusi: Complete.

Q700D9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT
60 70 80 90 100
PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
110 120 130 140 150
DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER
160 170 180 190 200
TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
210 220 230 240 250
HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF

SLLHS
Length:255
Mass (Da):29,094
Last modified:May 3, 2011 - v2
Checksum:iDB0970CE3893D70B
GO

Sequence cautioni

The sequence AAF63176 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti112S → P in CAG25859 (PubMed:15208423).Curated1
Sequence conflicti112S → P in AAS79548 (PubMed:15208423).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010657 Genomic DNA Translation: AAF63176.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29189.1
AJ630486 mRNA Translation: CAG25859.1
AY568658 mRNA Translation: AAS79548.1
RefSeqiNP_172912.3, NM_101327.5
UniGeneiAt.41962

Genome annotation databases

EnsemblPlantsiAT1G14600.1; AT1G14600.1; AT1G14600
GeneIDi838022
GrameneiAT1G14600.1; AT1G14600.1; AT1G14600
KEGGiath:AT1G14600

Similar proteinsi

Entry informationi

Entry nameiMYBF_ARATH
AccessioniPrimary (citable) accession number: Q700D9
Secondary accession number(s): Q9MA23
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: May 3, 2011
Last modified: April 25, 2018
This is version 99 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health