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Protein

Putative Myb family transcription factor At1g14600

Gene

At1g14600

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Putative transcription factor.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi51 – 7626H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Putative Myb family transcription factor At1g14600
Gene namesi
Ordered Locus Names:At1g14600
ORF Names:T5E21.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G14600.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 255255Putative Myb family transcription factor At1g14600PRO_0000197150Add
BLAST

Proteomic databases

PaxDbiQ700D9.
PRIDEiQ700D9.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G14600.1.

Structurei

3D structure databases

ProteinModelPortaliQ700D9.
SMRiQ700D9. Positions 24-76.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini20 – 8061HTH myb-typePROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi95 – 995Poly-Arg
Compositional biasi136 – 1416Poly-Asp
Compositional biasi184 – 1929Poly-Glu
Compositional biasi211 – 22818Ser-richAdd
BLAST

Sequence similaritiesi

Contains 1 HTH myb-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IZ6D. Eukaryota.
ENOG410YDJI. LUCA.
HOGENOMiHOG000239342.
InParanoidiQ700D9.
OMAiGESIKFQ.
OrthoDBiEOG09360O9N.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR017930. Myb_dom.
IPR006447. Myb_dom_plants.
IPR001005. SANT/Myb.
[Graphical view]
PfamiPF00249. Myb_DNA-binding. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
TIGRFAMsiTIGR01557. myb_SHAQKYF. 1 hit.
PROSITEiPS51294. HTH_MYB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q700D9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT
60 70 80 90 100
PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
110 120 130 140 150
DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER
160 170 180 190 200
TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
210 220 230 240 250
HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF

SLLHS
Length:255
Mass (Da):29,094
Last modified:May 3, 2011 - v2
Checksum:iDB0970CE3893D70B
GO

Sequence cautioni

The sequence AAF63176 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti112 – 1121S → P in CAG25859 (PubMed:15208423).Curated
Sequence conflicti112 – 1121S → P in AAS79548 (PubMed:15208423).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010657 Genomic DNA. Translation: AAF63176.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE29189.1.
AJ630486 mRNA. Translation: CAG25859.1.
AY568658 mRNA. Translation: AAS79548.1.
RefSeqiNP_172912.3. NM_101327.4.
UniGeneiAt.41962.

Genome annotation databases

EnsemblPlantsiAT1G14600.1; AT1G14600.1; AT1G14600.
GeneIDi838022.
GrameneiAT1G14600.1; AT1G14600.1; AT1G14600.
KEGGiath:AT1G14600.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010657 Genomic DNA. Translation: AAF63176.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE29189.1.
AJ630486 mRNA. Translation: CAG25859.1.
AY568658 mRNA. Translation: AAS79548.1.
RefSeqiNP_172912.3. NM_101327.4.
UniGeneiAt.41962.

3D structure databases

ProteinModelPortaliQ700D9.
SMRiQ700D9. Positions 24-76.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G14600.1.

Proteomic databases

PaxDbiQ700D9.
PRIDEiQ700D9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G14600.1; AT1G14600.1; AT1G14600.
GeneIDi838022.
GrameneiAT1G14600.1; AT1G14600.1; AT1G14600.
KEGGiath:AT1G14600.

Organism-specific databases

TAIRiAT1G14600.

Phylogenomic databases

eggNOGiENOG410IZ6D. Eukaryota.
ENOG410YDJI. LUCA.
HOGENOMiHOG000239342.
InParanoidiQ700D9.
OMAiGESIKFQ.
OrthoDBiEOG09360O9N.

Miscellaneous databases

PROiQ700D9.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR017930. Myb_dom.
IPR006447. Myb_dom_plants.
IPR001005. SANT/Myb.
[Graphical view]
PfamiPF00249. Myb_DNA-binding. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
TIGRFAMsiTIGR01557. myb_SHAQKYF. 1 hit.
PROSITEiPS51294. HTH_MYB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiMYBF_ARATH
AccessioniPrimary (citable) accession number: Q700D9
Secondary accession number(s): Q9MA23
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: May 3, 2011
Last modified: September 7, 2016
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.