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Q6ZWV7

- RL35_MOUSE

UniProt

Q6ZWV7 - RL35_MOUSE

Protein

60S ribosomal protein L35

Gene

Rpl35

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
    REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L35
    Gene namesi
    Name:Rpl35
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 1

    Organism-specific databases

    MGIiMGI:1913739. Rpl35.

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 12312260S ribosomal protein L35PRO_0000320063Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei19 – 191N6-acetyllysineBy similarity
    Modified residuei43 – 431N6-acetyllysineBy similarity

    Keywords - PTMi

    Acetylation

    Proteomic databases

    MaxQBiQ6ZWV7.
    PaxDbiQ6ZWV7.
    PRIDEiQ6ZWV7.

    PTM databases

    PhosphoSiteiQ6ZWV7.

    Expressioni

    Gene expression databases

    BgeeiQ6ZWV7.
    CleanExiMM_RPL35.
    GenevestigatoriQ6ZWV7.

    Interactioni

    Protein-protein interaction databases

    BioGridi211511. 8 interactions.
    IntActiQ6ZWV7. 4 interactions.
    MINTiMINT-1862907.
    STRINGi10090.ENSMUSP00000099843.

    Structurei

    3D structure databases

    ProteinModelPortaliQ6ZWV7.
    SMRiQ6ZWV7. Positions 1-123.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L29P family.Curated

    Phylogenomic databases

    eggNOGiCOG0255.
    GeneTreeiENSGT00390000016384.
    HOGENOMiHOG000207749.
    HOVERGENiHBG000862.
    InParanoidiQ6ZWV7.
    KOiK02918.
    OMAiLRAKQTR.
    OrthoDBiEOG7TBC4G.
    PhylomeDBiQ6ZWV7.
    TreeFamiTF314951.

    Family and domain databases

    Gene3Di1.10.287.310. 1 hit.
    HAMAPiMF_00374. Ribosomal_L29.
    InterProiIPR001854. Ribosomal_L29.
    IPR018254. Ribosomal_L29_CS.
    [Graphical view]
    PfamiPF00831. Ribosomal_L29. 1 hit.
    [Graphical view]
    SUPFAMiSSF46561. SSF46561. 1 hit.
    TIGRFAMsiTIGR00012. L29. 1 hit.
    PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q6ZWV7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKIKARDLR GKKKEELLKQ LDDLKVELSQ LRVAKVTGGA ASKLSKIRVV    50
    RKSIARVLTV INQTQKENLR KFYKGKKYKP LDLRPKKTRA MRRRLTKHEE 100
    KLKTKKQQRK ERLYPLRKYA VKA 123
    Length:123
    Mass (Da):14,553
    Last modified:July 5, 2004 - v1
    Checksum:i67B76951361674EB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK010639 mRNA. Translation: BAB27082.1.
    AK012335 mRNA. Translation: BAB28169.1.
    AK151707 mRNA. Translation: BAE30629.1.
    AK169650 mRNA. Translation: BAE41274.1.
    AL844588 Genomic DNA. Translation: CAM46062.1.
    BC094634 mRNA. Translation: AAH94634.1.
    BC125652 mRNA. Translation: AAI25653.1.
    BC125656 mRNA. Translation: AAI25657.1.
    CCDSiCCDS16015.1.
    RefSeqiNP_079868.1. NM_025592.3.
    UniGeneiMm.345333.

    Genome annotation databases

    EnsembliENSMUST00000080861; ENSMUSP00000079672; ENSMUSG00000062997.
    ENSMUST00000102782; ENSMUSP00000099843; ENSMUSG00000078193.
    GeneIDi66489.
    KEGGimmu:66489.
    UCSCiuc008jnz.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK010639 mRNA. Translation: BAB27082.1 .
    AK012335 mRNA. Translation: BAB28169.1 .
    AK151707 mRNA. Translation: BAE30629.1 .
    AK169650 mRNA. Translation: BAE41274.1 .
    AL844588 Genomic DNA. Translation: CAM46062.1 .
    BC094634 mRNA. Translation: AAH94634.1 .
    BC125652 mRNA. Translation: AAI25653.1 .
    BC125656 mRNA. Translation: AAI25657.1 .
    CCDSi CCDS16015.1.
    RefSeqi NP_079868.1. NM_025592.3.
    UniGenei Mm.345333.

    3D structure databases

    ProteinModelPortali Q6ZWV7.
    SMRi Q6ZWV7. Positions 1-123.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 211511. 8 interactions.
    IntActi Q6ZWV7. 4 interactions.
    MINTi MINT-1862907.
    STRINGi 10090.ENSMUSP00000099843.

    PTM databases

    PhosphoSitei Q6ZWV7.

    Proteomic databases

    MaxQBi Q6ZWV7.
    PaxDbi Q6ZWV7.
    PRIDEi Q6ZWV7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000080861 ; ENSMUSP00000079672 ; ENSMUSG00000062997 .
    ENSMUST00000102782 ; ENSMUSP00000099843 ; ENSMUSG00000078193 .
    GeneIDi 66489.
    KEGGi mmu:66489.
    UCSCi uc008jnz.1. mouse.

    Organism-specific databases

    CTDi 11224.
    MGIi MGI:1913739. Rpl35.

    Phylogenomic databases

    eggNOGi COG0255.
    GeneTreei ENSGT00390000016384.
    HOGENOMi HOG000207749.
    HOVERGENi HBG000862.
    InParanoidi Q6ZWV7.
    KOi K02918.
    OMAi LRAKQTR.
    OrthoDBi EOG7TBC4G.
    PhylomeDBi Q6ZWV7.
    TreeFami TF314951.

    Enzyme and pathway databases

    Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
    REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Miscellaneous databases

    NextBioi 321836.
    PROi Q6ZWV7.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q6ZWV7.
    CleanExi MM_RPL35.
    Genevestigatori Q6ZWV7.

    Family and domain databases

    Gene3Di 1.10.287.310. 1 hit.
    HAMAPi MF_00374. Ribosomal_L29.
    InterProi IPR001854. Ribosomal_L29.
    IPR018254. Ribosomal_L29_CS.
    [Graphical view ]
    Pfami PF00831. Ribosomal_L29. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46561. SSF46561. 1 hit.
    TIGRFAMsi TIGR00012. L29. 1 hit.
    PROSITEi PS00579. RIBOSOMAL_L29. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J and NOD.
      Tissue: Bone marrow and Thymus.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6J.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Brain and Mammary gland.

    Entry informationi

    Entry nameiRL35_MOUSE
    AccessioniPrimary (citable) accession number: Q6ZWV7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 26, 2008
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3