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Q6ZWV7

- RL35_MOUSE

UniProt

Q6ZWV7 - RL35_MOUSE

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Protein

60S ribosomal protein L35

Gene
Rpl35
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L35
Gene namesi
Name:Rpl35
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 1

Organism-specific databases

MGIiMGI:1913739. Rpl35.

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Chaini2 – 12312260S ribosomal protein L35UniRule annotationPRO_0000320063Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei19 – 191N6-acetyllysine By similarity
Modified residuei43 – 431N6-acetyllysine By similarity

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ6ZWV7.
PaxDbiQ6ZWV7.
PRIDEiQ6ZWV7.

PTM databases

PhosphoSiteiQ6ZWV7.

Expressioni

Gene expression databases

BgeeiQ6ZWV7.
CleanExiMM_RPL35.
GenevestigatoriQ6ZWV7.

Interactioni

Protein-protein interaction databases

BioGridi211511. 8 interactions.
IntActiQ6ZWV7. 4 interactions.
MINTiMINT-1862907.
STRINGi10090.ENSMUSP00000099843.

Structurei

3D structure databases

ProteinModelPortaliQ6ZWV7.
SMRiQ6ZWV7. Positions 1-123.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0255.
GeneTreeiENSGT00390000016384.
HOGENOMiHOG000207749.
HOVERGENiHBG000862.
InParanoidiQ6ZWV7.
KOiK02918.
OMAiLRAKQTR.
OrthoDBiEOG7TBC4G.
PhylomeDBiQ6ZWV7.
TreeFamiTF314951.

Family and domain databases

Gene3Di1.10.287.310. 1 hit.
HAMAPiMF_00374. Ribosomal_L29.
InterProiIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamiPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q6ZWV7-1 [UniParc]FASTAAdd to Basket

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MAKIKARDLR GKKKEELLKQ LDDLKVELSQ LRVAKVTGGA ASKLSKIRVV    50
RKSIARVLTV INQTQKENLR KFYKGKKYKP LDLRPKKTRA MRRRLTKHEE 100
KLKTKKQQRK ERLYPLRKYA VKA 123
Length:123
Mass (Da):14,553
Last modified:July 5, 2004 - v1
Checksum:i67B76951361674EB
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK010639 mRNA. Translation: BAB27082.1.
AK012335 mRNA. Translation: BAB28169.1.
AK151707 mRNA. Translation: BAE30629.1.
AK169650 mRNA. Translation: BAE41274.1.
AL844588 Genomic DNA. Translation: CAM46062.1.
BC094634 mRNA. Translation: AAH94634.1.
BC125652 mRNA. Translation: AAI25653.1.
BC125656 mRNA. Translation: AAI25657.1.
CCDSiCCDS16015.1.
RefSeqiNP_079868.1. NM_025592.3.
UniGeneiMm.345333.

Genome annotation databases

EnsembliENSMUST00000080861; ENSMUSP00000079672; ENSMUSG00000062997.
ENSMUST00000102782; ENSMUSP00000099843; ENSMUSG00000078193.
GeneIDi66489.
KEGGimmu:66489.
UCSCiuc008jnz.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK010639 mRNA. Translation: BAB27082.1 .
AK012335 mRNA. Translation: BAB28169.1 .
AK151707 mRNA. Translation: BAE30629.1 .
AK169650 mRNA. Translation: BAE41274.1 .
AL844588 Genomic DNA. Translation: CAM46062.1 .
BC094634 mRNA. Translation: AAH94634.1 .
BC125652 mRNA. Translation: AAI25653.1 .
BC125656 mRNA. Translation: AAI25657.1 .
CCDSi CCDS16015.1.
RefSeqi NP_079868.1. NM_025592.3.
UniGenei Mm.345333.

3D structure databases

ProteinModelPortali Q6ZWV7.
SMRi Q6ZWV7. Positions 1-123.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 211511. 8 interactions.
IntActi Q6ZWV7. 4 interactions.
MINTi MINT-1862907.
STRINGi 10090.ENSMUSP00000099843.

PTM databases

PhosphoSitei Q6ZWV7.

Proteomic databases

MaxQBi Q6ZWV7.
PaxDbi Q6ZWV7.
PRIDEi Q6ZWV7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000080861 ; ENSMUSP00000079672 ; ENSMUSG00000062997 .
ENSMUST00000102782 ; ENSMUSP00000099843 ; ENSMUSG00000078193 .
GeneIDi 66489.
KEGGi mmu:66489.
UCSCi uc008jnz.1. mouse.

Organism-specific databases

CTDi 11224.
MGIi MGI:1913739. Rpl35.

Phylogenomic databases

eggNOGi COG0255.
GeneTreei ENSGT00390000016384.
HOGENOMi HOG000207749.
HOVERGENi HBG000862.
InParanoidi Q6ZWV7.
KOi K02918.
OMAi LRAKQTR.
OrthoDBi EOG7TBC4G.
PhylomeDBi Q6ZWV7.
TreeFami TF314951.

Enzyme and pathway databases

Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi 321836.
PROi Q6ZWV7.
SOURCEi Search...

Gene expression databases

Bgeei Q6ZWV7.
CleanExi MM_RPL35.
Genevestigatori Q6ZWV7.

Family and domain databases

Gene3Di 1.10.287.310. 1 hit.
HAMAPi MF_00374. Ribosomal_L29.
InterProi IPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view ]
Pfami PF00831. Ribosomal_L29. 1 hit.
[Graphical view ]
SUPFAMi SSF46561. SSF46561. 1 hit.
TIGRFAMsi TIGR00012. L29. 1 hit.
PROSITEi PS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NOD.
    Tissue: Bone marrow and Thymus.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Brain and Mammary gland.

Entry informationi

Entry nameiRL35_MOUSE
AccessioniPrimary (citable) accession number: Q6ZWV7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: July 5, 2004
Last modified: September 3, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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