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Protein
Submitted name:

Putative uncharacterized protein

Gene

Syne1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Syne1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1927152. Syne1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ6ZWS6.

Expressioni

Gene expression databases

BgeeiQ6ZWS6.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000039440.

Structurei

3D structure databases

ProteinModelPortaliQ6ZWS6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG0516. Eukaryota.
COG5069. LUCA.
HOVERGENiHBG056221.

Family and domain databases

InterProiIPR030265. SYNE1.
[Graphical view]
PANTHERiPTHR11915:SF267. PTHR11915:SF267. 3 hits.

Sequencei

Sequence statusi: Complete.

Q6ZWS6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPPDQLEDMA ERFHFVSSTS ELHLMKMEFL ELKYRLLSLL VLAESKLKSW
60 70 80 90 100
IIKYGRRESV ELLLQSYISF IENSKFFEQY EVTYQILKQT ADIYVKAEGS
110 120 130 140 150
VEEAENVMKF MSEATAQWRN LSVEVRSVRS MLEEVISNWD RYGDTVASLQ
160 170 180 190 200
AWLEDAEKML SQSEHAKKDF FRNLPHWIQQ HTAMNDAGNF LIETCDEIVS
210 220 230 240 250
RDLKQQLLLL NGRWRELFME VKQYARADEM DRMKKEYIDV TTTLFGFATE
260 270 280 290 300
AHRKLSEPLE VSFINVKLLI QDLEDLEKRV PVMDAQYKMI AKKAHLFAKE
310 320 330 340 350
SPQEEANEML TTMSKLKEQL SKVKECCSPL LYEAQQLTVP LEELETQITS
360 370 380 390 400
FYDSLGKINE ILSVLEQEAQ SSTLFKQKHQ ELLASQENCK KSLTLIEKGS
410 420 430 440 450
QSVQKLVTSS QARKPWDHTK LQKQIADVHH AFQSMIKKTG DWKKHVEANS
460 470 480 490 500
RLMKKFEESR AELEKVLRVA QEGLEEKGDP EELLRRHTEF FSQLDQRVLN
510 520 530 540 550
AFLKACDELT DILPEQEQQG LQEAVRKLHK QWKDLQGEAP YHLLHLKIAV
560 570 580 590 600
EKDRFSAAVE ECRAELEQET KLAPQEGSEK IIKEHRVFFS DKGPHHLCEK
610 620 630 640 650
RLQLIEELCG KLPVQDPVRD TCGACHTALK ELKASIDNTY TMLVDDPDKW
660 670 680 690 700
KDYTSRFSEF SSWVSAKKAC LKKIKDEPID TGNHDEVKHM VDEIRNDITK
710 720 730 740 750
KGESLSWLKS RLKYLIDISS ENEAQKRGDE LAELSSSFKA LVALLSEVEK
760 770 780 790 800
LLSNFGECVQ YKEIVKSSLE GLISGPQESK EEAEMILDSK NLLEAQQLLL
810 820 830 840 850
HHQQKTKMIS AKKRDLQEQM EQAQQGGQAG PGQEELRKLE STLTGLEQSR
860 870 880 890 900
ERQERRIQVS LRKWERFETN KETVVRYLFQ TGSSHERFLS FSSLESLSSE
910 920 930 940 950
LEQTKEFSKR TESIATQAEN LVKEAAELPL GPRNKRVLQR QAKSIKEQVT
960
TLEDTLEEEY VLHHF
Length:965
Mass (Da):111,869
Last modified:July 19, 2004 - v1
Checksum:i47FA2E10A12E8D58
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK032502 mRNA. Translation: BAC27900.1.
UniGeneiMm.331626.

Genome annotation databases

UCSCiuc007ego.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK032502 mRNA. Translation: BAC27900.1.
UniGeneiMm.331626.

3D structure databases

ProteinModelPortaliQ6ZWS6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000039440.

Proteomic databases

PaxDbiQ6ZWS6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiuc007ego.1. mouse.

Organism-specific databases

MGIiMGI:1927152. Syne1.

Phylogenomic databases

eggNOGiKOG0516. Eukaryota.
COG5069. LUCA.
HOVERGENiHBG056221.

Miscellaneous databases

ChiTaRSiSyne1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ6ZWS6.

Family and domain databases

InterProiIPR030265. SYNE1.
[Graphical view]
PANTHERiPTHR11915:SF267. PTHR11915:SF267. 3 hits.
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Olfactory brainImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Olfactory brainImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Olfactory brainImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Olfactory brainImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Olfactory brainImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Olfactory brainImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Olfactory brainImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Olfactory brainImported.

Entry informationi

Entry nameiQ6ZWS6_MOUSE
AccessioniPrimary (citable) accession number: Q6ZWS6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 19, 2004
Last sequence update: July 19, 2004
Last modified: March 16, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.