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Protein
Submitted name:

Putative uncharacterized protein

Gene

Syne1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Actin-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Syne1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1927152. Syne1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ6ZWR5.
PeptideAtlasiQ6ZWR5.
PRIDEiQ6ZWR5.

Expressioni

Gene expression databases

BgeeiQ6ZWR5.
GenevisibleiQ6ZWR5. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000039440.

Structurei

3D structure databases

ProteinModelPortaliQ6ZWR5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 134108Actin-bindingInterPro annotationAdd
BLAST
Domaini178 – 283106Actin-bindingInterPro annotationAdd
BLAST

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0516. Eukaryota.
COG5069. LUCA.

Family and domain databases

Gene3Di1.10.418.10. 2 hits.
InterProiIPR001589. Actinin_actin-bd_CS.
IPR001715. CH-domain.
IPR030265. SYNE1.
[Graphical view]
PANTHERiPTHR11915:SF267. PTHR11915:SF267. 1 hit.
PfamiPF00307. CH. 2 hits.
[Graphical view]
SMARTiSM00033. CH. 2 hits.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 2 hits.
PROSITEiPS00019. ACTININ_1. 1 hit.
PS00020. ACTININ_2. 1 hit.
PS50021. CH. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q6ZWR5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATSRASSRS HRDITNVMQR LQDEQEIVQK RTFTKWINSH LAKRKPPMVV
60 70 80 90 100
DDLFEDMKDG IKLLALLEVL SGQKLPCEQG HRVKRIHAVA NIGTALKFLE
110 120 130 140 150
GRKIKLVNIN ATDIADGRPS IVLGLMWTII LYFQIEELTS NLPQLQSLSS
160 170 180 190 200
SASSVDSMVS TETASPPSKR KVAAKIQGNA KKTLLKWVQH TAGKQMGIEV
210 220 230 240 250
KDFGKSWRTG LAFHSVIHAI QPELVDLEKV KTRSNRENLE DAFTIAETQL
260 270 280 290 300
GIPRLLDPED VDVDKPDEKS IMTYVAQFLT QYPDIHGAGC DGQEDDRDDR
310 320 330 340 350
LILKETKVWI EQFERDFTRA QMTESSLQDK YQAFKHFRVQ YEMKRKQVEH
360 370 380 390 400
IIQPLQRDGK LTLDQALVKQ CWERVSSRLF DWHIQLDKSL PAPLGTIGAW
410 420 430 440 450
LYRAEVALRE EITIQQVHEE TANTIQRKLE QHKDLLQNTD AHKRAFHEIY
460 470 480 490 500
QTRSVNGIPM PPDQLEDMAE RFHFVSSTSE LHLMKMEFLE LKYRLLSLLV
510 520 530 540 550
LAESKLKSWI IKYGRRESVE LLLQSYISFI ENSKFFEQYE VTYQILKQTA
560 570 580 590 600
DIYVKAEGSV EEAENVMKFM SEATAQWRNL SVEVRSVRSM LEEVISNWDR
610
YGDTVASLQA WLEDA
Length:615
Mass (Da):70,947
Last modified:July 19, 2004 - v1
Checksum:i10B1DA9E49B66AB9
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei615 – 6151Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK039486 mRNA. Translation: BAC30365.1.
RefSeqiNP_700448.2. NM_153399.2.
UniGeneiMm.331626.

Genome annotation databases

GeneIDi64009.
UCSCiuc007egm.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK039486 mRNA. Translation: BAC30365.1.
RefSeqiNP_700448.2. NM_153399.2.
UniGeneiMm.331626.

3D structure databases

ProteinModelPortaliQ6ZWR5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000039440.

Proteomic databases

PaxDbiQ6ZWR5.
PeptideAtlasiQ6ZWR5.
PRIDEiQ6ZWR5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi64009.
UCSCiuc007egm.1. mouse.

Organism-specific databases

CTDi23345.
MGIiMGI:1927152. Syne1.

Phylogenomic databases

eggNOGiKOG0516. Eukaryota.
COG5069. LUCA.

Miscellaneous databases

ChiTaRSiSyne1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ6ZWR5.
GenevisibleiQ6ZWR5. MM.

Family and domain databases

Gene3Di1.10.418.10. 2 hits.
InterProiIPR001589. Actinin_actin-bd_CS.
IPR001715. CH-domain.
IPR030265. SYNE1.
[Graphical view]
PANTHERiPTHR11915:SF267. PTHR11915:SF267. 1 hit.
PfamiPF00307. CH. 2 hits.
[Graphical view]
SMARTiSM00033. CH. 2 hits.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 2 hits.
PROSITEiPS00019. ACTININ_1. 1 hit.
PS00020. ACTININ_2. 1 hit.
PS50021. CH. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal cordImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal cordImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal cordImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal cordImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal cordImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal cordImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal cordImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal cordImported.

Entry informationi

Entry nameiQ6ZWR5_MOUSE
AccessioniPrimary (citable) accession number: Q6ZWR5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 19, 2004
Last sequence update: July 19, 2004
Last modified: July 6, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.