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Protein

Cilia- and flagella-associated protein 47

Gene

CFAP47

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Cilia- and flagella-associated protein 47Curated
Gene namesi
Name:CFAP47Imported
Synonyms:CHDC2Imported, CXorf22Imported, CXorf30Imported, CXorf59Imported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome X

Organism-specific databases

HGNCiHGNC:26708. CFAP47.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134928182.
PA145149062.
PA145149070.

Polymorphism and mutation databases

BioMutaiCXorf22.
DMDMi296439378.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 31023102Cilia- and flagella-associated protein 47PRO_0000079731Add
BLAST

Proteomic databases

EPDiQ6ZTR5.
PaxDbiQ6ZTR5.
PRIDEiQ6ZTR5.

PTM databases

iPTMnetiQ6ZTR5.
PhosphoSiteiQ6ZTR5.

Expressioni

Gene expression databases

BgeeiQ6ZTR5.
CleanExiHS_CXorf22.
ExpressionAtlasiQ6ZTR5. baseline and differential.
GenevisibleiQ6ZTR5. HS.

Organism-specific databases

HPAiHPA035744.
HPA044633.
HPA054859.

Interactioni

Protein-protein interaction databases

BioGridi130387. 2 interactions.
IntActiQ6ZTR5. 2 interactions.
STRINGi9606.ENSP00000297866.

Structurei

3D structure databases

ProteinModelPortaliQ6ZTR5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1661 – 1784124CHPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CH (calponin-homology) domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IFQ3. Eukaryota.
ENOG410IWWD. Eukaryota.
ENOG410IX35. Eukaryota.
ENOG410ZNN9. LUCA.
ENOG410ZSPY. LUCA.
ENOG410ZVMX. LUCA.
GeneTreeiENSGT00390000003295.
HOGENOMiHOG000049252.
HOVERGENiHBG080420.
InParanoidiQ6ZTR5.
OMAiDFDMEIQ.
OrthoDBiEOG7Z0JW2.
TreeFamiTF328359.

Family and domain databases

Gene3Di1.10.418.10. 1 hit.
InterProiIPR001715. CH-domain.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
PROSITEiPS50021. CH. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 3 (identifier: Q6ZTR5-3) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MNTQKGSLTI NVHRGSLAMS IQRGSLVPRD MDSSGRDMQL RVIPAEVKFL
60 70 80 90 100
DTMAGRVYRL PITVHNICRW NQKIRFKEPV KPQFKLMLTS LDKELASGLQ
110 120 130 140 150
MTAMVEYHPD KDEDTFDRLL ISIENKTTEI PLIGLIPSCQ LEIESVVNFG
160 170 180 190 200
TLVANSKVYS KEITITNHGK APGIFKAEYH GQLPILIFPT SGIVDAKSSM
210 220 230 240 250
VIKVDFCADQ PRIVDEEAIV ILQGQPEMLL SIKAHVVEQI IELLSMSSDR
260 270 280 290 300
RLECIHFGPV FFGSSKIKHA RVYNNSPEPI NWVAIIQDDA VGEELGTDIQ
310 320 330 340 350
QRTDIALNNL TYIRKIKNID TTIIISCLPN EGTLQPYQKT VITFCFTPKL
360 370 380 390 400
MAVGKKDIGP SYRQDYALFL RFESVGSKDG FLRDDDYKTI KSERFQKVEL
410 420 430 440 450
ALTGTGLPVL LQFDPGPVLN FKPCFMGERS EIQCIIKNQC ELLPVTYHFK
460 470 480 490 500
KTANFEIDPE KGKITGGGMV DVMCSFVPHQ LGVFKVKQMI EIIGLVAEED
510 520 530 540 550
LQSLSVKSFH HVYLAFNSIC KASTKKVVMK FDPGILPSIR NPTGKFVVKD
560 570 580 590 600
LAKRKNYAPV AMLQSAMTRT HNHRSCEEPV KDMLLAFPND RAATIRSKDH
610 620 630 640 650
HKHFRPIFTK VPRFNYVNHD FAYTTFEKQQ KKLHENYYAM YLKYLRSVRL
660 670 680 690 700
QKKQAERERM YSYDDTDIGL EPGSGLKSPS LSEAEIEEEL SSAANSIRAN
710 720 730 740 750
RLLTTRGIAS QEEESVRRKV LKGLKSEPST PQEKHDCSLM LTPKQIHQVI
760 770 780 790 800
VGPSVLNFGN ICVNSPNTHL LHVINMLPMH VLLQLDTDLE ELQKTNQFSY
810 820 830 840 850
VILPTSSTYI SMVFDSPTIG KFWKSFTFTV NNVPSGHILV VAVVQPVTLE
860 870 880 890 900
LSSNELVLRP RGFFMKTCFR GTVRLYNRQN CCAQFQWQPV NTGRGIAFSI
910 920 930 940 950
CPAKGTVEAY SSLECEVTWQ QGFSSPEEGE FILHVFQGNA LKLKCVAHLG
960 970 980 990 1000
RTKVLLLQPR ILFSNCPQGL TTWRKAILQN VGQNHAYFKV CSQSLLPIIN
1010 1020 1030 1040 1050
IIPSQGIVPF GGITVLNISC KPTVAEKFDT RAKVSIRHAN VIDLRIGGSA
1060 1070 1080 1090 1100
EIADVEINPD VFNFSGAYIG GTQIIPFVIK NKGITRARVE FNLKDFPDFS
1110 1120 1130 1140 1150
MDLKDKSEEF KDPAVPYIYS LELEENTSLE CSITFSPKEV TVVEFIIQVQ
1160 1170 1180 1190 1200
INFFESSKLY TKYLSSSPSN PKTVPLIRPC YVQATDRPGT YTADIPMLLN
1210 1220 1230 1240 1250
YIPVCYKILH LTGEVKSPEL LFDPPFIFFT PVPLDITTVM DINILPQNYF
1260 1270 1280 1290 1300
RNSTLCVQIP TVRLLDGEEI HPLSVKFPKG RVIPGSHSGI NNKLTCHLSF
1310 1320 1330 1340 1350
KSSKPVSFFT NLLFCDDRKN WFSLPVTATA ENCILTIYPY MAIHLDKQNI
1360 1370 1380 1390 1400
ILKNDKDEYL KKTRDGVLPP YQDAKPPSPA SIKKTYTTSK FNDAEPAKGN
1410 1420 1430 1440 1450
LFIGVEVLPE NLHLDESETS EEDHGSLEKE KYEQFLSLEE GTKAHYFFEK
1460 1470 1480 1490 1500
VVNAAQTWFS LFGWPEGPHS FSIPETIRRD VYKMQFYSST SPPQKFSRQN
1510 1520 1530 1540 1550
DFSKYNKTIY DVLLHLSGKM PPGINSSQSL PVDNHEKRVI QLHLQHSSLL
1560 1570 1580 1590 1600
DFLNAQGGCI SHVLPEFLLE PEDYKRWIEI MSSTNTMPVS SCTPKKKCSI
1610 1620 1630 1640 1650
VIEMSKFEAW SKRAWTDVFL QIYKVLVLSR VVPYCSNNMP PICVQNTPKV
1660 1670 1680 1690 1700
NPCFASSNIY SDSERILLSW MNINYENTRH VIWKNCHKDV IPSERWIVNF
1710 1720 1730 1740 1750
DKDLSDGLVF ATQLGAYCPF LIESHFINMY TRPKSPEEYL HNCLIIVNTL
1760 1770 1780 1790 1800
YEIDFDVEIQ ATDICDPNPI LMLMLCVYMY ERLPTYLPKK VVSFECTLHD
1810 1820 1830 1840 1850
TVLNKILLKN SSSRNLVYNA RIVGRDAADF SLSQKGNVVT ISPRNEINVT
1860 1870 1880 1890 1900
LKFTSRFIRP AEASLLLISK PKNAVRGITM TFALKGKVLD FKAIDIIKCE
1910 1920 1930 1940 1950
SPCYQFQEVT VNVKNPFHTA GDFSVILVES STFVSSPTKL TESRQYPKHD
1960 1970 1980 1990 2000
DDMSSSGSDT DQGCSDSPNV LHTSIKSTFI REFFCSMHTV HLGVKGTSSL
2010 2020 2030 2040 2050
ELRFLPFNMH VRYCVIILSN KKIGQLIYVA EGKGMTPLPS SCLPMNTSSS
2060 2070 2080 2090 2100
PVYYSTTREE GPNKKYPVLY LKCKPYQILY VDLKLPMTNE AKEKALAFAA
2110 2120 2130 2140 2150
QQQMSSIEYE RRLITGTLES SSIRVAIALL GLTKIETLML FRISKLRKPK
2160 2170 2180 2190 2200
TVSYTTEVSL PKYFYIPEKI SIPWIPEPQV IKLSKAKASD GSVPLPLQFL
2210 2220 2230 2240 2250
PLQSGRYPCK ILLKSRYDVR AYYVEGIVNE EQPEAKFEFE TPAFEALTQN
2260 2270 2280 2290 2300
IPIKNQTNDK WTFQVTIEGE WFYGPVDLHV GPDEIVEYPL TFKPIFECVI
2310 2320 2330 2340 2350
TGKLILQNEV DGREHIFDIK GVGKKPSALE HITVECQVGN VTQKHITLPH
2360 2370 2380 2390 2400
FTNTALTFKV TADLPIVWGN PQITVYPYKE ILYLIHVRPW KRGILKGTIT
2410 2420 2430 2440 2450
FSTTRRCTTR RKHDDYEEDT DQDQALSCLD SITEQSSILD DADTYGNFNN
2460 2470 2480 2490 2500
LRFWYNLEIH STPGPPIEIM EMTCIALDST CIEIPLSNPK DRGLHLEVQL
2510 2520 2530 2540 2550
TSAALNGDNE IILSPLQCTK YIVWYSPATT GYSDESIIFQ PEMAEEFWYL
2560 2570 2580 2590 2600
LKLTIELPKP TTMPEIQCDL GKHVTQIIPL VNCTHETLKL QVTNSNPENF
2610 2620 2630 2640 2650
VLDINRKSQL IISPHSTTEL PVLFYPSALG RADHQACINF YCTQFTEWKF
2660 2670 2680 2690 2700
YLSGVGLFPQ PLDTERITTR IGLQSTIVIP FKNPTMEDVL IDIILTSVEH
2710 2720 2730 2740 2750
PRNLVMDHCW DSFIYESSAF RFSSPSEIQG IALPPKGNID ISLLFIPQIM
2760 2770 2780 2790 2800
KLHKTMVIIE MTKANGKYWP IDNFDELDIK FKSIVGIDSE EIQAIHWIYP
2810 2820 2830 2840 2850
IVGLPQAPPP KSPPVVIQCQ SRKRAEEKVE IILNAGFFGF SLTPDLTEVL
2860 2870 2880 2890 2900
VIPKRNSHNF CEDPNEIPKI HEFEYEIQFE SEAMKSKLES CVALYMIEKS
2910 2920 2930 2940 2950
YDIMAKRITF IFNLVFTPKK PLRSHITLKI ECVTEGIWKF PIMLIATEPD
2960 2970 2980 2990 3000
TDAVIDIEGV GLFKESVFEL RLKSQTRNPE PFTAHFLPGS DLEFFVKPQA
3010 3020 3030 3040 3050
GELLPFNTNG TLITVGFKPK MYCRKYKATL VIQTEEMYWK YEINGLTPTT
3060 3070 3080 3090 3100
VPPKNAKAKI DATHKTHDNM PVRPHNFVRE NTKLIRTGVS STIKGAPLVK

NQ
Note: No experimental confirmation available.Curated
Length:3,102
Mass (Da):351,950
Last modified:October 14, 2015 - v4
Checksum:i4AD0011944DB711B
GO
Isoform 1 (identifier: Q6ZTR5-1) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     949-976: LGRTKVLLLQPRILFSNCPQGLTTWRKA → VIIFLEHGFCFEGYEFVGYTLVYIVTYI
     977-3102: Missing.

Note: No experimental confirmation available.1 Publication
Show »
Length:976
Mass (Da):110,411
Checksum:iDE14D0E93A093919
GO
Isoform 2 (identifier: Q6ZTR5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     752-754: GPS → VRY
     755-3102: Missing.

Note: No experimental confirmation available.1 Publication
Show »
Length:754
Mass (Da):85,483
Checksum:i0888750DCD0293B9
GO
Isoform 4 (identifier: Q6ZTR5-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1761-1842: ATDICDPNPI...SQKGNVVTIS → VCLRVFPKEM...HFFLLLPLDI
     1843-3102: Missing.

Note: No experimental confirmation available.2 Publications
Show »
Length:1,842
Mass (Da):209,126
Checksum:i2722AC433C49DF94
GO

Sequence cautioni

The sequence AAI01699.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence AAI01701.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence BAC04251.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti522 – 5221A → T in BAC86517 (PubMed:14702039).Curated
Sequence conflicti903 – 9031A → S in BAC86517 (PubMed:14702039).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti236 – 2361V → M.1 Publication
Corresponds to variant rs2336029 [ dbSNP | Ensembl ].
VAR_056856
Natural varianti345 – 3451C → R.
Corresponds to variant rs6632427 [ dbSNP | Ensembl ].
VAR_060280
Natural varianti561 – 5611A → T.
Corresponds to variant rs11795910 [ dbSNP | Ensembl ].
VAR_060281
Natural varianti634 – 6341H → Y.1 Publication
Corresponds to variant rs17852470 [ dbSNP | Ensembl ].
VAR_060282
Isoform 1 (identifier: Q6ZTR5-1)
Natural varianti964 – 9641F → L.1 Publication
Corresponds to variant rs6629027 [ dbSNP | Ensembl ].

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei752 – 7543GPS → VRY in isoform 2. 1 PublicationVSP_014372
Alternative sequencei755 – 31022348Missing in isoform 2. 1 PublicationVSP_014373Add
BLAST
Alternative sequencei949 – 97628LGRTK…TWRKA → VIIFLEHGFCFEGYEFVGYT LVYIVTYI in isoform 1. VSP_057885Add
BLAST
Alternative sequencei977 – 31022126Missing in isoform 1. 1 PublicationVSP_057886Add
BLAST
Alternative sequencei1761 – 184282ATDIC…VVTIS → VCLRVFPKEMDAGVSGLRKE DMPSVWVVTIRLAVAVARTK RQKKGDIQFACFFVCLFFFI FVVISFSLWSRMHFFLLLPL DI in isoform 4. 2 PublicationsVSP_057887Add
BLAST
Alternative sequencei1843 – 31021260Missing in isoform 4. 2 PublicationsVSP_057888Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK093920 mRNA. Translation: BAC04251.1. Different initiation.
AK126295 mRNA. Translation: BAC86517.1.
AC233304 Genomic DNA. No translation available.
AL590065 Genomic DNA. No translation available.
AL603753 Genomic DNA. No translation available.
AL606467 Genomic DNA. No translation available.
AL606516 Genomic DNA. No translation available.
KF459051 Genomic DNA. No translation available.
BC027936 mRNA. Translation: AAH27936.1.
BC101698 mRNA. Translation: AAI01699.1. Different initiation.
BC101700 mRNA. Translation: AAI01701.1. Different initiation.
CCDSiCCDS14237.2. [Q6ZTR5-1]
RefSeqiNP_001291477.1. NM_001304548.1.
NP_689845.2. NM_152632.3. [Q6ZTR5-1]
UniGeneiHs.376425.
Hs.575728.
Hs.632791.
Hs.739057.
Hs.742234.
Hs.742452.

Genome annotation databases

EnsembliENST00000297866; ENSP00000297866; ENSG00000165164. [Q6ZTR5-1]
ENST00000493930; ENSP00000433564; ENSG00000165164. [Q6ZTR5-2]
GeneIDi286464.
KEGGihsa:286464.
UCSCiuc004ddj.4. human. [Q6ZTR5-3]
uc011mkc.4. human.
uc064ymy.1. human.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK093920 mRNA. Translation: BAC04251.1. Different initiation.
AK126295 mRNA. Translation: BAC86517.1.
AC233304 Genomic DNA. No translation available.
AL590065 Genomic DNA. No translation available.
AL603753 Genomic DNA. No translation available.
AL606467 Genomic DNA. No translation available.
AL606516 Genomic DNA. No translation available.
KF459051 Genomic DNA. No translation available.
BC027936 mRNA. Translation: AAH27936.1.
BC101698 mRNA. Translation: AAI01699.1. Different initiation.
BC101700 mRNA. Translation: AAI01701.1. Different initiation.
CCDSiCCDS14237.2. [Q6ZTR5-1]
RefSeqiNP_001291477.1. NM_001304548.1.
NP_689845.2. NM_152632.3. [Q6ZTR5-1]
UniGeneiHs.376425.
Hs.575728.
Hs.632791.
Hs.739057.
Hs.742234.
Hs.742452.

3D structure databases

ProteinModelPortaliQ6ZTR5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi130387. 2 interactions.
IntActiQ6ZTR5. 2 interactions.
STRINGi9606.ENSP00000297866.

PTM databases

iPTMnetiQ6ZTR5.
PhosphoSiteiQ6ZTR5.

Polymorphism and mutation databases

BioMutaiCXorf22.
DMDMi296439378.

Proteomic databases

EPDiQ6ZTR5.
PaxDbiQ6ZTR5.
PRIDEiQ6ZTR5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000297866; ENSP00000297866; ENSG00000165164. [Q6ZTR5-1]
ENST00000493930; ENSP00000433564; ENSG00000165164. [Q6ZTR5-2]
GeneIDi286464.
KEGGihsa:286464.
UCSCiuc004ddj.4. human. [Q6ZTR5-3]
uc011mkc.4. human.
uc064ymy.1. human.

Organism-specific databases

CTDi286464.
GeneCardsiCFAP47.
HGNCiHGNC:26708. CFAP47.
HPAiHPA035744.
HPA044633.
HPA054859.
neXtProtiNX_Q6ZTR5.
PharmGKBiPA134928182.
PA145149062.
PA145149070.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IFQ3. Eukaryota.
ENOG410IWWD. Eukaryota.
ENOG410IX35. Eukaryota.
ENOG410ZNN9. LUCA.
ENOG410ZSPY. LUCA.
ENOG410ZVMX. LUCA.
GeneTreeiENSGT00390000003295.
HOGENOMiHOG000049252.
HOVERGENiHBG080420.
InParanoidiQ6ZTR5.
OMAiDFDMEIQ.
OrthoDBiEOG7Z0JW2.
TreeFamiTF328359.

Miscellaneous databases

GenomeRNAii286464.
PROiQ6ZTR5.

Gene expression databases

BgeeiQ6ZTR5.
CleanExiHS_CXorf22.
ExpressionAtlasiQ6ZTR5. baseline and differential.
GenevisibleiQ6ZTR5. HS.

Family and domain databases

Gene3Di1.10.418.10. 1 hit.
InterProiIPR001715. CH-domain.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
PROSITEiPS50021. CH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1279-3102 (ISOFORM 4), VARIANT MET-236.
    Tissue: Trachea.
  2. "The DNA sequence of the human X chromosome."
    Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C.
    , Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.
    Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1328-3102 (ISOFORM 4), VARIANT TYR-634.
    Tissue: Cerebellum and Lung.

Entry informationi

Entry nameiCFA47_HUMAN
AccessioniPrimary (citable) accession number: Q6ZTR5
Secondary accession number(s): A6PW82
, B1ARL5, Q5JRM8, Q8N6X8, Q8N9S7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: October 14, 2015
Last modified: June 8, 2016
This is version 98 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome X
    Human chromosome X: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.